AAA domain (Cdc48 subfamily)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G40130 AT2G40130 |
| fragaria_vesca | FvH4_7g24540 FvH4_7g24540 |
| malus_domestica | MD01G1153400.v1.1 MD07G1222400.v1.1 |
| prunus_persica | Prupe.2G250700_v2.0.a1 Prupe.2G250700_v2.0.a1 |
| pyrus_communis | pycom01g17100 pycom07g20100 pycom07g20110 |
| rosa_chinensis | RchiOBHm_Chr1g0370371 |
| rosa_laevigata | RLG00000027054 |
| rosa_multiflora | Rmu_co8224134.1_g000001 Rmu_co8315027.1_g000001 Rmu_sc0006707.1_g000030 Rmu_sc0029129.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00286640 |
| rosa_rugosa | Rorug01G0355800 Rorug01G0355900 |
| rosa_samantha | Rh1AG364200 Rh1BG327500 Rh1CG340500 Rh1DG357800 |
| rosa_wichuraiana | Rw1G032050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 110, 2060 |
| AccB1I | GGYRCC | 1 cut(s) | 1820 |
| AccII | CGCG | 2 cut(s) | 674, 1826 |
| AclI | AACGTT | 2 cut(s) | 75, 2361 |
| AcoI | YGGCCR | 1 cut(s) | 1806 |
| AcsI | RAATTY | 4 cut(s) | 637, 751, 857, 2467 |
| AcuI | CTGAAG | 3 cut(s) | 343, 2118, 2216 |
| AcyI | GRCGYC | 2 cut(s) | 107, 2057 |
| AfaI | GTAC | 3 cut(s) | 627, 735, 984 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 882, 1211, 1256, 1386, 2194 |
| AflII | CTTAAG | 2 cut(s) | 229, 1154 |
| AhlI | ACTAGT | 1 cut(s) | 2639 |
| AjiI | CACGTC | 1 cut(s) | 83 |
| AjnI | CCWGG | 1 cut(s) | 925 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1696, 1728 |
| AleI | CACNNNNGTG | 1 cut(s) | 945 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1185, 1217 |
| Alw21I | GWGCWC | 3 cut(s) | 172, 500, 1675 |
| Alw26I | GTCTC | 3 cut(s) | 1511, 2231, 2399 |
| Alw44I | GTGCAC | 1 cut(s) | 1671 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 565, 926 |
| AoxI | GGCC | 2 cut(s) | 1806, 2185 |
| ApaLI | GTGCAC | 1 cut(s) | 1671 |
| ApeKI | GCWGC | 3 cut(s) | 311, 1652, 1963 |
| ApoI | RAATTY | 4 cut(s) | 637, 751, 857, 2467 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2690, 2722 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1916 |
| AspLEI | GCGC | 2 cut(s) | 334, 674 |
| AspS9I | GGNCC | 5 cut(s) | 923, 1280, 1582, 1730, 2186 |
| AsuC2I | CCSGG | 2 cut(s) | 470, 586 |
| AsuNHI | GCTAGC | 1 cut(s) | 2533 |
| AvaII | GGWCC | 4 cut(s) | 923, 1280, 1582, 1730 |
| BaeGI | GKGCMC | 1 cut(s) | 1675 |
| BamHI | GGATCC | 2 cut(s) | 249, 1499 |
| BanI | GGYRCC | 1 cut(s) | 1820 |
| BanII | GRGCYC | 1 cut(s) | 500 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 966, 998 |
| BauI | CACGAG | 2 cut(s) | 171, 1417 |
| BbsI | GAAGAC | 1 cut(s) | 194 |
| Bbv12I | GWGCWC | 3 cut(s) | 172, 500, 1675 |
| BbvI | GCAGC | 3 cut(s) | 298, 1639, 1950 |
| BccI | CCATC | 4 cut(s) | 606, 1151, 1873, 2209 |
| BceAI | ACGGC | 6 cut(s) | 24, 54, 828, 985, 1793, 2200 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 323, 357 |
| BciT130I | CCWGG | 1 cut(s) | 927 |
| BclI | TGATCA | 1 cut(s) | 1885 |
| BcnI | CCSGG | 2 cut(s) | 470, 586 |
| BcoDI | GTCTC | 3 cut(s) | 1511, 2231, 2399 |
| BcuI | ACTAGT | 1 cut(s) | 2639 |
| BfaI | CTAG | 8 cut(s) | 758, 882, 896, 1656, 2157, 2435, 2534, 2640 |
| BfmI | CTRYAG | 2 cut(s) | 1740, 1964 |
| BfrI | CTTAAG | 2 cut(s) | 229, 1154 |
| BglII | AGATCT | 2 cut(s) | 220, 2668 |
| BisI | GCNGC | 7 cut(s) | 312, 990, 1028, 1653, 1824, 1964, 2538 |
| BlsI | GCNGC | 7 cut(s) | 313, 991, 1029, 1654, 1825, 1965, 2539 |
| Bme1390I | CCNGG | 3 cut(s) | 470, 586, 927 |
| Bme18I | GGWCC | 4 cut(s) | 923, 1280, 1582, 1730 |
| BmgBI | CACGTC | 1 cut(s) | 83 |
| BmgT120I | GGNCC | 5 cut(s) | 923, 1280, 1582, 1730, 2186 |
| BmiI | GGNNCC | 7 cut(s) | 251, 1282, 1501, 1583, 1822, 2074, 2406 |
| BmrFI | CCNGG | 3 cut(s) | 470, 586, 927 |
| BmrI | ACTGGG | 1 cut(s) | 2004 |
| BmsI | GCATC | 3 cut(s) | 56, 343, 1442 |
| BmtI | GCTAGC | 1 cut(s) | 2537 |
| BmuI | ACTGGG | 1 cut(s) | 2004 |
| BpiI | GAAGAC | 1 cut(s) | 194 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 688, 720, 1684, 1716 |
| BpmI | CTGGAG | 2 cut(s) | 2522, 2603 |
| BpuEI | CTTGAG | 6 cut(s) | 312, 1493, 1955, 2298, 2629, 2705 |
| BpuMI | CCSGG | 2 cut(s) | 470, 586 |
| BsaAI | YACGTR | 1 cut(s) | 158 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1470 |
| BsaHI | GRCGYC | 2 cut(s) | 107, 2057 |
| BsaI | GGTCTC | 1 cut(s) | 1511 |
| BsaJI | CCNNGG | 4 cut(s) | 1325, 1577, 1824, 2193 |
| BsaWI | WCCGGW | 7 cut(s) | 246, 457, 604, 660, 1256, 1277, 1502 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 882, 1211, 1256, 1386, 2194 |
| Bse118I | RCCGGY | 1 cut(s) | 985 |
| Bse1I | ACTGG | 5 cut(s) | 253, 741, 1182, 1999, 2600 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1470 |
| BseBI | CCWGG | 1 cut(s) | 927 |
| BseDI | CCNNGG | 4 cut(s) | 1325, 1577, 1824, 2193 |
| BseGI | GGATG | 3 cut(s) | 47, 457, 786 |
| BseJI | GATNNNNATC | 1 cut(s) | 1470 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 882, 1211, 1256, 1386, 2194 |
| BseMII | CTCAG | 6 cut(s) | 138, 162, 342, 1553, 1764, 2565 |
| BseNI | ACTGG | 5 cut(s) | 253, 741, 1182, 1999, 2600 |
| BseRI | GAGGAG | 1 cut(s) | 186 |
| BseSI | GKGCMC | 1 cut(s) | 1675 |
| BseXI | GCAGC | 3 cut(s) | 298, 1639, 1950 |
| Bsh1236I | CGCG | 2 cut(s) | 674, 1826 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2177 |
| BshFI | GGCC | 2 cut(s) | 1808, 2187 |
| BshNI | GGYRCC | 1 cut(s) | 1820 |
| BsiEI | CGRYCG | 1 cut(s) | 2177 |
| BsiHKAI | GWGCWC | 3 cut(s) | 172, 500, 1675 |
| BslFI | GGGAC | 1 cut(s) | 1595 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 882, 1211, 1256, 1386, 2194 |
| BsmAI | GTCTC | 3 cut(s) | 1511, 2231, 2399 |
| BsmBI | CGTCTC | 1 cut(s) | 2399 |
| BsmFI | GGGAC | 1 cut(s) | 1595 |
| BsnI | GGCC | 2 cut(s) | 1808, 2187 |
| Bso31I | GGTCTC | 1 cut(s) | 1511 |
| Bsp1286I | GDGCHC | 3 cut(s) | 172, 500, 1675 |
| BspANI | GGCC | 2 cut(s) | 1808, 2187 |
| BspCNI | CTCAG | 6 cut(s) | 137, 161, 343, 1552, 1765, 2564 |
| BspFNI | CGCG | 2 cut(s) | 674, 1826 |
| BspHI | TCATGA | 1 cut(s) | 889 |
| BspLI | GGNNCC | 7 cut(s) | 251, 1282, 1501, 1583, 1822, 2074, 2406 |
| BspMAI | CTGCAG | 1 cut(s) | 1968 |
| BspOI | GCTAGC | 1 cut(s) | 2537 |
| BspT107I | GGYRCC | 1 cut(s) | 1820 |
| BspTI | CTTAAG | 2 cut(s) | 229, 1154 |
| BspTNI | GGTCTC | 1 cut(s) | 1511 |
| BsrFI | RCCGGY | 1 cut(s) | 985 |
| BsrI | ACTGG | 5 cut(s) | 253, 741, 1182, 1999, 2600 |
| BssAI | RCCGGY | 1 cut(s) | 985 |
| BssECI | CCNNGG | 4 cut(s) | 1325, 1577, 1824, 2193 |
| BssNI | GRCGYC | 2 cut(s) | 107, 2057 |
| BssSI | CACGAG | 2 cut(s) | 171, 1417 |
| BssT1I | CCWWGG | 2 cut(s) | 1325, 1577 |
| Bst2BI | CACGAG | 2 cut(s) | 171, 1417 |
| Bst2UI | CCWGG | 1 cut(s) | 927 |
| Bst4CI | ACNGT | 9 cut(s) | 625, 731, 806, 947, 1677, 1741, 2152, 2251, 2268 |
| Bst6I | CTCTTC | 5 cut(s) | 82, 1036, 1699, 2094, 2343 |
| BstACI | GRCGYC | 2 cut(s) | 107, 2057 |
| BstAFI | CTTAAG | 2 cut(s) | 229, 1154 |
| BstBAI | YACGTR | 1 cut(s) | 158 |
| BstC8I | GCNNGC | 3 cut(s) | 906, 2498, 2535 |
| BstDSI | CCRYGG | 1 cut(s) | 1824 |
| BstEII | GGTNACC | 1 cut(s) | 1456 |
| BstF5I | GGATG | 3 cut(s) | 47, 457, 786 |
| BstFNI | CGCG | 2 cut(s) | 674, 1826 |
| BstHHI | GCGC | 2 cut(s) | 334, 674 |
| BstMAI | GTCTC | 3 cut(s) | 1511, 2231, 2399 |
| BstMCI | CGRYCG | 1 cut(s) | 2177 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 53, 125, 910, 1027, 1165 |
| BstNI | CCWGG | 1 cut(s) | 927 |
| BstNSI | RCATGY | 1 cut(s) | 168 |
| BstPI | GGTNACC | 1 cut(s) | 1456 |
| BstSCI | CCNGG | 3 cut(s) | 468, 584, 925 |
| BstSFI | CTRYAG | 2 cut(s) | 1740, 1964 |
| BstSLI | GKGCMC | 1 cut(s) | 1675 |
| BstUI | CGCG | 2 cut(s) | 674, 1826 |
| BstV1I | GCAGC | 3 cut(s) | 298, 1639, 1950 |
| BstV2I | GAAGAC | 1 cut(s) | 194 |
| BstX2I | RGATCY | 6 cut(s) | 220, 249, 272, 363, 1499, 2668 |
| BstYI | RGATCY | 6 cut(s) | 220, 249, 272, 363, 1499, 2668 |
| BsuRI | GGCC | 2 cut(s) | 1808, 2187 |
| BtgI | CCRYGG | 1 cut(s) | 1824 |
| BtrI | CACGTC | 1 cut(s) | 83 |
| BtsCI | GGATG | 3 cut(s) | 47, 457, 786 |
| BtsI | GCAGTG | 1 cut(s) | 1429 |
| BtsIMutI | CAGTG | 4 cut(s) | 1429, 1461, 1673, 2607 |
| Cac8I | GCNNGC | 3 cut(s) | 906, 2498, 2535 |
| CaiI | CAGNNNCTG | 2 cut(s) | 565, 926 |
| CciI | TCATGA | 1 cut(s) | 889 |
| CfoI | GCGC | 2 cut(s) | 334, 674 |
| Cfr10I | RCCGGY | 1 cut(s) | 985 |
| Cfr13I | GGNCC | 5 cut(s) | 923, 1280, 1582, 1730, 2186 |
| Cfr42I | CCGCGG | 1 cut(s) | 1827 |
| CseI | GACGC | 2 cut(s) | 170, 841 |
| Csp6I | GTAC | 3 cut(s) | 626, 734, 983 |
| CviAII | CATG | 2 cut(s) | 165, 890 |
| CviQI | GTAC | 3 cut(s) | 626, 734, 983 |
| DraI | TTTAAA | 2 cut(s) | 750, 1356 |
| EaeI | YGGCCR | 1 cut(s) | 1806 |
| Eam1104I | CTCTTC | 5 cut(s) | 82, 1036, 1699, 2094, 2343 |
| EarI | CTCTTC | 5 cut(s) | 82, 1036, 1699, 2094, 2343 |
| Ecl136II | GAGCTC | 1 cut(s) | 498 |
| Eco130I | CCWWGG | 2 cut(s) | 1325, 1577 |
| Eco24I | GRGCYC | 1 cut(s) | 500 |
| Eco31I | GGTCTC | 1 cut(s) | 1511 |
| Eco32I | GATATC | 1 cut(s) | 2569 |
| Eco47I | GGWCC | 4 cut(s) | 923, 1280, 1582, 1730 |
| Eco53kI | GAGCTC | 1 cut(s) | 498 |
| Eco57I | CTGAAG | 3 cut(s) | 343, 2118, 2216 |
| Eco91I | GGTNACC | 1 cut(s) | 1456 |
| EcoICRI | GAGCTC | 1 cut(s) | 498 |
| EcoO109I | RGGNCCY | 2 cut(s) | 923, 1582 |
| EcoO65I | GGTNACC | 1 cut(s) | 1456 |
| EcoRII | CCWGG | 1 cut(s) | 925 |
| EcoRV | GATATC | 1 cut(s) | 2569 |
| EcoT14I | CCWWGG | 2 cut(s) | 1325, 1577 |
| EcoT38I | GRGCYC | 1 cut(s) | 500 |
| ErhI | CCWWGG | 2 cut(s) | 1325, 1577 |
| Esp3I | CGTCTC | 1 cut(s) | 2399 |
| FaeI | CATG | 2 cut(s) | 168, 893 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 223, 255, 408, 440 |
| FaqI | GGGAC | 1 cut(s) | 1595 |
| FatI | CATG | 2 cut(s) | 164, 889 |
| FauI | CCCGC | 1 cut(s) | 478 |
| FbaI | TGATCA | 1 cut(s) | 1885 |
| Fnu4HI | GCNGC | 7 cut(s) | 312, 990, 1028, 1653, 1824, 1964, 2538 |
| FokI | GGATG | 3 cut(s) | 34, 464, 793 |
| FriOI | GRGCYC | 1 cut(s) | 500 |
| Fsp4HI | GCNGC | 7 cut(s) | 312, 990, 1028, 1653, 1824, 1964, 2538 |
| FspBI | CTAG | 8 cut(s) | 758, 882, 896, 1656, 2157, 2435, 2534, 2640 |
| GlaI | GCGC | 2 cut(s) | 333, 673 |
| GluI | GCNGC | 7 cut(s) | 312, 990, 1028, 1653, 1824, 1964, 2538 |
| GsuI | CTGGAG | 2 cut(s) | 2522, 2603 |
| HaeIII | GGCC | 2 cut(s) | 1808, 2187 |
| HgaI | GACGC | 2 cut(s) | 170, 841 |
| HhaI | GCGC | 2 cut(s) | 334, 674 |
| Hin1I | GRCGYC | 2 cut(s) | 107, 2057 |
| Hin1II | CATG | 2 cut(s) | 168, 893 |
| Hin6I | GCGC | 2 cut(s) | 332, 672 |
| HinP1I | GCGC | 2 cut(s) | 332, 672 |
| HincII | GTYRAC | 2 cut(s) | 820, 2509 |
| HindII | GTYRAC | 2 cut(s) | 820, 2509 |
| HindIII | AAGCTT | 4 cut(s) | 213, 509, 797, 902 |
| HpaI | GTTAAC | 1 cut(s) | 820 |
| Hpy99I | CGWCG | 8 cut(s) | 87, 109, 112, 345, 779, 796, 1066, 1069 |
| HpyAV | CCTTC | 8 cut(s) | 968, 1092, 1242, 1261, 1379, 2118, 2315, 2423 |
| HpyCH4III | ACNGT | 9 cut(s) | 625, 731, 806, 947, 1677, 1741, 2152, 2251, 2268 |
| HpyCH4IV | ACGT | 9 cut(s) | 75, 82, 107, 157, 340, 981, 2057, 2361, 2392 |
| HpyCH4V | TGCA | 7 cut(s) | 80, 314, 908, 1132, 1433, 1673, 1966 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 53, 125, 910, 1027, 1165 |
| HpySE526I | ACGT | 9 cut(s) | 75, 82, 107, 157, 340, 981, 2057, 2361, 2392 |
| Hsp92I | GRCGYC | 2 cut(s) | 107, 2057 |
| Hsp92II | CATG | 2 cut(s) | 168, 893 |
| HspAI | GCGC | 2 cut(s) | 332, 672 |
| Ksp22I | TGATCA | 1 cut(s) | 1885 |
| KspAI | GTTAAC | 1 cut(s) | 820 |
| KspI | CCGCGG | 1 cut(s) | 1827 |
| LmnI | GCTCC | 6 cut(s) | 421, 495, 503, 1018, 1058, 1828 |
| Lsp1109I | GCAGC | 3 cut(s) | 298, 1639, 1950 |
| LweI | GCATC | 3 cut(s) | 56, 343, 1442 |
| MaeI | CTAG | 8 cut(s) | 758, 882, 896, 1656, 2157, 2435, 2534, 2640 |
| MaeII | ACGT | 9 cut(s) | 75, 82, 107, 157, 340, 981, 2057, 2361, 2392 |
| MflI | RGATCY | 6 cut(s) | 220, 249, 272, 363, 1499, 2668 |
| MhlI | GDGCHC | 3 cut(s) | 172, 500, 1675 |
| MlyI | GAGTC | 3 cut(s) | 394, 2124, 2605 |
| MmeI | TCCRAC | 2 cut(s) | 864, 1371 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1916 |
| MslI | CAYNNNNRTG | 1 cut(s) | 945 |
| MspA1I | CMGCKG | 2 cut(s) | 1668, 1826 |
| MspCI | CTTAAG | 2 cut(s) | 229, 1154 |
| MspR9I | CCNGG | 3 cut(s) | 470, 586, 927 |
| MvaI | CCWGG | 1 cut(s) | 927 |
| MvnI | CGCG | 2 cut(s) | 674, 1826 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 53, 125, 910, 1027, 1165 |
| NciI | CCSGG | 2 cut(s) | 470, 586 |
| NheI | GCTAGC | 1 cut(s) | 2533 |
| NlaIII | CATG | 2 cut(s) | 168, 893 |
| NlaIV | GGNNCC | 7 cut(s) | 251, 1282, 1501, 1583, 1822, 2074, 2406 |
| NmuCI | GTSAC | 6 cut(s) | 158, 378, 1456, 1489, 1677, 1696 |
| NspI | RCATGY | 1 cut(s) | 168 |
| OliI | CACNNNNGTG | 1 cut(s) | 945 |
| PagI | TCATGA | 1 cut(s) | 889 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2478 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1916 |
| PkrI | GCNGC | 7 cut(s) | 313, 991, 1029, 1654, 1825, 1965, 2539 |
| Ple19I | CGATCG | 1 cut(s) | 2177 |
| PleI | GAGTC | 3 cut(s) | 393, 2123, 2604 |
| PpsI | GAGTC | 3 cut(s) | 393, 2123, 2604 |
| Ppu21I | YACGTR | 1 cut(s) | 158 |
| PpuMI | RGGWCCY | 2 cut(s) | 923, 1582 |
| Psp124BI | GAGCTC | 1 cut(s) | 500 |
| Psp1406I | AACGTT | 2 cut(s) | 75, 2361 |
| Psp5II | RGGWCCY | 2 cut(s) | 923, 1582 |
| Psp6I | CCWGG | 1 cut(s) | 925 |
| PspEI | GGTNACC | 1 cut(s) | 1456 |
| PspGI | CCWGG | 1 cut(s) | 925 |
| PspN4I | GGNNCC | 7 cut(s) | 251, 1282, 1501, 1583, 1822, 2074, 2406 |
| PspPI | GGNCC | 5 cut(s) | 923, 1280, 1582, 1730, 2186 |
| PspPPI | RGGWCCY | 2 cut(s) | 923, 1582 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1230, 1262 |
| PstI | CTGCAG | 1 cut(s) | 1968 |
| PstNI | CAGNNNCTG | 2 cut(s) | 565, 926 |
| PsuI | RGATCY | 6 cut(s) | 220, 249, 272, 363, 1499, 2668 |
| PvuI | CGATCG | 1 cut(s) | 2177 |
| PvuII | CAGCTG | 1 cut(s) | 1668 |
| RsaI | GTAC | 3 cut(s) | 627, 735, 984 |
| RsaNI | GTAC | 3 cut(s) | 626, 734, 983 |
| RseI | CAYNNNNRTG | 1 cut(s) | 945 |
| SacI | GAGCTC | 1 cut(s) | 500 |
| SacII | CCGCGG | 1 cut(s) | 1827 |
| SatI | GCNGC | 7 cut(s) | 312, 990, 1028, 1653, 1824, 1964, 2538 |
| Sau96I | GGNCC | 5 cut(s) | 923, 1280, 1582, 1730, 2186 |
| SchI | GAGTC | 3 cut(s) | 394, 2124, 2605 |
| ScrFI | CCNGG | 3 cut(s) | 470, 586, 927 |
| SduI | GDGCHC | 3 cut(s) | 172, 500, 1675 |
| SfaNI | GCATC | 3 cut(s) | 56, 343, 1442 |
| SfcI | CTRYAG | 2 cut(s) | 1740, 1964 |
| Sfr303I | CCGCGG | 1 cut(s) | 1827 |
| SgrBI | CCGCGG | 1 cut(s) | 1827 |
| SinI | GGWCC | 4 cut(s) | 923, 1280, 1582, 1730 |
| SmiI | ATTTAAAT | 1 cut(s) | 750 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 945 |
| SmlI | CTYRAG | 8 cut(s) | 229, 327, 1154, 1508, 1934, 2313, 2608, 2684 |
| SmoI | CTYRAG | 8 cut(s) | 229, 327, 1154, 1508, 1934, 2313, 2608, 2684 |
| SpeI | ACTAGT | 1 cut(s) | 2639 |
| SspMI | CTAG | 8 cut(s) | 758, 882, 896, 1656, 2157, 2435, 2534, 2640 |
| SstI | GAGCTC | 1 cut(s) | 500 |
| StyD4I | CCNGG | 3 cut(s) | 468, 584, 925 |
| StyI | CCWWGG | 2 cut(s) | 1325, 1577 |
| SwaI | ATTTAAAT | 1 cut(s) | 750 |
| TaaI | ACNGT | 9 cut(s) | 625, 731, 806, 947, 1677, 1741, 2152, 2251, 2268 |
| TaiI | ACGT | 9 cut(s) | 78, 85, 110, 160, 343, 984, 2060, 2364, 2395 |
| TaqII | GACCGA | 1 cut(s) | 1444 |
| TatI | WGTACW | 1 cut(s) | 733 |
| TauI | GCSGC | 4 cut(s) | 992, 1030, 1826, 2540 |
| TscAI | CASTG | 4 cut(s) | 1429, 1468, 1680, 2607 |
| TseFI | GTSAC | 6 cut(s) | 158, 378, 1456, 1489, 1677, 1696 |
| TseI | GCWGC | 3 cut(s) | 311, 1652, 1963 |
| Tsp45I | GTSAC | 6 cut(s) | 158, 378, 1456, 1489, 1677, 1696 |
| TspDTI | ATGAA | 4 cut(s) | 540, 878, 2387, 2643 |
| TspGWI | ACGGA | 3 cut(s) | 660, 1194, 1283 |
| TspRI | CASTG | 4 cut(s) | 1429, 1468, 1680, 2607 |
| Vha464I | CTTAAG | 2 cut(s) | 229, 1154 |
| VneI | GTGCAC | 1 cut(s) | 1671 |
| VpaK11BI | GGWCC | 4 cut(s) | 923, 1280, 1582, 1730 |
| XapI | RAATTY | 4 cut(s) | 637, 751, 857, 2467 |
| XceI | RCATGY | 1 cut(s) | 168 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1387 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1916 |
| XspI | CTAG | 8 cut(s) | 758, 882, 896, 1656, 2157, 2435, 2534, 2640 |
| ZraI | GACGTC | 2 cut(s) | 108, 2058 |