Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007059

Physical Location & Seq

Genomic Coordinates Forward (+)

18918272 .. 18923639

Gene Structure 5368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24540.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3171 bp

ATGCCTACGCCAGTTTCTGTAGCCAGGCAATGCTTAACACCGGAGGCAACCCACGCGCTCGACGAGGCGGTGTCCGTCGCGCGCCGCAGAAGCCACGCGCAGACCACATCCCTCCACGCAGTCTCTGCTCTACTCTCCCTCCCCAACTCCGCCCTACGCGAGGCCTGCGCGCGTGCTCGCAACGGGGCCTACTCGCCGCGGCTCCAGTTCAAGGCGCTGGAGCTCTGCCTCAGCGTATCCCTGGACCGGGTCTCGTCGTCGACCCGGCAGCTCAGCGACGACGACCCGCCCGTTTCGAACTCCCTCATGGCCGCCATCAAGCGCTCTCAGGCCAACCAGCGACGGCAGCCGGAGAATTATCACCTCTACCATCAGCTCCAGCAACAACAGTCGTCCATGTCCTGCGTTAAGGTCGAGCTCCAGCATCTTATTCTCTCCATTCTCGACGACCCGGTTGTCAGTCGGGTCTTCGCGGAAGCGGGTTTCCGGAGCTCCGAAATCAAGATGGCCATCCTCCGCCCTTTTCCTCCTCTTCCTCTGTTTCTCCATAATCCGGGTCCGGGTCCGGGTCCCGGTCCGGGTCGTCGTCGCCGGCCCGTTTTCCCGTTCTCGGGTTTCGCCAACGGAGACGAGAATTGTCGGAGAATTGGAGAAGTTTTAGGAAGAAACAGGAATCCTCTGCTCCTGGGTGTATGTGCTTACGAAGCTCTTCACATGTTCATGGCATCGTTAACTAAAGAAGGTATCTTACCGGTGGAGCTGTCCGGTGTGAGTTCAGTTTCGATCGAAAAAGAGTTATCTCAGTTTACATTAACTGATTCCGACAAAGGGTGCTTGAGTTCGAGGCTGGCCGAGGTGGGTGAGTTAGTGGACAAGTGTTTGGGAGGTGGAGTTGTGGTGAATATTGGAGACTTGAAGATGCTAGTTGGGGAGGAGTGTTTGGGTGAGTCAGTGAGATATGTGGTGGCCCAGTTGACTAGGCTGGTGGAGGTTTACCGGGGAAGTGTTTGGTTCGTTGGAGCTACGGCGAGCTATGGGAGCTACTTGAAGTTTGTGAGTATGTTTCCGTCGGTAGAGAAAGACTGGGACTTGCAGCTTCTGCCGATCACTTCGGTTGGAGCTGAATCATACCCGAGGTCCAGCTTGATGGAGTCATTTGTTCCACTTGGTGGGTTCTTTTCTGCACCTTCTGACCTAAAGCTTCCGTTAAGTTGTTCAAATGGGTTATTTCCCCTCGATCATCAGTGCAGTGAAAAAGATGATCAAGAAGCATATGCTTTTCCGAAGGGAGGCTTTGCTACTTCAGTGGCAGGTCAGCATGCTAGCTTGCCTTCTTGGATGTGGATGGCTCCACTTGGCACAAACAAGGGGTTGGATATGAAGACCAAAGACGATGGAGTGCTATTGAGTTCCAAAGTTACAGGACTGCAAAAGAAATGGGATAATACACATGAATCTCATCCCTTGCCTTTAGCAAACTTGTTTCCAACTATTGTGGGCTTTGAGTCTGGTGAAGACAAGAAGCACATTCACAGCAAGAAGACCAATATTTCTTCAAATGAAAAGTCATGCATCCCCACAGATGTGCAAGAGATATCCTCATCTCAGTCCAAGAGTGAAAGTTTCTCTTCCGGGGTATGGGAAAAACCTACAAAAGATGAAGATACTGAATCGGGTAGTGTCAAGTCTTCTTGTAGTTTGTACAATTCAAGCATGGTTGAGGGTAGCCGAACATCTCCAACATCTTCGACTTCTGTGACAACAGATTTAGGATTAGGAATATGCTCTTCTCCTGCTAGTAAGTTGAACTTAAATCTGAATCAAGGTAGTCAACATGACATGTCAGTTTTCTCTTCTGGAAATTCCTCTATTTACACTGCTCAGTCATCATTCTGCTCAAGGGCTGACAAACATGGGCAGTTTGATCCAAGTGATGTCAAGATGCTTTTGAGAGCTCTCTTTGAGAGAGTGAGCTGGCAAACTGAGGCTATAAGTGCTATTAGCCAACGAATAGCGCATTGCCGATCAAGAAGTGAACACCGGACTGGATGTAGGCACAGAAGGGATATATGGTTCAACTTTGTTGGACCAGATAGGTATGGTAAAAAGAAAATTGCTAGTGTGCTCGCTGAGTTATTATACGGGAGCCAGGAACAACTGATCTGTGTGGATCTGAATTCTCAGGATGGATTGCTCCATTCAGACACAATGTTCGGTGGTCAAGTGTTGAATGGTTATGATGCAAAGTATAGAGGTAAGACAGTTGTTGATTATGTGGCTGGAGAACTCTGCAGGAAACCATTGTCAATTGTGTTCCTGGAAAATGTAGACAAGGCAGATGTCGTTGCTCAGCATAGTTTGTCCCAGGCGGTTTTGAGCGGTAAGTTTTCAGATTCCCATGGAAGACAAGTCAGCACAAGTAATGCAGTGTTTATTACAACTACAGAAAAGGGCTGCAGCACTCTCACTTCCAAAAGGGTTCCTTCCAAATATTCCGAGGAAAAAATCTCACAAGCAAAAGGGTGGCCCGTTCAGATTACAGTTGAATGCGCACTTGATGGCAGGGCTGTAAGCCAAAACTGGACAACATCCTCCAATACAACTAAAGAAAGCATCCCTCATTTTCTGAACAAAAGGAAGCTGTCTGGTGTGGGCAAACCTCTAGAGCAGCATTCAGTCTCAGAGATGAGTAAACGGCCTAACAAAACGTCGACTAGGTTTCTGGATCTCAACCTTCCAGCTGAAGAGAATGCAGTGCAACATCTAGACGCTGATGACTGCTTGTCAGAAAACTCCAGTCCCTGGTTGCAAGAATTCACTGATCAGTTTGATGAAACAGTGGCATTCAAGCCGGTTGATTTCGATGCACTTGCTGAGAATATATCAAAGCAGATCAAAAACAGTTTCCACCAGCTCATTGGTTCAGAGTGCTTGCTAGAAATCGACACACAAGTCATGGAACGACTACTTGCAGCCGCATATCTTTCCAACAAGTACAACGTGGTGGAAAACTGGGTAGACCAAGTCTTGAGCAGAAGATTCGCAGAGGTCCAGAAGCGACACAACCTGAATGCTCATACTATCGTAACACTCAAAGCTTGCGACGGCTTTTGCTTGGAGGAGGAGTCATCTCCGGAAGACTACCTCCCACCCGAAATCATACTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0010033 GO:0014070 GO:0033993 GO:0042221 GO:0050896 GO:1901700 GO:1902347

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_2 Clp_N

Protein Analysis

1057

Amino Acids

116.1

Weight (kDa)

6.36

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NBD_SMAX1	PF23569	212 - 373	3.4e-17	SMAX1 nucleotide binding domain
AAA_lid_SMAX1	PF26587	928 - 1011	3.8e-30	SMAX1-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40130 AT2G40130
fragaria_vesca	FvH4_7g24540 FvH4_7g24540
malus_domestica	MD01G1153400.v1.1 MD07G1222400.v1.1
prunus_persica	Prupe.2G250700_v2.0.a1 Prupe.2G250700_v2.0.a1
pyrus_communis	pycom01g17100 pycom07g20100 pycom07g20110
rosa_chinensis	RchiOBHm_Chr1g0370371
rosa_laevigata	RLG00000027054
rosa_multiflora	Rmu_co8224134.1_g000001 Rmu_co8315027.1_g000001 Rmu_sc0006707.1_g000030 Rmu_sc0029129.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286640
rosa_rugosa	Rorug01G0355800 Rorug01G0355900
rosa_samantha	Rh1AG364200 Rh1BG327500 Rh1CG340500 Rh1DG357800
rosa_wichuraiana	Rw1G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	455, 2951
Acc16I	TGCGCA	1 cut(s)	2551
Acc36I	ACCTGC	1 cut(s)	1301
AccB7I	CCANNNNNTGG	2 cut(s)	1169, 2802
AccBSI	CCGCTC	1 cut(s)	2379
AccI	GTMKAC	4 cut(s)	260, 2328, 2711, 3018
AccII	CGCG	9 cut(s)	56, 80, 82, 98, 159, 170, 172, 199, 473
AccIII	TCCGGA	2 cut(s)	486, 3133
AclWI	GGATC	3 cut(s)	1919, 2178, 2733
AcoI	YGGCCR	3 cut(s)	309, 507, 849
AcsI	RAATTY	3 cut(s)	1861, 2176, 2813
AcuI	CTGAAG	2 cut(s)	1287, 2763
AdeI	CACNNNGTG	1 cut(s)	1169
AfaI	GTAC	2 cut(s)	1703, 2996
AfeI	AGCGCT	1 cut(s)	323
AflIII	ACRYGT	2 cut(s)	714, 1839
AgeI	ACCGGT	1 cut(s)	751
AhdI	GACNNNNNGTC	1 cut(s)	2782
AjnI	CCWGG	7 cut(s)	23, 240, 684, 2148, 2316, 2364, 2801
AleI	CACNNNNGTG	1 cut(s)	1583
AloI	GAACNNNNNNTCC	2 cut(s)	2057, 2089
Alw21I	GWGCWC	6 cut(s)	178, 225, 420, 494, 1957, 2127
Alw26I	GTCTC	5 cut(s)	127, 256, 621, 903, 2683
AlwI	GGATC	3 cut(s)	1919, 2178, 2733
AlwNI	CAGNNNCTG	4 cut(s)	17, 125, 1099, 2802
Ama87I	CYCGRG	2 cut(s)	610, 1132
Aor13HI	TCCGGA	2 cut(s)	486, 3133
Aor51HI	AGCGCT	1 cut(s)	323
ApeKI	GCWGC	7 cut(s)	268, 346, 1093, 2454, 2457, 2668, 2972
ApoI	RAATTY	3 cut(s)	1861, 2176, 2813
ArsI	GACNNNNNNTTYG	4 cut(s)	1550, 1582, 2195, 2227
AsiGI	ACCGGT	1 cut(s)	751
Asp700I	GAANNNNTTC	1 cut(s)	708
AsuHPI	GGTGA	5 cut(s)	353, 872, 910, 956, 1523
AsuII	TTCGAA	1 cut(s)	296
AsuNHI	GCTAGC	1 cut(s)	1322
AvaI	CYCGRG	2 cut(s)	610, 1132
AvaII	GGWCC	8 cut(s)	244, 557, 563, 569, 575, 1137, 2087, 3049
BalI	TGGCCA	1 cut(s)	509
BanII	GRGCYC	4 cut(s)	225, 420, 494, 1957
BarI	GAAGNNNNNNTAC	2 cut(s)	732, 764
BbsI	GAAGAC	7 cut(s)	460, 1388, 1521, 1547, 1680, 2410, 3144
Bbv12I	GWGCWC	6 cut(s)	178, 225, 420, 494, 1957, 2127
BbvCI	CCTCAGC	1 cut(s)	230
BbvI	GCAGC	7 cut(s)	280, 358, 1105, 2441, 2469, 2680, 2984
BccI	CCATC	9 cut(s)	323, 378, 499, 518, 1141, 1339, 1388, 2180, 2552
BceAI	ACGGC	4 cut(s)	359, 1041, 2711, 3121
BcgI	CGANNNNNNTGC	4 cut(s)	2852, 2886, 3022, 3056
BciT130I	CCWGG	7 cut(s)	25, 242, 686, 2150, 2318, 2366, 2803
BciVI	GTATCC	1 cut(s)	247
BclI	TGATCA	2 cut(s)	1261, 2821
BcoDI	GTCTC	5 cut(s)	127, 256, 621, 903, 2683
BfaI	CTAG	9 cut(s)	923, 978, 1323, 1797, 2118, 2663, 2715, 2765, 2936
BfmI	CTRYAG	4 cut(s)	18, 2290, 2442, 2455
BfoI	RGCGCY	2 cut(s)	218, 325
BfuAI	ACCTGC	1 cut(s)	1301
BfuI	GTATCC	1 cut(s)	247
BlpI	GCTNAGC	2 cut(s)	272, 2349
Bme18I	GGWCC	8 cut(s)	244, 557, 563, 569, 575, 1137, 2087, 3049
BmeRI	GACNNNNNGTC	1 cut(s)	2782
BmeT110I	CYCGRG	2 cut(s)	610, 1132
BmiI	GGNNCC	9 cut(s)	187, 203, 558, 564, 570, 571, 1350, 2147, 2481
BmrI	ACTGGG	3 cut(s)	964, 1093, 3022
BmsI	GCATC	8 cut(s)	433, 734, 909, 1581, 1932, 2230, 2622, 2854
BmtI	GCTAGC	1 cut(s)	1326
BmuI	ACTGGG	3 cut(s)	964, 1093, 3022
BpiI	GAAGAC	7 cut(s)	460, 1388, 1521, 1547, 1680, 2410, 3144
BplI	GAGNNNNNCTC	2 cut(s)	1583, 1615
BpmI	CTGGAG	6 cut(s)	188, 239, 362, 404, 2301, 2779
Bpu10I	CCTNAGC	1 cut(s)	230
Bpu1102I	GCTNAGC	2 cut(s)	272, 2349
Bpu14I	TTCGAA	1 cut(s)	296
BpuEI	CTTGAG	3 cut(s)	856, 1882, 3049
BsaBI	GATNNNNATC	1 cut(s)	509
BsaI	GGTCTC	1 cut(s)	256
BsaWI	WCCGGW	6 cut(s)	40, 486, 751, 764, 2040, 3133
BsaXI	ACNNNNNCTCC	8 cut(s)	123, 153, 876, 882, 906, 912, 3110, 3140
Bse118I	RCCGGY	3 cut(s)	591, 751, 2851
Bse1I	ACTGG	8 cut(s)	11, 205, 970, 1088, 2050, 2585, 2796, 3017
Bse3DI	GCAATG	2 cut(s)	35, 2017
Bse8I	GATNNNNATC	1 cut(s)	509
BseAI	TCCGGA	2 cut(s)	486, 3133
BseBI	CCWGG	7 cut(s)	25, 242, 686, 2150, 2318, 2366, 2803
BseJI	GATNNNNATC	1 cut(s)	509
BseMI	GCAATG	2 cut(s)	35, 2017
BseNI	ACTGG	8 cut(s)	11, 205, 970, 1088, 2050, 2585, 2796, 3017
BsePI	GCGCGC	2 cut(s)	80, 168
BseRI	GAGGAG	4 cut(s)	519, 947, 3134, 3137
BseXI	GCAGC	7 cut(s)	280, 358, 1105, 2441, 2469, 2680, 2984
BsgI	GTGCAG	2 cut(s)	1167, 1267
Bsh1236I	CGCG	9 cut(s)	56, 80, 82, 98, 159, 170, 172, 199, 473
Bsh1285I	CGRYCG	1 cut(s)	786
BshTI	ACCGGT	1 cut(s)	751
BsiEI	CGRYCG	1 cut(s)	786
BsiHKAI	GWGCWC	6 cut(s)	178, 225, 420, 494, 1957, 2127
BsiHKCI	CYCGRG	2 cut(s)	610, 1132
BslFI	GGGAC	4 cut(s)	555, 1100, 2347, 2784
BsmAI	GTCTC	5 cut(s)	127, 256, 621, 903, 2683
BsmBI	CGTCTC	1 cut(s)	621
BsmFI	GGGAC	4 cut(s)	555, 1100, 2347, 2784
BsmI	GAATGC	5 cut(s)	2552, 2671, 2755, 2843, 3076
Bso31I	GGTCTC	1 cut(s)	256
BsoBI	CYCGRG	2 cut(s)	610, 1132
Bsp119I	TTCGAA	1 cut(s)	296
Bsp1286I	GDGCHC	6 cut(s)	178, 225, 420, 494, 1957, 2127
Bsp13I	TCCGGA	2 cut(s)	486, 3133
Bsp1407I	TGTACA	1 cut(s)	1701
Bsp1720I	GCTNAGC	2 cut(s)	272, 2349
Bsp19I	CCATGG	1 cut(s)	2398
BspEI	TCCGGA	2 cut(s)	486, 3133
BspFNI	CGCG	9 cut(s)	56, 80, 82, 98, 159, 170, 172, 199, 473
BspLI	GGNNCC	9 cut(s)	187, 203, 558, 564, 570, 571, 1350, 2147, 2481
BspMAI	CTGCAG	2 cut(s)	2294, 2459
BspMI	ACCTGC	1 cut(s)	1301
BspOI	GCTAGC	1 cut(s)	1326
BspPI	GGATC	3 cut(s)	1919, 2178, 2733
BspQI	GCTCTTC	2 cut(s)	714, 1792
BspT104I	TTCGAA	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	2379
BsrDI	GCAATG	2 cut(s)	35, 2017
BsrFI	RCCGGY	3 cut(s)	591, 751, 2851
BsrGI	TGTACA	1 cut(s)	1701
BsrI	ACTGG	8 cut(s)	11, 205, 970, 1088, 2050, 2585, 2796, 3017
BssAI	RCCGGY	3 cut(s)	591, 751, 2851
BssHII	GCGCGC	2 cut(s)	80, 168
BssT1I	CCWWGG	1 cut(s)	2398
Bst2UI	CCWGG	7 cut(s)	25, 242, 686, 2150, 2318, 2366, 2803
Bst4CI	ACNGT	5 cut(s)	390, 2263, 2542, 2839, 2903
Bst6I	CTCTTC	6 cut(s)	537, 714, 1633, 1792, 1858, 2739
BstAPI	GCANNNNNTGC	2 cut(s)	125, 1099
BstAUI	TGTACA	1 cut(s)	1701
BstBI	TTCGAA	1 cut(s)	296
BstDSI	CCRYGG	2 cut(s)	197, 2398
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstFNI	CGCG	9 cut(s)	56, 80, 82, 98, 159, 170, 172, 199, 473
BstH2I	RGCGCY	2 cut(s)	218, 325
BstMAI	GTCTC	5 cut(s)	127, 256, 621, 903, 2683
BstMCI	CGRYCG	1 cut(s)	786
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 90, 125, 165, 346, 704, 1038, 1099, 1994
BstNI	CCWGG	7 cut(s)	25, 242, 686, 2150, 2318, 2366, 2803
BstNSI	RCATGY	3 cut(s)	718, 1322, 1843
BstSFI	CTRYAG	4 cut(s)	18, 2290, 2442, 2455
BstUI	CGCG	9 cut(s)	56, 80, 82, 98, 159, 170, 172, 199, 473
BstV1I	GCAGC	7 cut(s)	280, 358, 1105, 2441, 2469, 2680, 2984
BstV2I	GAAGAC	7 cut(s)	460, 1388, 1521, 1547, 1680, 2410, 3144
BstX2I	RGATCY	2 cut(s)	2170, 2725
BstXI	CCANNNNNNTGG	2 cut(s)	1147, 2918
BstYI	RGATCY	2 cut(s)	2170, 2725
BsuI	GTATCC	1 cut(s)	247
BtgI	CCRYGG	2 cut(s)	197, 2398
BtsI	GCAGTG	4 cut(s)	1255, 1875, 2433, 2760
BtsIMutI	CAGTG	9 cut(s)	957, 1250, 1255, 1311, 1875, 2433, 2760, 2817, 2844
BveI	ACCTGC	1 cut(s)	1301
CaiI	CAGNNNCTG	4 cut(s)	17, 125, 1099, 2802
Cfr10I	RCCGGY	3 cut(s)	591, 751, 2851
Cfr42I	CCGCGG	1 cut(s)	200
CpoI	CGGWCCG	1 cut(s)	575
CseI	GACGC	1 cut(s)	2777
Csp6I	GTAC	2 cut(s)	1702, 2995
CspAI	ACCGGT	1 cut(s)	751
CspCI	CAANNNNNGTGG	2 cut(s)	1476, 1511
CspI	CGGWCCG	1 cut(s)	575
CviQI	GTAC	2 cut(s)	1702, 2995
DraIII	CACNNNGTG	1 cut(s)	1169
DrdI	GACNNNNNNGTC	2 cut(s)	455, 2951
DriI	GACNNNNNGTC	1 cut(s)	2782
DseDI	GACNNNNNNGTC	2 cut(s)	455, 2951
EaeI	YGGCCR	3 cut(s)	309, 507, 849
Eam1104I	CTCTTC	6 cut(s)	537, 714, 1633, 1792, 1858, 2739
Eam1105I	GACNNNNNGTC	1 cut(s)	2782
EarI	CTCTTC	6 cut(s)	537, 714, 1633, 1792, 1858, 2739
EciI	GGCGGA	2 cut(s)	139, 506
Ecl136II	GAGCTC	4 cut(s)	223, 418, 492, 1955
Eco130I	CCWWGG	1 cut(s)	2398
Eco147I	AGGCCT	1 cut(s)	164
Eco24I	GRGCYC	4 cut(s)	225, 420, 494, 1957
Eco31I	GGTCTC	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	1596
Eco47I	GGWCC	8 cut(s)	244, 557, 563, 569, 575, 1137, 2087, 3049
Eco47III	AGCGCT	1 cut(s)	323
Eco53kI	GAGCTC	4 cut(s)	223, 418, 492, 1955
Eco57I	CTGAAG	2 cut(s)	1287, 2763
Eco88I	CYCGRG	2 cut(s)	610, 1132
EcoICRI	GAGCTC	4 cut(s)	223, 418, 492, 1955
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoO109I	RGGNCCY	2 cut(s)	186, 569
EcoRI	GAATTC	2 cut(s)	2176, 2813
EcoRII	CCWGG	7 cut(s)	23, 240, 684, 2148, 2316, 2364, 2801
EcoRV	GATATC	1 cut(s)	1596
EcoT14I	CCWWGG	1 cut(s)	2398
EcoT22I	ATGCAT	1 cut(s)	1574
EcoT38I	GRGCYC	4 cut(s)	225, 420, 494, 1957
ErhI	CCWWGG	1 cut(s)	2398
Esp3I	CGTCTC	1 cut(s)	621
FalI	AAGNNNNNCTT	8 cut(s)	1277, 1309, 1612, 1644, 1793, 1825, 2467, 2499
FaqI	GGGAC	4 cut(s)	555, 1100, 2347, 2784
FauI	CCCGC	2 cut(s)	294, 472
FauNDI	CATATG	1 cut(s)	1273
FbaI	TGATCA	2 cut(s)	1261, 2821
FblI	GTMKAC	4 cut(s)	260, 2328, 2711, 3018
FriOI	GRGCYC	4 cut(s)	225, 420, 494, 1957
FspAI	RTGCGCAY	1 cut(s)	2551
FspBI	CTAG	9 cut(s)	923, 978, 1323, 1797, 2118, 2663, 2715, 2765, 2936
FspI	TGCGCA	1 cut(s)	2551
GsuI	CTGGAG	6 cut(s)	188, 239, 362, 404, 2301, 2779
HaeII	RGCGCY	2 cut(s)	218, 325
HgaI	GACGC	1 cut(s)	2777
HincII	GTYRAC	5 cut(s)	261, 732, 975, 1832, 2712
HindII	GTYRAC	5 cut(s)	261, 732, 975, 1832, 2712
HindIII	AAGCTT	2 cut(s)	1199, 3096
HpaI	GTTAAC	1 cut(s)	732
HphI	GGTGA	5 cut(s)	353, 872, 910, 956, 1523
HpyAV	CCTTC	7 cut(s)	734, 1197, 1279, 1341, 2055, 2493, 2744
HpyCH4III	ACNGT	5 cut(s)	390, 2263, 2542, 2839, 2903
HpyCH4IV	ACGT	2 cut(s)	2708, 3000
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 90, 125, 165, 346, 704, 1038, 1099, 1994
HpySE526I	ACGT	2 cut(s)	2708, 3000
KflI	GGGWCCC	1 cut(s)	569
Kpn2I	TCCGGA	2 cut(s)	486, 3133
KroI	GCCGGC	1 cut(s)	591
KroNI	GCCGGC	1 cut(s)	593
Ksp22I	TGATCA	2 cut(s)	1261, 2821
KspAI	GTTAAC	1 cut(s)	732
KspI	CCGCGG	1 cut(s)	200
LguI	GCTCTTC	2 cut(s)	714, 1792
Lsp1109I	GCAGC	7 cut(s)	280, 358, 1105, 2441, 2469, 2680, 2984
LweI	GCATC	8 cut(s)	433, 734, 909, 1581, 1932, 2230, 2622, 2854
MaeI	CTAG	9 cut(s)	923, 978, 1323, 1797, 2118, 2663, 2715, 2765, 2936
MaeII	ACGT	2 cut(s)	2708, 3000
MaeIII	GTNAC	3 cut(s)	1417, 1756, 3085
MbiI	CCGCTC	1 cut(s)	2379
MfeI	CAATTG	1 cut(s)	2307
MflI	RGATCY	2 cut(s)	2170, 2725
MhlI	GDGCHC	6 cut(s)	178, 225, 420, 494, 1957, 2127
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	9 cut(s)	355, 634, 645, 1705, 1861, 2112, 2176, 2307, 2813
MluNI	TGGCCA	1 cut(s)	509
MlyI	GAGTC	4 cut(s)	956, 1160, 1514, 3134
MmeI	TCCRAC	9 cut(s)	620, 846, 997, 1096, 1353, 1511, 1763, 2065, 3012
Mox20I	TGGCCA	1 cut(s)	509
Mph1103I	ATGCAT	1 cut(s)	1574
MroI	TCCGGA	2 cut(s)	486, 3133
MroNI	GCCGGC	1 cut(s)	591
MroXI	GAANNNNTTC	1 cut(s)	708
MscI	TGGCCA	1 cut(s)	509
MseI	TTAA	6 cut(s)	35, 408, 731, 812, 1208, 1811
MslI	CAYNNNNRTG	2 cut(s)	719, 1583
Msp20I	TGGCCA	1 cut(s)	509
MspA1I	CMGCKG	2 cut(s)	199, 2741
MunI	CAATTG	1 cut(s)	2307
Mva1269I	GAATGC	5 cut(s)	2552, 2671, 2755, 2843, 3076
MvaI	CCWGG	7 cut(s)	25, 242, 686, 2150, 2318, 2366, 2803
MvnI	CGCG	9 cut(s)	56, 80, 82, 98, 159, 170, 172, 199, 473
MwoI	GCNNNNNNNGC	9 cut(s)	53, 90, 125, 165, 346, 704, 1038, 1099, 1994
NaeI	GCCGGC	1 cut(s)	593
NcoI	CCATGG	1 cut(s)	2398
NdeI	CATATG	1 cut(s)	1273
NgoMIV	GCCGGC	1 cut(s)	591
NheI	GCTAGC	1 cut(s)	1322
NlaIV	GGNNCC	9 cut(s)	187, 203, 558, 564, 570, 571, 1350, 2147, 2481
NmeAIII	GCCGAG	1 cut(s)	877
NmuCI	GTSAC	1 cut(s)	1756
NsbI	TGCGCA	1 cut(s)	2551
NsiI	ATGCAT	1 cut(s)	1574
NspI	RCATGY	3 cut(s)	718, 1322, 1843
NspV	TTCGAA	1 cut(s)	296
OliI	CACNNNNGTG	1 cut(s)	1583
PaeI	GCATGC	1 cut(s)	1322
PauI	GCGCGC	2 cut(s)	80, 168
PceI	AGGCCT	1 cut(s)	164
PciI	ACATGT	2 cut(s)	714, 1839
PciSI	GCTCTTC	2 cut(s)	714, 1792
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 288
PctI	GAATGC	5 cut(s)	2552, 2671, 2755, 2843, 3076
PdiI	GCCGGC	1 cut(s)	593
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	8 cut(s)	673, 818, 1124, 1454, 1670, 1819, 2393, 3039
PflFI	GACNNNGTC	2 cut(s)	248, 3023
PflMI	CCANNNNNTGG	2 cut(s)	1169, 2802
PfoI	TCCNGGA	1 cut(s)	2316
PinAI	ACCGGT	1 cut(s)	751
Ple19I	CGATCG	1 cut(s)	786
PleI	GAGTC	4 cut(s)	955, 1159, 1513, 3133
PpsI	GAGTC	4 cut(s)	955, 1159, 1513, 3133
PpuMI	RGGWCCY	1 cut(s)	569
PscI	ACATGT	2 cut(s)	714, 1839
Psp124BI	GAGCTC	4 cut(s)	225, 420, 494, 1957
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	7 cut(s)	23, 240, 684, 2148, 2316, 2364, 2801
PspGI	CCWGG	7 cut(s)	23, 240, 684, 2148, 2316, 2364, 2801
PspN4I	GGNNCC	9 cut(s)	187, 203, 558, 564, 570, 571, 1350, 2147, 2481
PspPPI	RGGWCCY	1 cut(s)	569
PstI	CTGCAG	2 cut(s)	2294, 2459
PstNI	CAGNNNCTG	4 cut(s)	17, 125, 1099, 2802
PsuI	RGATCY	2 cut(s)	2170, 2725
PsyI	GACNNNGTC	2 cut(s)	248, 3023
PteI	GCGCGC	2 cut(s)	80, 168
PvuI	CGATCG	1 cut(s)	786
PvuII	CAGCTG	1 cut(s)	2741
RsaI	GTAC	2 cut(s)	1703, 2996
RsaNI	GTAC	2 cut(s)	1702, 2995
RseI	CAYNNNNRTG	2 cut(s)	719, 1583
Rsr2I	CGGWCCG	1 cut(s)	575
RsrII	CGGWCCG	1 cut(s)	575
SacI	GAGCTC	4 cut(s)	225, 420, 494, 1957
SacII	CCGCGG	1 cut(s)	200
SalI	GTCGAC	2 cut(s)	259, 2710
SapI	GCTCTTC	2 cut(s)	714, 1792
SaqAI	TTAA	6 cut(s)	35, 408, 731, 812, 1208, 1811
SchI	GAGTC	4 cut(s)	956, 1160, 1514, 3134
SduI	GDGCHC	6 cut(s)	178, 225, 420, 494, 1957, 2127
SfaNI	GCATC	8 cut(s)	433, 734, 909, 1581, 1932, 2230, 2622, 2854
SfcI	CTRYAG	4 cut(s)	18, 2290, 2442, 2455
Sfr303I	CCGCGG	1 cut(s)	200
SfuI	TTCGAA	1 cut(s)	296
SgrBI	CCGCGG	1 cut(s)	200
SinI	GGWCC	8 cut(s)	244, 557, 563, 569, 575, 1137, 2087, 3049
SmiMI	CAYNNNNRTG	2 cut(s)	719, 1583
SmlI	CTYRAG	3 cut(s)	835, 1897, 3028
SmoI	CTYRAG	3 cut(s)	835, 1897, 3028
SphI	GCATGC	1 cut(s)	1322
Sse9I	AATT	9 cut(s)	355, 634, 645, 1705, 1861, 2112, 2176, 2307, 2813
SseBI	AGGCCT	1 cut(s)	164
SspI	AATATT	3 cut(s)	904, 1549, 2492
SspMI	CTAG	9 cut(s)	923, 978, 1323, 1797, 2118, 2663, 2715, 2765, 2936
SstI	GAGCTC	4 cut(s)	225, 420, 494, 1957
StuI	AGGCCT	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	2398
TaaI	ACNGT	5 cut(s)	390, 2263, 2542, 2839, 2903
TaiI	ACGT	2 cut(s)	2711, 3003
TasI	AATT	9 cut(s)	355, 634, 645, 1705, 1861, 2112, 2176, 2307, 2813
TatI	WGTACW	2 cut(s)	1701, 2994
TauI	GCSGC	5 cut(s)	87, 199, 202, 314, 2978
TfiI	GAWTC	8 cut(s)	673, 818, 1124, 1454, 1670, 1819, 2393, 3039
Tru1I	TTAA	6 cut(s)	35, 408, 731, 812, 1208, 1811
Tru9I	TTAA	6 cut(s)	35, 408, 731, 812, 1208, 1811
TscAI	CASTG	9 cut(s)	957, 1250, 1255, 1311, 1882, 2433, 2760, 2824, 2844
TseFI	GTSAC	1 cut(s)	1756
TseI	GCWGC	7 cut(s)	268, 346, 1093, 2454, 2457, 2668, 2972
Tsp45I	GTSAC	1 cut(s)	1756
TspDTI	ATGAA	6 cut(s)	709, 1394, 1467, 1575, 1674, 2847
TspGWI	ACGGA	4 cut(s)	64, 639, 1056, 1194
TspRI	CASTG	9 cut(s)	957, 1250, 1255, 1311, 1882, 2433, 2760, 2824, 2844
Tth111I	GACNNNGTC	2 cut(s)	248, 3023
Van91I	CCANNNNNTGG	2 cut(s)	1169, 2802
VpaK11BI	GGWCC	8 cut(s)	244, 557, 563, 569, 575, 1137, 2087, 3049
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	3 cut(s)	1861, 2176, 2813
XbaI	TCTAGA	2 cut(s)	2662, 2764
XceI	RCATGY	3 cut(s)	718, 1322, 1843
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2915
XmiI	GTMKAC	4 cut(s)	260, 2328, 2711, 3018
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	9 cut(s)	923, 978, 1323, 1797, 2118, 2663, 2715, 2765, 2936
Zsp2I	ATGCAT	1 cut(s)	1574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.