Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008278

Physical Location & Seq

Genomic Coordinates Forward (+)

21452054 .. 21453493

Gene Structure 1440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTTTCACGTCAATTCTCCGCCGATCGGCCTCCTCCCTGGCCCCACTCGCCAGCCGCCTTGCTCGTGGCCAGCGGTCTTACCACGGCGCTGTTGCCACCACCGTCAACCACTTCAATTTCTCCCGAAAGCACACTCAGCCGACCCCTTTCGTTCCCACCCCTCGATACTACTCGAGCCACAGTTCGGACCAGTCTCTGATCAGGATCATCGAGTCGGAGATCAAGTGCGCTGAGGAGACCGAGGATCTCGACAAGGTTGAGGAGATTCCATCATCCTTCCCTTTTAAAATTGAAGATACTCCCGGAATCCAGACGGTGACGCTGAAAAGAACGTATCAAGGTGAAGACATACAGGTTGAAGTTCACATGCCTGATCTAGTCACAGGTGAAGACGACAACGATGATAACCAAAATGATGACAATGATGAACACGCCAACCAATCCAGCATCCCGTTGGTCGTAACTGTCTCCAAGGGTAACGGACCAGTTCTCGAGTTTAGCATCACTGCTTACCCTGATGAGTTTCAAATTGACAGCTTGGCAGTGAAAAATCCCGAAGATTCCGAGGATCAAATTGCCTATGAGGGGCCTGATTTCCATGATTTGGACGAGAACCTTCAGAAGGCATTCCACAAGTATTTGGAGGTGAGAGGAATCAAGCCCAGCACAACCAATTTCTTGCATGAGTACATGCTCAACAAGGACAGCAAAGAATATGCAAACTGGTTGCAGCAACTTAAGCGCTTCGTCGAAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

254

Amino Acids

28.73

Weight (kDa)

4.77

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39790 AT2G39795 AT2G46190 AT3G55605 AT5G05990
fragaria_vesca	FvH4_7g23410
malus_domestica	MD00G1150700.v1.1 MD01G1140100.v1.1 MD07G1204400.v1.1 MD12G1094400.v1.1
prunus_persica	Prupe.2G240700_v2.0.a1
pyrus_communis	pycom01g16060 pycom07g19100
rosa_chinensis	RchiOBHm_Chr1g0368531
rosa_laevigata	RLG00000027205
rosa_multiflora	Rmu_sc0011394.1_g000008 Rmu_sc0035758.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288460
rosa_rugosa	Rorug01G0342700
rosa_samantha	Rh1AG350000 Rh1BG313200 Rh1CG327900 Rh1DG344600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	607
AciI	CCGC	3 cut(s)	22, 58, 76
AclWI	GGATC	3 cut(s)	215, 255, 579
AcoI	YGGCCR	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	605
AfaI	GTAC	1 cut(s)	692
AfeI	AGCGCT	1 cut(s)	746
AfiI	CCNNNNNNNGG	5 cut(s)	28, 187, 588, 607, 625
AflII	CTTAAG	1 cut(s)	740
AgsI	TTSAA	4 cut(s)	118, 296, 362, 530
AjiI	CACGTC	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	1 cut(s)	540
AluI	AGCT	1 cut(s)	540
Alw26I	GTCTC	3 cut(s)	201, 233, 475
AlwI	GGATC	3 cut(s)	215, 255, 579
AlwNI	CAGNNNCTG	1 cut(s)	199
Ama87I	CYCGRG	2 cut(s)	175, 494
Aor51HI	AGCGCT	1 cut(s)	746
AoxI	GGCC	4 cut(s)	30, 42, 70, 590
ApeKI	GCWGC	1 cut(s)	733
Asp700I	GAANNNNTTC	1 cut(s)	629
AspLEI	GCGC	3 cut(s)	92, 233, 747
AspS9I	GGNCC	4 cut(s)	43, 190, 485, 590
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	4 cut(s)	331, 356, 401, 661
AvaI	CYCGRG	2 cut(s)	175, 494
AvaII	GGWCC	2 cut(s)	190, 485
BalI	TGGCCA	1 cut(s)	72
BauI	CACGAG	1 cut(s)	66
BbsI	GAAGAC	2 cut(s)	354, 399
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	745
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	41
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	3 cut(s)	201, 233, 475
BfaI	CTAG	1 cut(s)	380
BfoI	RGCGCY	2 cut(s)	93, 748
BfrI	CTTAAG	1 cut(s)	740
BisI	GCNGC	2 cut(s)	58, 734
BlsI	GCNGC	2 cut(s)	59, 735
Bme1390I	CCNGG	2 cut(s)	41, 306
Bme18I	GGWCC	2 cut(s)	190, 485
BmeT110I	CYCGRG	2 cut(s)	175, 494
BmgBI	CACGTC	1 cut(s)	12
BmgT120I	GGNCC	4 cut(s)	43, 190, 485, 590
BmiI	GGNNCC	2 cut(s)	45, 591
BmrFI	CCNGG	2 cut(s)	41, 306
BmsI	GCATC	2 cut(s)	459, 513
BpiI	GAAGAC	2 cut(s)	354, 399
Bpu10I	CCTNAGC	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	306
BsaBI	GATNNNNATC	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	5 cut(s)	39, 85, 243, 474, 567
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 187, 588, 607, 625
Bse1I	ACTGG	3 cut(s)	193, 488, 731
Bse8I	GATNNNNATC	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	5 cut(s)	39, 85, 243, 474, 567
BseGI	GGATG	2 cut(s)	275, 450
BseJI	GATNNNNATC	1 cut(s)	206
BseLI	CCNNNNNNNGG	5 cut(s)	28, 187, 588, 607, 625
BseMII	CTCAG	2 cut(s)	152, 225
BseNI	ACTGG	3 cut(s)	193, 488, 731
BseRI	GAGGAG	3 cut(s)	25, 251, 278
BseXI	GCAGC	1 cut(s)	745
BseYI	CCCAGC	1 cut(s)	665
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	4 cut(s)	32, 44, 72, 592
BsiEI	CGRYCG	1 cut(s)	29
BsiHKCI	CYCGRG	2 cut(s)	175, 494
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	5 cut(s)	28, 187, 588, 607, 625
BsmAI	GTCTC	3 cut(s)	201, 233, 475
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	4 cut(s)	32, 44, 72, 592
Bso31I	GGTCTC	1 cut(s)	233
BsoBI	CYCGRG	2 cut(s)	175, 494
Bsp143I	GATC	7 cut(s)	26, 201, 207, 222, 247, 376, 571
BspACI	CCGC	3 cut(s)	22, 58, 76
BspANI	GGCC	4 cut(s)	32, 44, 72, 592
BspCNI	CTCAG	2 cut(s)	151, 226
BspLI	GGNNCC	2 cut(s)	45, 591
BspPI	GGATC	3 cut(s)	215, 255, 579
BspTI	CTTAAG	1 cut(s)	740
BspTNI	GGTCTC	1 cut(s)	233
BsrI	ACTGG	3 cut(s)	193, 488, 731
BssECI	CCNNGG	5 cut(s)	39, 85, 243, 474, 567
BssMI	GATC	7 cut(s)	26, 201, 207, 222, 247, 376, 571
BssSI	CACGAG	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	474
Bst2BI	CACGAG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	4 cut(s)	106, 185, 319, 469
BstAFI	CTTAAG	1 cut(s)	740
BstC8I	GCNNGC	2 cut(s)	55, 74
BstDEI	CTNAG	2 cut(s)	138, 234
BstDSI	CCRYGG	1 cut(s)	85
BstENI	CCTNNNNNAGG	1 cut(s)	623
BstF5I	GGATG	2 cut(s)	275, 450
BstH2I	RGCGCY	2 cut(s)	93, 748
BstHHI	GCGC	3 cut(s)	92, 233, 747
BstKTI	GATC	7 cut(s)	29, 204, 210, 225, 250, 379, 574
BstMAI	GTCTC	3 cut(s)	201, 233, 475
BstMBI	GATC	7 cut(s)	26, 201, 207, 222, 247, 376, 571
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 139, 742
BstNI	CCWGG	1 cut(s)	41
BstNSI	RCATGY	2 cut(s)	373, 697
BstSCI	CCNGG	2 cut(s)	39, 304
BstV1I	GCAGC	1 cut(s)	745
BstV2I	GAAGAC	2 cut(s)	354, 399
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	4 cut(s)	32, 44, 72, 592
BtgI	CCRYGG	1 cut(s)	85
BtrI	CACGTC	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	275, 450
BtsI	GCAGTG	2 cut(s)	507, 552
BtsIMutI	CAGTG	2 cut(s)	507, 552
Cac8I	GCNNGC	2 cut(s)	55, 74
CaiI	CAGNNNCTG	1 cut(s)	199
CfoI	GCGC	3 cut(s)	92, 233, 747
Cfr13I	GGNCC	4 cut(s)	43, 190, 485, 590
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	691
CviAII	CATG	4 cut(s)	370, 602, 686, 694
CviQI	GTAC	1 cut(s)	691
DdeI	CTNAG	2 cut(s)	138, 234
DpnI	GATC	7 cut(s)	28, 203, 209, 224, 249, 378, 573
DpnII	GATC	7 cut(s)	26, 201, 207, 222, 247, 376, 571
DraI	TTTAAA	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	70
EciI	GGCGGA	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	474
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	190, 485
Eco47III	AGCGCT	1 cut(s)	746
Eco57I	CTGAAG	1 cut(s)	605
Eco88I	CYCGRG	2 cut(s)	175, 494
EcoNI	CCTNNNNNAGG	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	4 cut(s)	373, 605, 689, 697
FaiI	YATR	7 cut(s)	353, 371, 585, 603, 687, 695, 720
FatI	CATG	4 cut(s)	369, 601, 685, 693
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	58, 734
FokI	GGATG	2 cut(s)	262, 437
Fsp4HI	GCNGC	2 cut(s)	58, 734
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	3 cut(s)	91, 232, 746
GluI	GCNGC	2 cut(s)	58, 734
GsaI	CCCAGC	1 cut(s)	669
HaeII	RGCGCY	2 cut(s)	93, 748
HaeIII	GGCC	4 cut(s)	32, 44, 72, 592
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	1 cut(s)	331
HhaI	GCGC	3 cut(s)	92, 233, 747
Hin1II	CATG	4 cut(s)	373, 605, 689, 697
Hin6I	GCGC	3 cut(s)	90, 231, 745
HinP1I	GCGC	3 cut(s)	90, 231, 745
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	5 cut(s)	215, 268, 309, 563, 657
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	4 cut(s)	331, 356, 401, 661
Hpy166II	GTNNAC	2 cut(s)	109, 367
Hpy188I	TCNGA	5 cut(s)	190, 201, 220, 568, 624
Hpy188III	TCNNGA	6 cut(s)	126, 205, 251, 313, 494, 557
Hpy8I	GTNNAC	2 cut(s)	109, 367
Hpy99I	CGWCG	1 cut(s)	755
HpyAV	CCTTC	3 cut(s)	289, 619, 629
HpyCH4III	ACNGT	4 cut(s)	106, 185, 319, 469
HpyCH4IV	ACGT	2 cut(s)	11, 335
HpyCH4V	TGCA	3 cut(s)	685, 722, 733
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 139, 742
HpyF3I	CTNAG	2 cut(s)	138, 234
HpySE526I	ACGT	2 cut(s)	11, 335
Hsp92II	CATG	4 cut(s)	373, 605, 689, 697
HspAI	GCGC	3 cut(s)	90, 231, 745
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	7 cut(s)	26, 201, 207, 222, 247, 376, 571
Lsp1109I	GCAGC	1 cut(s)	745
LweI	GCATC	2 cut(s)	459, 513
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	2 cut(s)	11, 335
MaeIII	GTNAC	4 cut(s)	319, 382, 463, 479
MalI	GATC	7 cut(s)	28, 203, 209, 224, 249, 378, 573
MboI	GATC	7 cut(s)	26, 201, 207, 222, 247, 376, 571
MboII	GAAGA	4 cut(s)	308, 359, 404, 572
MflI	RGATCY	1 cut(s)	247
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	6 cut(s)	15, 118, 291, 531, 576, 676
MluNI	TGGCCA	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	198
Mox20I	TGGCCA	1 cut(s)	72
MroXI	GAANNNNTTC	1 cut(s)	629
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	2 cut(s)	288, 741
Msp20I	TGGCCA	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	76
MspCI	CTTAAG	1 cut(s)	740
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	2 cut(s)	41, 306
Mva1269I	GAATGC	1 cut(s)	629
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	50, 139, 742
NciI	CCSGG	1 cut(s)	306
NdeII	GATC	7 cut(s)	26, 201, 207, 222, 247, 376, 571
NlaIII	CATG	4 cut(s)	373, 605, 689, 697
NlaIV	GGNNCC	2 cut(s)	45, 591
NmuCI	GTSAC	2 cut(s)	319, 382
NspI	RCATGY	2 cut(s)	373, 697
PaeR7I	CTCGAG	2 cut(s)	175, 494
PctI	GAATGC	1 cut(s)	629
PdmI	GAANNNNTTC	1 cut(s)	629
PfeI	GAWTC	4 cut(s)	268, 309, 563, 657
PflMI	CCANNNNNTGG	1 cut(s)	607
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	59, 735
Ple19I	CGATCG	1 cut(s)	29
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	665
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	45, 591
PspPI	GGNCC	4 cut(s)	43, 190, 485, 590
PspXI	VCTCGAGB	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	247
PvuI	CGATCG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	692
RsaNI	GTAC	1 cut(s)	691
SaqAI	TTAA	2 cut(s)	288, 741
SatI	GCNGC	2 cut(s)	58, 734
Sau3AI	GATC	7 cut(s)	26, 201, 207, 222, 247, 376, 571
Sau96I	GGNCC	4 cut(s)	43, 190, 485, 590
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	2 cut(s)	41, 306
SetI	ASST	9 cut(s)	14, 261, 338, 346, 360, 391, 542, 621, 651
SfaNI	GCATC	2 cut(s)	459, 513
Sfr274I	CTCGAG	2 cut(s)	175, 494
SinI	GGWCC	2 cut(s)	190, 485
SlaI	CTCGAG	2 cut(s)	175, 494
SmlI	CTYRAG	3 cut(s)	175, 494, 740
SmoI	CTYRAG	3 cut(s)	175, 494, 740
Sse9I	AATT	6 cut(s)	15, 118, 291, 531, 576, 676
SsiI	CCGC	3 cut(s)	22, 58, 76
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	2 cut(s)	39, 304
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	4 cut(s)	106, 185, 319, 469
TaiI	ACGT	2 cut(s)	14, 338
TaqI	TCGA	6 cut(s)	166, 176, 213, 252, 495, 753
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	6 cut(s)	15, 118, 291, 531, 576, 676
TatI	WGTACW	1 cut(s)	690
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	4 cut(s)	268, 309, 563, 657
Tru1I	TTAA	2 cut(s)	288, 741
Tru9I	TTAA	2 cut(s)	288, 741
TscAI	CASTG	2 cut(s)	514, 552
TseFI	GTSAC	2 cut(s)	319, 382
TseI	GCWGC	1 cut(s)	733
Tsp45I	GTSAC	2 cut(s)	319, 382
TspDTI	ATGAA	1 cut(s)	444
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	2 cut(s)	514, 552
Van91I	CCANNNNNTGG	1 cut(s)	607
Vha464I	CTTAAG	1 cut(s)	740
VpaK11BI	GGWCC	2 cut(s)	190, 485
XagI	CCTNNNNNAGG	1 cut(s)	623
XceI	RCATGY	2 cut(s)	373, 697
XcmI	CCANNNNNNNNNTGG	1 cut(s)	454
XhoI	CTCGAG	2 cut(s)	175, 494
XmnI	GAANNNNTTC	1 cut(s)	629
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.