AAA domain (Cdc48 subfamily)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G40130 AT2G40130 |
| fragaria_vesca | FvH4_7g24540 FvH4_7g24540 |
| malus_domestica | MD01G1153400.v1.1 MD07G1222400.v1.1 |
| prunus_persica | Prupe.2G250700_v2.0.a1 Prupe.2G250700_v2.0.a1 |
| pyrus_communis | pycom01g17100 pycom07g20100 pycom07g20110 |
| rosa_chinensis | RchiOBHm_Chr1g0370371 |
| rosa_laevigata | RLG00000027054 |
| rosa_multiflora | Rmu_co8224134.1_g000001 Rmu_co8315027.1_g000001 Rmu_sc0006707.1_g000030 Rmu_sc0029129.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00286640 |
| rosa_rugosa | Rorug01G0355800 Rorug01G0355900 |
| rosa_samantha | Rh1AG364200 Rh1BG327500 Rh1CG340500 Rh1DG357800 |
| rosa_wichuraiana | Rw1G032050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 5 cut(s) | 68, 281, 443, 446, 3035 |
| AatII | GACGTC | 1 cut(s) | 1879 |
| Acc36I | ACCTGC | 1 cut(s) | 1325 |
| AccB1I | GGYRCC | 3 cut(s) | 1207, 1248, 2548 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1193, 2877 |
| AccBSI | CCGCTC | 1 cut(s) | 540 |
| AccI | GTMKAC | 2 cut(s) | 2397, 2774 |
| AccIII | TCCGGA | 3 cut(s) | 477, 586, 1679 |
| AclWI | GGATC | 4 cut(s) | 832, 1988, 2247, 2796 |
| AcoI | YGGCCR | 2 cut(s) | 21, 300 |
| AcsI | RAATTY | 6 cut(s) | 862, 1594, 1827, 2245, 2453, 2888 |
| AcuI | CTGAAG | 4 cut(s) | 975, 1311, 1563, 2073 |
| AcyI | GRCGYC | 1 cut(s) | 1876 |
| AfaI | GTAC | 3 cut(s) | 2719, 3080, 3163 |
| AflIII | ACRYGT | 1 cut(s) | 942 |
| AgeI | ACCGGT | 1 cut(s) | 2447 |
| AjnI | CCWGG | 6 cut(s) | 23, 318, 543, 910, 2433, 2876 |
| Alw21I | GWGCWC | 3 cut(s) | 225, 411, 485 |
| AlwI | GGATC | 4 cut(s) | 832, 1988, 2247, 2796 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 418, 1123 |
| Ama87I | CYCGRG | 2 cut(s) | 592, 634 |
| Aor13HI | TCCGGA | 3 cut(s) | 477, 586, 1679 |
| ApeKI | GCWGC | 8 cut(s) | 337, 373, 376, 379, 1117, 2526, 3056, 3059 |
| ApoI | RAATTY | 6 cut(s) | 862, 1594, 1827, 2245, 2453, 2888 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1382, 1414, 2264, 2296 |
| AsiGI | ACCGGT | 1 cut(s) | 2447 |
| AsuC2I | CCSGG | 7 cut(s) | 443, 593, 594, 600, 606, 777, 790 |
| AsuHPI | GGTGA | 6 cut(s) | 512, 980, 988, 1010, 2884, 3207 |
| AsuNHI | GCTAGC | 2 cut(s) | 1052, 1349 |
| AvaI | CYCGRG | 2 cut(s) | 592, 634 |
| AvaII | GGWCC | 9 cut(s) | 244, 315, 589, 596, 602, 908, 1062, 1161, 2156 |
| BanI | GGYRCC | 3 cut(s) | 1207, 1248, 2548 |
| BanII | GRGCYC | 4 cut(s) | 225, 411, 485, 2026 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1765, 1797 |
| BbsI | GAAGAC | 7 cut(s) | 451, 963, 1033, 1415, 1551, 1896, 2479 |
| Bbv12I | GWGCWC | 3 cut(s) | 225, 411, 485 |
| BbvCI | CCTCAGC | 2 cut(s) | 872, 2199 |
| BbvI | GCAGC | 8 cut(s) | 349, 385, 388, 391, 1129, 2538, 3046, 3068 |
| BccI | CCATC | 6 cut(s) | 314, 758, 1165, 1366, 2249, 2254 |
| BceAI | ACGGC | 6 cut(s) | 36, 350, 367, 594, 1065, 2774 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2936, 2970 |
| BciT130I | CCWGG | 6 cut(s) | 25, 320, 545, 912, 2435, 2878 |
| BcnI | CCSGG | 7 cut(s) | 443, 593, 594, 600, 606, 777, 790 |
| BfmI | CTRYAG | 3 cut(s) | 1521, 2511, 2524 |
| BfoI | RGCGCY | 2 cut(s) | 218, 1047 |
| BfuAI | ACCTGC | 1 cut(s) | 1325 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 90 |
| Bme18I | GGWCC | 9 cut(s) | 244, 315, 589, 596, 602, 908, 1062, 1161, 2156 |
| BmeT110I | CYCGRG | 2 cut(s) | 592, 634 |
| BmrI | ACTGGG | 1 cut(s) | 1117 |
| BmsI | GCATC | 8 cut(s) | 559, 1356, 1611, 2001, 2299, 2691, 2938, 3201 |
| BmtI | GCTAGC | 2 cut(s) | 1056, 1353 |
| BmuI | ACTGGG | 1 cut(s) | 1117 |
| BoxI | GACNNNNGTC | 1 cut(s) | 594 |
| BpiI | GAAGAC | 7 cut(s) | 451, 963, 1033, 1415, 1551, 1896, 2479 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 56, 88, 2726, 2758 |
| BpmI | CTGGAG | 7 cut(s) | 188, 239, 353, 395, 2136, 2370, 2671 |
| Bpu10I | CCTNAGC | 3 cut(s) | 230, 872, 2199 |
| BpuEI | CTTGAG | 2 cut(s) | 1951, 2080 |
| BpuMI | CCSGG | 7 cut(s) | 443, 593, 594, 600, 606, 777, 790 |
| BsaHI | GRCGYC | 1 cut(s) | 1876 |
| BsaI | GGTCTC | 2 cut(s) | 76, 2831 |
| BsaWI | WCCGGW | 5 cut(s) | 477, 586, 1679, 2447, 3217 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 107, 137, 236, 266, 524, 554, 3194, 3224 |
| Bse118I | RCCGGY | 5 cut(s) | 10, 470, 615, 2447, 2926 |
| Bse1I | ACTGG | 4 cut(s) | 205, 1112, 2119, 2654 |
| Bse3DI | GCAATG | 4 cut(s) | 35, 841, 1279, 2502 |
| BseAI | TCCGGA | 3 cut(s) | 477, 586, 1679 |
| BseBI | CCWGG | 6 cut(s) | 25, 320, 545, 912, 2435, 2878 |
| BseMI | GCAATG | 4 cut(s) | 35, 841, 1279, 2502 |
| BseNI | ACTGG | 4 cut(s) | 205, 1112, 2119, 2654 |
| BsePI | GCGCGC | 5 cut(s) | 80, 168, 170, 172, 2619 |
| BseXI | GCAGC | 8 cut(s) | 349, 385, 388, 391, 1129, 2538, 3046, 3068 |
| BseYI | CCCAGC | 1 cut(s) | 261 |
| Bsh1285I | CGRYCG | 3 cut(s) | 447, 810, 1095 |
| BshNI | GGYRCC | 3 cut(s) | 1207, 1248, 2548 |
| BshTI | ACCGGT | 1 cut(s) | 2447 |
| BsiEI | CGRYCG | 3 cut(s) | 447, 810, 1095 |
| BsiHKAI | GWGCWC | 3 cut(s) | 225, 411, 485 |
| BsiHKCI | CYCGRG | 2 cut(s) | 592, 634 |
| BslFI | GGGAC | 5 cut(s) | 301, 921, 1075, 1124, 2416 |
| BsmBI | CGTCTC | 5 cut(s) | 241, 256, 289, 325, 645 |
| BsmFI | GGGAC | 5 cut(s) | 301, 921, 1075, 1124, 2416 |
| BsmI | GAATGC | 4 cut(s) | 2266, 2529, 2621, 2818 |
| Bso31I | GGTCTC | 2 cut(s) | 76, 2831 |
| BsoBI | CYCGRG | 2 cut(s) | 592, 634 |
| Bsp1286I | GDGCHC | 4 cut(s) | 225, 411, 485, 2026 |
| Bsp13I | TCCGGA | 3 cut(s) | 477, 586, 1679 |
| Bsp143I | GATC | 8 cut(s) | 807, 837, 1128, 1993, 2229, 2239, 2788, 2976 |
| Bsp19I | CCATGG | 1 cut(s) | 2467 |
| BspEI | TCCGGA | 3 cut(s) | 477, 586, 1679 |
| BspHI | TCATGA | 1 cut(s) | 1480 |
| BspMAI | CTGCAG | 1 cut(s) | 2528 |
| BspMI | ACCTGC | 1 cut(s) | 1325 |
| BspOI | GCTAGC | 2 cut(s) | 1056, 1353 |
| BspPI | GGATC | 4 cut(s) | 832, 1988, 2247, 2796 |
| BspQI | GCTCTTC | 1 cut(s) | 1840 |
| BspT107I | GGYRCC | 3 cut(s) | 1207, 1248, 2548 |
| BspTNI | GGTCTC | 2 cut(s) | 76, 2831 |
| BsrBI | CCGCTC | 1 cut(s) | 540 |
| BsrDI | GCAATG | 4 cut(s) | 35, 841, 1279, 2502 |
| BsrFI | RCCGGY | 5 cut(s) | 10, 470, 615, 2447, 2926 |
| BsrI | ACTGG | 4 cut(s) | 205, 1112, 2119, 2654 |
| BssAI | RCCGGY | 5 cut(s) | 10, 470, 615, 2447, 2926 |
| BssHII | GCGCGC | 5 cut(s) | 80, 168, 170, 172, 2619 |
| BssMI | GATC | 8 cut(s) | 807, 837, 1128, 1993, 2229, 2239, 2788, 2976 |
| BssNI | GRCGYC | 1 cut(s) | 1876 |
| BssT1I | CCWWGG | 2 cut(s) | 1157, 2467 |
| Bst2UI | CCWGG | 6 cut(s) | 25, 320, 545, 912, 2435, 2878 |
| Bst6I | CTCTTC | 3 cut(s) | 1840, 2802, 3134 |
| BstACI | GRCGYC | 1 cut(s) | 1876 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1123 |
| BstDSI | CCRYGG | 4 cut(s) | 18, 197, 1021, 2467 |
| BstEII | GGTNACC | 1 cut(s) | 976 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 158 |
| BstH2I | RGCGCY | 2 cut(s) | 218, 1047 |
| BstKTI | GATC | 8 cut(s) | 810, 840, 1131, 1996, 2232, 2242, 2791, 2979 |
| BstMBI | GATC | 8 cut(s) | 807, 837, 1128, 1993, 2229, 2239, 2788, 2976 |
| BstMCI | CGRYCG | 3 cut(s) | 447, 810, 1095 |
| BstNI | CCWGG | 6 cut(s) | 25, 320, 545, 912, 2435, 2878 |
| BstNSI | RCATGY | 2 cut(s) | 946, 1087 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 594 |
| BstPI | GGTNACC | 1 cut(s) | 976 |
| BstSFI | CTRYAG | 3 cut(s) | 1521, 2511, 2524 |
| BstV1I | GCAGC | 8 cut(s) | 349, 385, 388, 391, 1129, 2538, 3046, 3068 |
| BstV2I | GAAGAC | 7 cut(s) | 451, 963, 1033, 1415, 1551, 1896, 2479 |
| BstX2I | RGATCY | 2 cut(s) | 2239, 2788 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1171, 2902 |
| BstYI | RGATCY | 2 cut(s) | 2239, 2788 |
| BtgI | CCRYGG | 4 cut(s) | 18, 197, 1021, 2467 |
| BtsI | GCAGTG | 2 cut(s) | 905, 2823 |
| BtsIMutI | CAGTG | 5 cut(s) | 905, 1274, 1335, 2823, 2919 |
| BveI | ACCTGC | 1 cut(s) | 1325 |
| CaiI | CAGNNNCTG | 2 cut(s) | 418, 1123 |
| CciI | TCATGA | 1 cut(s) | 1480 |
| Cfr10I | RCCGGY | 5 cut(s) | 10, 470, 615, 2447, 2926 |
| Cfr42I | CCGCGG | 1 cut(s) | 200 |
| Cfr9I | CCCGGG | 1 cut(s) | 592 |
| CseI | GACGC | 3 cut(s) | 223, 238, 737 |
| Csp6I | GTAC | 3 cut(s) | 2718, 3079, 3162 |
| CspAI | ACCGGT | 1 cut(s) | 2447 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1506, 1541 |
| CviAII | CATG | 9 cut(s) | 298, 388, 943, 1084, 1481, 1599, 1883, 1982, 2468 |
| CviQI | GTAC | 3 cut(s) | 2718, 3079, 3162 |
| DpnI | GATC | 8 cut(s) | 809, 839, 1130, 1995, 2231, 2241, 2790, 2978 |
| DpnII | GATC | 8 cut(s) | 807, 837, 1128, 1993, 2229, 2239, 2788, 2976 |
| DrdI | GACNNNNNNGTC | 5 cut(s) | 68, 281, 443, 446, 3035 |
| DseDI | GACNNNNNNGTC | 5 cut(s) | 68, 281, 443, 446, 3035 |
| EaeI | YGGCCR | 2 cut(s) | 21, 300 |
| Eam1104I | CTCTTC | 3 cut(s) | 1840, 2802, 3134 |
| EarI | CTCTTC | 3 cut(s) | 1840, 2802, 3134 |
| EciI | GGCGGA | 3 cut(s) | 115, 139, 497 |
| Ecl136II | GAGCTC | 3 cut(s) | 223, 409, 483 |
| Eco130I | CCWWGG | 2 cut(s) | 1157, 2467 |
| Eco147I | AGGCCT | 1 cut(s) | 164 |
| Eco24I | GRGCYC | 4 cut(s) | 225, 411, 485, 2026 |
| Eco31I | GGTCTC | 2 cut(s) | 76, 2831 |
| Eco32I | GATATC | 1 cut(s) | 1626 |
| Eco47I | GGWCC | 9 cut(s) | 244, 315, 589, 596, 602, 908, 1062, 1161, 2156 |
| Eco53kI | GAGCTC | 3 cut(s) | 223, 409, 483 |
| Eco57I | CTGAAG | 4 cut(s) | 975, 1311, 1563, 2073 |
| Eco88I | CYCGRG | 2 cut(s) | 592, 634 |
| Eco91I | GGTNACC | 1 cut(s) | 976 |
| EcoICRI | GAGCTC | 3 cut(s) | 223, 409, 483 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 158 |
| EcoO109I | RGGNCCY | 2 cut(s) | 908, 1062 |
| EcoO65I | GGTNACC | 1 cut(s) | 976 |
| EcoRI | GAATTC | 3 cut(s) | 862, 2245, 2888 |
| EcoRII | CCWGG | 6 cut(s) | 23, 318, 543, 910, 2433, 2876 |
| EcoRV | GATATC | 1 cut(s) | 1626 |
| EcoT14I | CCWWGG | 2 cut(s) | 1157, 2467 |
| EcoT22I | ATGCAT | 1 cut(s) | 1604 |
| EcoT38I | GRGCYC | 4 cut(s) | 225, 411, 485, 2026 |
| ErhI | CCWWGG | 2 cut(s) | 1157, 2467 |
| Esp3I | CGTCTC | 5 cut(s) | 241, 256, 289, 325, 645 |
| FaeI | CATG | 9 cut(s) | 301, 391, 946, 1087, 1484, 1602, 1886, 1985, 2471 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1301, 1333, 1841, 1873 |
| FaqI | GGGAC | 5 cut(s) | 301, 921, 1075, 1124, 2416 |
| FatI | CATG | 9 cut(s) | 297, 387, 942, 1083, 1480, 1598, 1882, 1981, 2467 |
| FauI | CCCGC | 5 cut(s) | 185, 285, 545, 1265, 1503 |
| FblI | GTMKAC | 2 cut(s) | 2397, 2774 |
| FriOI | GRGCYC | 4 cut(s) | 225, 411, 485, 2026 |
| GsaI | CCCAGC | 1 cut(s) | 265 |
| GsuI | CTGGAG | 7 cut(s) | 188, 239, 353, 395, 2136, 2370, 2671 |
| HaeII | RGCGCY | 2 cut(s) | 218, 1047 |
| HgaI | GACGC | 3 cut(s) | 223, 238, 737 |
| Hin1I | GRCGYC | 1 cut(s) | 1876 |
| Hin1II | CATG | 9 cut(s) | 301, 391, 946, 1087, 1484, 1602, 1886, 1985, 2471 |
| HincII | GTYRAC | 4 cut(s) | 756, 999, 1880, 2775 |
| HindII | GTYRAC | 4 cut(s) | 756, 999, 1880, 2775 |
| HindIII | AAGCTT | 3 cut(s) | 1073, 1223, 2996 |
| HpaI | GTTAAC | 1 cut(s) | 756 |
| HphI | GGTGA | 6 cut(s) | 512, 980, 988, 1010, 2884, 3207 |
| Hpy166II | GTNNAC | 8 cut(s) | 756, 831, 999, 1880, 2105, 2398, 2756, 2775 |
| Hpy8I | GTNNAC | 8 cut(s) | 756, 831, 999, 1880, 2105, 2398, 2756, 2775 |
| Hpy99I | CGWCG | 9 cut(s) | 65, 80, 275, 440, 615, 731, 749, 1100, 2776 |
| HpyCH4IV | ACGT | 2 cut(s) | 1876, 2771 |
| HpySE526I | ACGT | 2 cut(s) | 1876, 2771 |
| Hsp92I | GRCGYC | 1 cut(s) | 1876 |
| Hsp92II | CATG | 9 cut(s) | 301, 391, 946, 1087, 1484, 1602, 1886, 1985, 2471 |
| Kpn2I | TCCGGA | 3 cut(s) | 477, 586, 1679 |
| KroI | GCCGGC | 1 cut(s) | 615 |
| KroNI | GCCGGC | 1 cut(s) | 617 |
| KspAI | GTTAAC | 1 cut(s) | 756 |
| KspI | CCGCGG | 1 cut(s) | 200 |
| Kzo9I | GATC | 8 cut(s) | 807, 837, 1128, 1993, 2229, 2239, 2788, 2976 |
| LguI | GCTCTTC | 1 cut(s) | 1840 |
| Lsp1109I | GCAGC | 8 cut(s) | 349, 385, 388, 391, 1129, 2538, 3046, 3068 |
| LweI | GCATC | 8 cut(s) | 559, 1356, 1611, 2001, 2299, 2691, 2938, 3201 |
| MaeII | ACGT | 2 cut(s) | 1876, 2771 |
| MaeIII | GTNAC | 4 cut(s) | 968, 976, 1444, 1804 |
| MalI | GATC | 8 cut(s) | 809, 839, 1130, 1995, 2231, 2241, 2790, 2978 |
| MauBI | CGCGCGCG | 1 cut(s) | 170 |
| MbiI | CCGCTC | 1 cut(s) | 540 |
| MboI | GATC | 8 cut(s) | 807, 837, 1128, 1993, 2229, 2239, 2788, 2976 |
| MfeI | CAATTG | 1 cut(s) | 2225 |
| MflI | RGATCY | 2 cut(s) | 2239, 2788 |
| MhlI | GDGCHC | 4 cut(s) | 225, 411, 485, 2026 |
| MlyI | GAGTC | 6 cut(s) | 953, 965, 1023, 1184, 1544, 3218 |
| MmeI | TCCRAC | 7 cut(s) | 644, 1115, 1380, 1541, 1811, 2134, 2580 |
| Mph1103I | ATGCAT | 1 cut(s) | 1604 |
| MroI | TCCGGA | 3 cut(s) | 477, 586, 1679 |
| MroNI | GCCGGC | 1 cut(s) | 615 |
| MseI | TTAA | 7 cut(s) | 35, 399, 755, 1232, 1731, 1859, 3177 |
| MspA1I | CMGCKG | 2 cut(s) | 199, 3059 |
| MunI | CAATTG | 1 cut(s) | 2225 |
| Mva1269I | GAATGC | 4 cut(s) | 2266, 2529, 2621, 2818 |
| MvaI | CCWGG | 6 cut(s) | 25, 320, 545, 912, 2435, 2878 |
| NaeI | GCCGGC | 1 cut(s) | 617 |
| NciI | CCSGG | 7 cut(s) | 443, 593, 594, 600, 606, 777, 790 |
| NcoI | CCATGG | 1 cut(s) | 2467 |
| NdeII | GATC | 8 cut(s) | 807, 837, 1128, 1993, 2229, 2239, 2788, 2976 |
| NgoMIV | GCCGGC | 1 cut(s) | 615 |
| NheI | GCTAGC | 2 cut(s) | 1052, 1349 |
| NlaIII | CATG | 9 cut(s) | 301, 391, 946, 1087, 1484, 1602, 1886, 1985, 2471 |
| NmuCI | GTSAC | 3 cut(s) | 968, 976, 1804 |
| NsiI | ATGCAT | 1 cut(s) | 1604 |
| NspI | RCATGY | 2 cut(s) | 946, 1087 |
| PagI | TCATGA | 1 cut(s) | 1480 |
| PasI | CCCWGGG | 1 cut(s) | 544 |
| PauI | GCGCGC | 5 cut(s) | 80, 168, 170, 172, 2619 |
| PceI | AGGCCT | 1 cut(s) | 164 |
| PciI | ACATGT | 1 cut(s) | 942 |
| PciSI | GCTCTTC | 1 cut(s) | 1840 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 60, 279, 444, 2083 |
| PctI | GAATGC | 4 cut(s) | 2266, 2529, 2621, 2818 |
| PdiI | GCCGGC | 1 cut(s) | 617 |
| PfeI | GAWTC | 7 cut(s) | 421, 1148, 1484, 1718, 2462, 2574, 2933 |
| PflFI | GACNNNGTC | 2 cut(s) | 248, 443 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1193, 2877 |
| PinAI | ACCGGT | 1 cut(s) | 2447 |
| Ple19I | CGATCG | 1 cut(s) | 810 |
| PleI | GAGTC | 6 cut(s) | 953, 965, 1023, 1183, 1543, 3217 |
| PpsI | GAGTC | 6 cut(s) | 953, 965, 1023, 1183, 1543, 3217 |
| PpuMI | RGGWCCY | 2 cut(s) | 908, 1062 |
| PscI | ACATGT | 1 cut(s) | 942 |
| PshAI | GACNNNNGTC | 1 cut(s) | 594 |
| Psp124BI | GAGCTC | 3 cut(s) | 225, 411, 485 |
| Psp5II | RGGWCCY | 2 cut(s) | 908, 1062 |
| Psp6I | CCWGG | 6 cut(s) | 23, 318, 543, 910, 2433, 2876 |
| PspEI | GGTNACC | 1 cut(s) | 976 |
| PspFI | CCCAGC | 1 cut(s) | 261 |
| PspGI | CCWGG | 6 cut(s) | 23, 318, 543, 910, 2433, 2876 |
| PspPPI | RGGWCCY | 2 cut(s) | 908, 1062 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1287, 1319 |
| PstI | CTGCAG | 1 cut(s) | 2528 |
| PstNI | CAGNNNCTG | 2 cut(s) | 418, 1123 |
| PsuI | RGATCY | 2 cut(s) | 2239, 2788 |
| PsyI | GACNNNGTC | 2 cut(s) | 248, 443 |
| PteI | GCGCGC | 5 cut(s) | 80, 168, 170, 172, 2619 |
| PvuI | CGATCG | 1 cut(s) | 810 |
| PvuII | CAGCTG | 1 cut(s) | 3059 |
| RsaI | GTAC | 3 cut(s) | 2719, 3080, 3163 |
| RsaNI | GTAC | 3 cut(s) | 2718, 3079, 3162 |
| SacI | GAGCTC | 3 cut(s) | 225, 411, 485 |
| SacII | CCGCGG | 1 cut(s) | 200 |
| SalI | GTCGAC | 1 cut(s) | 2773 |
| SapI | GCTCTTC | 1 cut(s) | 1840 |
| SaqAI | TTAA | 7 cut(s) | 35, 399, 755, 1232, 1731, 1859, 3177 |
| Sau3AI | GATC | 8 cut(s) | 807, 837, 1128, 1993, 2229, 2239, 2788, 2976 |
| SchI | GAGTC | 6 cut(s) | 953, 965, 1023, 1184, 1544, 3218 |
| SduI | GDGCHC | 4 cut(s) | 225, 411, 485, 2026 |
| SfaNI | GCATC | 8 cut(s) | 559, 1356, 1611, 2001, 2299, 2691, 2938, 3201 |
| SfcI | CTRYAG | 3 cut(s) | 1521, 2511, 2524 |
| Sfr303I | CCGCGG | 1 cut(s) | 200 |
| SgrBI | CCGCGG | 1 cut(s) | 200 |
| SinI | GGWCC | 9 cut(s) | 244, 315, 589, 596, 602, 908, 1062, 1161, 2156 |
| SmaI | CCCGGG | 1 cut(s) | 594 |
| SmlI | CTYRAG | 2 cut(s) | 1966, 2095 |
| SmoI | CTYRAG | 2 cut(s) | 1966, 2095 |
| SseBI | AGGCCT | 1 cut(s) | 164 |
| SspI | AATATT | 2 cut(s) | 928, 1579 |
| SstI | GAGCTC | 3 cut(s) | 225, 411, 485 |
| StuI | AGGCCT | 1 cut(s) | 164 |
| StyI | CCWWGG | 2 cut(s) | 1157, 2467 |
| TaiI | ACGT | 2 cut(s) | 1879, 2774 |
| TauI | GCSGC | 5 cut(s) | 50, 188, 199, 202, 305 |
| TfiI | GAWTC | 7 cut(s) | 421, 1148, 1484, 1718, 2462, 2574, 2933 |
| Tru1I | TTAA | 7 cut(s) | 35, 399, 755, 1232, 1731, 1859, 3177 |
| Tru9I | TTAA | 7 cut(s) | 35, 399, 755, 1232, 1731, 1859, 3177 |
| TscAI | CASTG | 5 cut(s) | 905, 1274, 1335, 2823, 2919 |
| TseFI | GTSAC | 3 cut(s) | 968, 976, 1804 |
| TseI | GCWGC | 8 cut(s) | 337, 373, 376, 379, 1117, 2526, 3056, 3059 |
| Tsp45I | GTSAC | 3 cut(s) | 968, 976, 1804 |
| TspDTI | ATGAA | 9 cut(s) | 1290, 1421, 1497, 1587, 1605, 1722, 1884, 2739, 2922 |
| TspGWI | ACGGA | 3 cut(s) | 64, 663, 2365 |
| TspMI | CCCGGG | 1 cut(s) | 592 |
| TspRI | CASTG | 5 cut(s) | 905, 1274, 1335, 2823, 2919 |
| Tth111I | GACNNNGTC | 2 cut(s) | 248, 443 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1193, 2877 |
| VpaK11BI | GGWCC | 9 cut(s) | 244, 315, 589, 596, 602, 908, 1062, 1161, 2156 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 158 |
| XapI | RAATTY | 6 cut(s) | 862, 1594, 1827, 2245, 2453, 2888 |
| XbaI | TCTAGA | 1 cut(s) | 2731 |
| XceI | RCATGY | 2 cut(s) | 946, 1087 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2999 |
| XmaI | CCCGGG | 1 cut(s) | 592 |
| XmiI | GTMKAC | 2 cut(s) | 2397, 2774 |
| ZraI | GACGTC | 1 cut(s) | 1877 |
| Zsp2I | ATGCAT | 1 cut(s) | 1604 |