Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007059

Physical Location & Seq

Genomic Coordinates Reverse (-)

47221307 .. 47221810

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0355800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAGCCACTACACCTTTGTGGTATATCGTATGGCCATTGCAACTGCCTTGGCATGGTACCTAGAGAGACATTCTAGGCCTAAAATGACTATCAAGGTCATGGCAAAGATCATGCTGCCAAGCATGTTTGACCCTGTAATGAACCAAAACCTATACTACGTGGGCATGGAGAACTTCAATGCCACATTCACATCGGCCATGTGCCACATGCTTCCGGTGTTTGCATTTGTCACTACTCCGCCTTGGGTTCTTACTCGGTTCATACATTTCGACCAGTACGTCAAGTCGACCACCACATGTCGGGTAATCAATGAAGTCGACGGTGAAATCATCAGAATCCGATTTGGAAGTCAAGTTCCCGGCGGTGGGCATTTGGGGTCTGCAGGTTTGAGCGCTGAGTTCCTCAGTTGTCATATCGGCCAAGTTGTTAAGTCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0010033 GO:0014070 GO:0033993 GO:0042221 GO:0050896 GO:1901700 GO:1902347

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_2 Clp_N

Protein Analysis

146

Amino Acids

16.52

Weight (kDa)

9.12

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40130 AT2G40130
fragaria_vesca	FvH4_7g24540 FvH4_7g24540
malus_domestica	MD01G1153400.v1.1 MD07G1222400.v1.1
prunus_persica	Prupe.2G250700_v2.0.a1 Prupe.2G250700_v2.0.a1
pyrus_communis	pycom01g17100 pycom07g20100 pycom07g20110
rosa_chinensis	RchiOBHm_Chr1g0370371
rosa_laevigata	RLG00000027054
rosa_multiflora	Rmu_co8224134.1_g000001 Rmu_co8315027.1_g000001 Rmu_sc0006707.1_g000030 Rmu_sc0029129.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286640
rosa_rugosa	Rorug01G0355800 Rorug01G0355900
rosa_samantha	Rh1AG364200 Rh1BG327500 Rh1CG340500 Rh1DG357800
rosa_wichuraiana	Rw1G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
Acc36I	ACCTGC	1 cut(s)	374
Acc65I	GGTACC	1 cut(s)	57
AccB1I	GGYRCC	1 cut(s)	57
AccI	GTMKAC	2 cut(s)	287, 318
AciI	CCGC	2 cut(s)	239, 363
AcoI	YGGCCR	3 cut(s)	33, 195, 418
AfaI	GTAC	2 cut(s)	59, 278
AfeI	AGCGCT	1 cut(s)	394
AfiI	CCNNNNNNNGG	4 cut(s)	54, 300, 365, 366
AflIII	ACRYGT	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	178
AleI	CACNNNNGTG	1 cut(s)	17
AloI	GAACNNNNNNTCC	2 cut(s)	339, 371
Alw26I	GTCTC	1 cut(s)	61
Aor51HI	AGCGCT	1 cut(s)	394
AoxI	GGCC	4 cut(s)	33, 77, 195, 418
ApeKI	GCWGC	1 cut(s)	115
Asp718I	GGTACC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	395
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	2 cut(s)	62, 75
BfmI	CTRYAG	1 cut(s)	381
BfoI	RGCGCY	1 cut(s)	396
BfuAI	ACCTGC	1 cut(s)	374
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	360
BsaAI	YACGTR	1 cut(s)	160
BsaJI	CCNNGG	2 cut(s)	48, 242
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 300, 365, 366
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	48, 242
BseLI	CCNNNNNNNGG	4 cut(s)	54, 300, 365, 366
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	387, 418
BseNI	ACTGG	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	102
BshFI	GGCC	4 cut(s)	35, 79, 197, 420
BshNI	GGYRCC	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	215, 360
BslI	CCNNNNNNNGG	4 cut(s)	54, 300, 365, 366
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	4 cut(s)	35, 79, 197, 420
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	2 cut(s)	239, 363
BspANI	GGCC	4 cut(s)	35, 79, 197, 420
BspCNI	CTCAG	2 cut(s)	388, 417
BspLI	GGNNCC	1 cut(s)	59
BspMAI	CTGCAG	1 cut(s)	385
BspMI	ACCTGC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	48, 242
BssMI	GATC	1 cut(s)	108
BssT1I	CCWWGG	2 cut(s)	48, 242
Bst4CI	ACNGT	1 cut(s)	323
BstBAI	YACGTR	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	396, 404
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	108
BstNSI	RCATGY	3 cut(s)	127, 211, 300
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	102
BsuRI	GGCC	4 cut(s)	35, 79, 197, 420
BveI	ACCTGC	1 cut(s)	374
CfoI	GCGC	1 cut(s)	395
Csp6I	GTAC	2 cut(s)	58, 277
CviAII	CATG	8 cut(s)	54, 100, 112, 124, 166, 199, 208, 297
CviJI	RGCY	5 cut(s)	6, 35, 79, 197, 420
CviKI_1	RGCY	5 cut(s)	6, 35, 79, 197, 420
CviQI	GTAC	2 cut(s)	58, 277
DdeI	CTNAG	2 cut(s)	396, 404
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
EaeI	YGGCCR	3 cut(s)	33, 195, 418
EciI	GGCGGA	1 cut(s)	228
Eco130I	CCWWGG	2 cut(s)	48, 242
Eco147I	AGGCCT	1 cut(s)	79
Eco47III	AGCGCT	1 cut(s)	394
EcoT14I	CCWWGG	2 cut(s)	48, 242
ErhI	CCWWGG	2 cut(s)	48, 242
FaeI	CATG	8 cut(s)	57, 103, 115, 127, 169, 202, 211, 300
FatI	CATG	8 cut(s)	53, 99, 111, 123, 165, 198, 207, 296
FblI	GTMKAC	2 cut(s)	287, 318
Fnu4HI	GCNGC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	2 cut(s)	62, 75
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	396
HaeIII	GGCC	4 cut(s)	35, 79, 197, 420
HapII	CCGG	2 cut(s)	215, 360
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	8 cut(s)	57, 103, 115, 127, 169, 202, 211, 300
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HincII	GTYRAC	2 cut(s)	288, 319
HindII	GTYRAC	2 cut(s)	288, 319
HinfI	GANTC	1 cut(s)	336
HpaII	CCGG	2 cut(s)	215, 360
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	2 cut(s)	288, 319
Hpy188I	TCNGA	2 cut(s)	335, 341
Hpy8I	GTNNAC	2 cut(s)	288, 319
Hpy99I	CGWCG	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	2 cut(s)	159, 279
HpyCH4V	TGCA	3 cut(s)	41, 224, 383
HpyF3I	CTNAG	2 cut(s)	396, 404
HpySE526I	ACGT	2 cut(s)	159, 279
Hsp92II	CATG	8 cut(s)	57, 103, 115, 127, 169, 202, 211, 300
HspAI	GCGC	1 cut(s)	393
KpnI	GGTACC	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	5 cut(s)	147, 228, 287, 369, 373
Lsp1109I	GCAGC	1 cut(s)	102
MaeI	CTAG	2 cut(s)	62, 75
MaeII	ACGT	2 cut(s)	159, 279
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MlsI	TGGCCA	1 cut(s)	35
MluNI	TGGCCA	1 cut(s)	35
MnlI	CCTC	1 cut(s)	413
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	35
MspI	CCGG	2 cut(s)	215, 360
MspR9I	CCNGG	1 cut(s)	360
NciI	CCSGG	1 cut(s)	360
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	8 cut(s)	57, 103, 115, 127, 169, 202, 211, 300
NlaIV	GGNNCC	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	3 cut(s)	127, 211, 300
OliI	CACNNNNGTG	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	79
PciI	ACATGT	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	336
PkrI	GCNGC	1 cut(s)	117
Ppu21I	YACGTR	1 cut(s)	160
PscI	ACATGT	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	59
PstI	CTGCAG	1 cut(s)	385
RsaI	GTAC	2 cut(s)	59, 278
RsaNI	GTAC	2 cut(s)	58, 277
RseI	CAYNNNNRTG	1 cut(s)	17
SalI	GTCGAC	2 cut(s)	286, 317
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	360
SetI	ASST	7 cut(s)	17, 63, 99, 153, 162, 282, 388
SfcI	CTRYAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	17
SseBI	AGGCCT	1 cut(s)	79
SsiI	CCGC	2 cut(s)	239, 363
SspMI	CTAG	2 cut(s)	62, 75
StuI	AGGCCT	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	2 cut(s)	48, 242
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	2 cut(s)	162, 282
TaqI	TCGA	3 cut(s)	270, 287, 318
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	3 cut(s)	155, 250, 327
XceI	RCATGY	3 cut(s)	127, 211, 300
XmiI	GTMKAC	2 cut(s)	287, 318
XspI	CTAG	2 cut(s)	62, 75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.