Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008278

Physical Location & Seq

Genomic Coordinates Forward (+)

15763357 .. 15764894

Gene Structure 1538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16060.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTTTCACTTCAATTCTCCGCCGTTCGGCCTCCTCCCTGGCCCCACTCGCCAGCCGCCTCGCTCGCGGCCAACGATCTTACCACGGCGCTGTTGCCATCGCCGCGAACCACTTCAGTTTCTCCCGCAAGCCCACTCAACCGACCCCTTTCGTTCCCACCCCTCGATACTACTCGAGCCACAGTTCGGACCAGTCTCTGATCAGGGTCATCGAGTCGGAGATCAAGTGCGCTGAAGAGACGGATGATCTCGATAAGGTTGAGGAGATTCCATCAGCCTTCCCTTTTAAAATTGAAGATGCTCCCGGAATCCAAACAGTGACACTGAAAAGAACATATCAAGGGGAAGACATACAGGTTGAAGTTCACATGCCTGATCTAGTTACTGGTGAGGATGACGATGATGATAACCAAGATGATGACAACGATGAACACGCCAACAAATCCAGCATCCCATTGGTCGTAACTGTCTCCAAGACTAATGGACCAGTTCTCGAGTTTAGCGTCACTGCTTACCCTGATGAGTTTCAAATTGATGGCTTGGCTGTGAAAAATCCAGGGGATTCTGAGGATCAAATCGCCTACGAGGGGCCTGACTTCCACGATTTGGATGAGAACCTTCAGAAGGCATTCCACAAGTACTTGGAGGTGAGAGGGATCAAGCCCAGCACAACCAATTTCTTGCATGAGTACATGCTCAACAAGGACAGCAAAGAATATGCAAATTGGTTGCAGCAACTTAAGAGCTTCGTCGAAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

254

Amino Acids

28.4

Weight (kDa)

4.66

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39790 AT2G39795 AT2G46190 AT3G55605 AT5G05990
fragaria_vesca	FvH4_7g23410
malus_domestica	MD00G1150700.v1.1 MD01G1140100.v1.1 MD07G1204400.v1.1 MD12G1094400.v1.1
prunus_persica	Prupe.2G240700_v2.0.a1
pyrus_communis	pycom01g16060 pycom07g19100
rosa_chinensis	RchiOBHm_Chr1g0368531
rosa_laevigata	RLG00000027205
rosa_multiflora	Rmu_sc0011394.1_g000008 Rmu_sc0035758.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288460
rosa_rugosa	Rorug01G0342700
rosa_samantha	Rh1AG350000 Rh1BG313200 Rh1CG327900 Rh1DG344600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	607
AccII	CGCG	2 cut(s)	69, 107
AciI	CCGC	5 cut(s)	22, 58, 69, 105, 127
AclWI	GGATC	2 cut(s)	579, 665
AcoI	YGGCCR	1 cut(s)	70
AcuI	CTGAAG	3 cut(s)	100, 255, 605
AfaI	GTAC	2 cut(s)	641, 692
AfiI	CCNNNNNNNGG	5 cut(s)	28, 187, 588, 607, 625
AflII	CTTAAG	1 cut(s)	740
AgsI	TTSAA	4 cut(s)	15, 296, 362, 530
AjnI	CCWGG	2 cut(s)	39, 556
AluBI	AGCT	1 cut(s)	747
AluI	AGCT	1 cut(s)	747
Alw26I	GTCTC	3 cut(s)	201, 233, 475
AlwI	GGATC	2 cut(s)	579, 665
AlwNI	CAGNNNCTG	1 cut(s)	199
Ama87I	CYCGRG	2 cut(s)	175, 494
AoxI	GGCC	4 cut(s)	30, 42, 70, 590
ApeKI	GCWGC	1 cut(s)	733
Asp700I	GAANNNNTTC	2 cut(s)	113, 629
AspLEI	GCGC	2 cut(s)	92, 233
AspS9I	GGNCC	4 cut(s)	43, 190, 485, 590
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	2 cut(s)	401, 661
AvaI	CYCGRG	2 cut(s)	175, 494
AvaII	GGWCC	2 cut(s)	190, 485
BbsI	GAAGAC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	745
BccI	CCATC	3 cut(s)	107, 280, 530
BceAI	ACGGC	2 cut(s)	9, 103
BciT130I	CCWGG	2 cut(s)	41, 558
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	3 cut(s)	201, 233, 475
BfaI	CTAG	1 cut(s)	380
BfoI	RGCGCY	1 cut(s)	93
BfrI	CTTAAG	1 cut(s)	740
BisI	GCNGC	4 cut(s)	58, 70, 105, 734
BlsI	GCNGC	4 cut(s)	59, 71, 106, 735
BmcAI	AGTACT	1 cut(s)	641
Bme1390I	CCNGG	3 cut(s)	41, 306, 558
Bme18I	GGWCC	2 cut(s)	190, 485
BmeT110I	CYCGRG	2 cut(s)	175, 494
BmgT120I	GGNCC	4 cut(s)	43, 190, 485, 590
BmiI	GGNNCC	2 cut(s)	45, 591
BmrFI	CCNGG	3 cut(s)	41, 306, 558
BmsI	GCATC	2 cut(s)	289, 459
BpiI	GAAGAC	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	306
BsaJI	CCNNGG	3 cut(s)	39, 85, 557
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 187, 588, 607, 625
Bse1I	ACTGG	3 cut(s)	193, 391, 488
BseBI	CCWGG	2 cut(s)	41, 558
BseDI	CCNNGG	3 cut(s)	39, 85, 557
BseGI	GGATG	4 cut(s)	250, 400, 450, 616
BseLI	CCNNNNNNNGG	5 cut(s)	28, 187, 588, 607, 625
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	3 cut(s)	193, 391, 488
BseRI	GAGGAG	2 cut(s)	25, 278
BseXI	GCAGC	1 cut(s)	745
BseYI	CCCAGC	1 cut(s)	665
Bsh1236I	CGCG	2 cut(s)	69, 107
BshFI	GGCC	4 cut(s)	32, 44, 72, 592
BsiHKCI	CYCGRG	2 cut(s)	175, 494
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	5 cut(s)	28, 187, 588, 607, 625
BsmAI	GTCTC	3 cut(s)	201, 233, 475
BsmBI	CGTCTC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	4 cut(s)	32, 44, 72, 592
BsoBI	CYCGRG	2 cut(s)	175, 494
Bsp143I	GATC	7 cut(s)	77, 201, 222, 247, 376, 571, 657
BspACI	CCGC	5 cut(s)	22, 58, 69, 105, 127
BspANI	GGCC	4 cut(s)	32, 44, 72, 592
BspCNI	CTCAG	1 cut(s)	559
BspFNI	CGCG	2 cut(s)	69, 107
BspLI	GGNNCC	2 cut(s)	45, 591
BspPI	GGATC	2 cut(s)	579, 665
BspTI	CTTAAG	1 cut(s)	740
BsrI	ACTGG	3 cut(s)	193, 391, 488
BssECI	CCNNGG	3 cut(s)	39, 85, 557
BssMI	GATC	7 cut(s)	77, 201, 222, 247, 376, 571, 657
Bst2UI	CCWGG	2 cut(s)	41, 558
Bst4CI	ACNGT	3 cut(s)	185, 319, 469
Bst6I	CTCTTC	1 cut(s)	231
BstAFI	CTTAAG	1 cut(s)	740
BstC8I	GCNNGC	3 cut(s)	55, 67, 131
BstDEI	CTNAG	1 cut(s)	567
BstDSI	CCRYGG	1 cut(s)	85
BstENI	CCTNNNNNAGG	1 cut(s)	623
BstF5I	GGATG	4 cut(s)	250, 400, 450, 616
BstFNI	CGCG	2 cut(s)	69, 107
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	92, 233
BstKTI	GATC	7 cut(s)	80, 204, 225, 250, 379, 574, 660
BstMAI	GTCTC	3 cut(s)	201, 233, 475
BstMBI	GATC	7 cut(s)	77, 201, 222, 247, 376, 571, 657
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 66, 104
BstNI	CCWGG	2 cut(s)	41, 558
BstNSI	RCATGY	2 cut(s)	373, 697
BstSCI	CCNGG	3 cut(s)	39, 304, 556
BstUI	CGCG	2 cut(s)	69, 107
BstV1I	GCAGC	1 cut(s)	745
BstV2I	GAAGAC	1 cut(s)	354
BsuRI	GGCC	4 cut(s)	32, 44, 72, 592
BtgI	CCRYGG	1 cut(s)	85
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	4 cut(s)	250, 400, 450, 616
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	3 cut(s)	323, 324, 507
Cac8I	GCNNGC	3 cut(s)	55, 67, 131
CaiI	CAGNNNCTG	1 cut(s)	199
CfoI	GCGC	2 cut(s)	92, 233
Cfr13I	GGNCC	4 cut(s)	43, 190, 485, 590
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	2 cut(s)	640, 691
CviAII	CATG	3 cut(s)	370, 686, 694
CviQI	GTAC	2 cut(s)	640, 691
DdeI	CTNAG	1 cut(s)	567
DpnI	GATC	7 cut(s)	79, 203, 224, 249, 378, 573, 659
DpnII	GATC	7 cut(s)	77, 201, 222, 247, 376, 571, 657
DraI	TTTAAA	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	11
Eco47I	GGWCC	2 cut(s)	190, 485
Eco57I	CTGAAG	3 cut(s)	100, 255, 605
Eco88I	CYCGRG	2 cut(s)	175, 494
EcoNI	CCTNNNNNAGG	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	590
EcoRII	CCWGG	2 cut(s)	39, 556
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	3 cut(s)	373, 689, 697
FaiI	YATR	6 cut(s)	337, 353, 371, 687, 695, 720
FatI	CATG	3 cut(s)	369, 685, 693
FauI	CCCGC	1 cut(s)	134
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	4 cut(s)	58, 70, 105, 734
FokI	GGATG	4 cut(s)	257, 407, 437, 623
Fsp4HI	GCNGC	4 cut(s)	58, 70, 105, 734
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	2 cut(s)	91, 232
GluI	GCNGC	4 cut(s)	58, 70, 105, 734
GsaI	CCCAGC	1 cut(s)	669
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	4 cut(s)	32, 44, 72, 592
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	2 cut(s)	92, 233
Hin1II	CATG	3 cut(s)	373, 689, 697
Hin6I	GCGC	2 cut(s)	90, 231
HinP1I	GCGC	2 cut(s)	90, 231
HinfI	GANTC	4 cut(s)	215, 268, 309, 563
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	2 cut(s)	401, 661
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	5 cut(s)	190, 201, 220, 568, 624
Hpy188III	TCNNGA	2 cut(s)	251, 494
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	1 cut(s)	755
HpyAV	CCTTC	3 cut(s)	289, 619, 629
HpyCH4III	ACNGT	3 cut(s)	185, 319, 469
HpyCH4V	TGCA	3 cut(s)	685, 722, 733
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 66, 104
HpyF3I	CTNAG	1 cut(s)	567
Hsp92II	CATG	3 cut(s)	373, 689, 697
HspAI	GCGC	2 cut(s)	90, 231
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	7 cut(s)	77, 201, 222, 247, 376, 571, 657
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	1 cut(s)	745
LweI	GCATC	2 cut(s)	289, 459
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	4 cut(s)	319, 382, 463, 505
MalI	GATC	7 cut(s)	79, 203, 224, 249, 378, 573, 659
MboI	GATC	7 cut(s)	77, 201, 222, 247, 376, 571, 657
MboII	GAAGA	3 cut(s)	248, 308, 359
MluCI	AATT	5 cut(s)	15, 291, 531, 676, 724
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	198
MroXI	GAANNNNTTC	2 cut(s)	113, 629
MseI	TTAA	2 cut(s)	288, 741
MspCI	CTTAAG	1 cut(s)	740
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	3 cut(s)	41, 306, 558
Mva1269I	GAATGC	1 cut(s)	629
MvaI	CCWGG	2 cut(s)	41, 558
MvnI	CGCG	2 cut(s)	69, 107
MwoI	GCNNNNNNNGC	3 cut(s)	50, 66, 104
NciI	CCSGG	1 cut(s)	306
NdeII	GATC	7 cut(s)	77, 201, 222, 247, 376, 571, 657
NlaIII	CATG	3 cut(s)	373, 689, 697
NlaIV	GGNNCC	2 cut(s)	45, 591
NmuCI	GTSAC	2 cut(s)	319, 505
NspI	RCATGY	2 cut(s)	373, 697
PaeR7I	CTCGAG	2 cut(s)	175, 494
PcsI	WCGNNNNNNNCGW	2 cut(s)	73, 501
PctI	GAATGC	1 cut(s)	629
PdmI	GAANNNNTTC	2 cut(s)	113, 629
PfeI	GAWTC	3 cut(s)	268, 309, 563
PflMI	CCANNNNNTGG	1 cut(s)	607
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	4 cut(s)	59, 71, 106, 735
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	39, 556
PspFI	CCCAGC	1 cut(s)	665
PspGI	CCWGG	2 cut(s)	39, 556
PspN4I	GGNNCC	2 cut(s)	45, 591
PspPI	GGNCC	4 cut(s)	43, 190, 485, 590
PspXI	VCTCGAGB	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	199
RsaI	GTAC	2 cut(s)	641, 692
RsaNI	GTAC	2 cut(s)	640, 691
SaqAI	TTAA	2 cut(s)	288, 741
SatI	GCNGC	4 cut(s)	58, 70, 105, 734
Sau3AI	GATC	7 cut(s)	77, 201, 222, 247, 376, 571, 657
Sau96I	GGNCC	4 cut(s)	43, 190, 485, 590
ScaI	AGTACT	1 cut(s)	641
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	3 cut(s)	41, 306, 558
SetI	ASST	5 cut(s)	261, 360, 621, 651, 749
SfaNI	GCATC	2 cut(s)	289, 459
Sfr274I	CTCGAG	2 cut(s)	175, 494
SinI	GGWCC	2 cut(s)	190, 485
SlaI	CTCGAG	2 cut(s)	175, 494
SmlI	CTYRAG	3 cut(s)	175, 494, 740
SmoI	CTYRAG	3 cut(s)	175, 494, 740
Sse9I	AATT	5 cut(s)	15, 291, 531, 676, 724
SsiI	CCGC	5 cut(s)	22, 58, 69, 105, 127
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	3 cut(s)	39, 304, 556
TaaI	ACNGT	3 cut(s)	185, 319, 469
TaqI	TCGA	6 cut(s)	166, 176, 213, 252, 495, 753
TasI	AATT	5 cut(s)	15, 291, 531, 676, 724
TatI	WGTACW	2 cut(s)	639, 690
TauI	GCSGC	3 cut(s)	60, 72, 107
TfiI	GAWTC	3 cut(s)	268, 309, 563
Tru1I	TTAA	2 cut(s)	288, 741
Tru9I	TTAA	2 cut(s)	288, 741
TscAI	CASTG	3 cut(s)	324, 330, 514
TseFI	GTSAC	2 cut(s)	319, 505
TseI	GCWGC	1 cut(s)	733
Tsp45I	GTSAC	2 cut(s)	319, 505
TspDTI	ATGAA	1 cut(s)	444
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	3 cut(s)	324, 330, 514
Van91I	CCANNNNNTGG	1 cut(s)	607
Vha464I	CTTAAG	1 cut(s)	740
VpaK11BI	GGWCC	2 cut(s)	190, 485
XagI	CCTNNNNNAGG	1 cut(s)	623
XceI	RCATGY	2 cut(s)	373, 697
XcmI	CCANNNNNNNNNTGG	1 cut(s)	454
XhoI	CTCGAG	2 cut(s)	175, 494
XmnI	GAANNNNTTC	2 cut(s)	113, 629
XspI	CTAG	1 cut(s)	380
ZrmI	AGTACT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.