Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029129.1

Orthogroup ID

OG0007059

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1566

Gene Structure 1566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029129.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 995 bp

atggagtcatttgttccatttggtgggttcttttcggcaccttctgacccaaagcttccattaagctgttcaaatcggtgccttccccgcaatcatcagtgcaatgaaaattatgagcaagaagtatatgctgttccaaagggaggcttttctgcttcagtggcaggtcagcaccaagctagcttgccttcgtggatgcagatggctccacttggcccaaacaaggggtcggatatgaagaccaaagacaatggagtgctatcgagttccaaagttacaggactgcaaaggaaaggggatgataatactcatgaatctcgccccccgcctttagcaaacttgtttccaactatagtgggctttgagtctgctgaagacaagaagcacaatcacagcaacaagaccaatatttcttcaaatgaaaattcatgcatccctgtagatgtgcaagagatatccacatctcagtccagcgttcctccgaaggctaagagtgaaagtttctcctccggagtatgggaaaaacctacaaaagatgaagatattgaatcgggtagtgttaagtcctcttacagtttgtccaattcaagcattgttgagggtagccgaacttctccaacatcttccacttctgtgacaacagatttaggattaggaatttgctcttctcctgctagtaagttgaacttaaatctggatgaaggacgtcaacatgacatatcaggtttctcgtcttctgatgtagatttattcaatggcaattcctctatttatactgctcagtcatcattctgctcaagtcctgacaaacatgggcagtttgatccaagtgatgtcaagatgcttttcagagccctctttgagagagtgggctggcaaactgaagctataagtgctattagccaacgaatagctcattgccactcaagaagtgagcatcggactggagctaggcacagaaggggactgtggttcaactttgttggaccagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0010033 GO:0014070 GO:0033993 GO:0042221 GO:0050896 GO:1901700 GO:1902347

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_2 Clp_N

Protein Analysis

331

Amino Acids

35.88

Weight (kDa)

6.26

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40130 AT2G40130
fragaria_vesca	FvH4_7g24540 FvH4_7g24540
malus_domestica	MD01G1153400.v1.1 MD07G1222400.v1.1
prunus_persica	Prupe.2G250700_v2.0.a1 Prupe.2G250700_v2.0.a1
pyrus_communis	pycom01g17100 pycom07g20100 pycom07g20110
rosa_chinensis	RchiOBHm_Chr1g0370371
rosa_laevigata	RLG00000027054
rosa_multiflora	Rmu_co8224134.1_g000001 Rmu_co8315027.1_g000001 Rmu_sc0006707.1_g000030 Rmu_sc0029129.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286640
rosa_rugosa	Rorug01G0355800 Rorug01G0355900
rosa_samantha	Rh1AG364200 Rh1BG327500 Rh1CG340500 Rh1DG357800
rosa_wichuraiana	Rw1G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	709
Acc36I	ACCTGC	1 cut(s)	155
AccB1I	GGYRCC	2 cut(s)	37, 78
AccB7I	CCANNNNNTGG	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	509
AciI	CCGC	2 cut(s)	88, 326
AclWI	GGATC	1 cut(s)	818
AcsI	RAATTY	2 cut(s)	424, 657
AcuI	CTGAAG	3 cut(s)	141, 393, 903
AcyI	GRCGYC	1 cut(s)	706
AfiI	CCNNNNNNNGG	5 cut(s)	23, 143, 223, 224, 516
AgsI	TTSAA	7 cut(s)	72, 417, 548, 588, 685, 754, 976
AleI	CACNNNNGTG	1 cut(s)	632
AluBI	AGCT	7 cut(s)	55, 66, 179, 183, 887, 914, 950
AluI	AGCT	7 cut(s)	55, 66, 179, 183, 887, 914, 950
AlwI	GGATC	1 cut(s)	818
Aor13HI	TCCGGA	1 cut(s)	509
AoxI	GGCC	1 cut(s)	214
ApoI	RAATTY	2 cut(s)	424, 657
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AspS9I	GGNCC	2 cut(s)	215, 986
AsuNHI	GCTAGC	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	986
BanI	GGYRCC	2 cut(s)	37, 78
BanII	GRGCYC	1 cut(s)	856
BarI	GAAGNNNNNNTAC	2 cut(s)	595, 627
BbsI	GAAGAC	3 cut(s)	245, 381, 726
BccI	CCATC	1 cut(s)	196
BfaI	CTAG	3 cut(s)	180, 675, 951
BfmI	CTRYAG	2 cut(s)	351, 438
BfuAI	ACCTGC	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	986
BmgT120I	GGNCC	2 cut(s)	215, 986
BmiI	GGNNCC	3 cut(s)	39, 80, 207
BmsI	GCATC	4 cut(s)	186, 441, 831, 946
BmtI	GCTAGC	1 cut(s)	183
BpiI	GAAGAC	3 cut(s)	245, 381, 726
BpmI	CTGGAG	1 cut(s)	966
BpuEI	CTTGAG	2 cut(s)	781, 910
BsaHI	GRCGYC	1 cut(s)	706
BsaWI	WCCGGW	1 cut(s)	509
Bsc4I	CCNNNNNNNGG	5 cut(s)	23, 143, 223, 224, 516
Bse1I	ACTGG	1 cut(s)	949
Bse3DI	GCAATG	2 cut(s)	109, 916
BseAI	TCCGGA	1 cut(s)	509
BseGI	GGATG	4 cut(s)	201, 304, 432, 703
BseLI	CCNNNNNNNGG	5 cut(s)	23, 143, 223, 224, 516
BseMI	GCAATG	2 cut(s)	109, 916
BseMII	CTCAG	2 cut(s)	479, 794
BseNI	ACTGG	1 cut(s)	949
BseRI	GAGGAG	1 cut(s)	496
BshFI	GGCC	1 cut(s)	216
BshNI	GGYRCC	2 cut(s)	37, 78
BsiSI	CCGG	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	978
BslI	CCNNNNNNNGG	5 cut(s)	23, 143, 223, 224, 516
BsmFI	GGGAC	1 cut(s)	978
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	856
Bsp13I	TCCGGA	1 cut(s)	509
Bsp143I	GATC	1 cut(s)	823
BspACI	CCGC	2 cut(s)	88, 326
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	2 cut(s)	478, 793
BspEI	TCCGGA	1 cut(s)	509
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	3 cut(s)	39, 80, 207
BspMI	ACCTGC	1 cut(s)	155
BspOI	GCTAGC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	818
BspQI	GCTCTTC	1 cut(s)	670
BspT107I	GGYRCC	2 cut(s)	37, 78
BsrDI	GCAATG	2 cut(s)	109, 916
BsrI	ACTGG	1 cut(s)	949
BssMI	GATC	1 cut(s)	823
BssNI	GRCGYC	1 cut(s)	706
Bst4CI	ACNGT	2 cut(s)	575, 969
Bst6I	CTCTTC	1 cut(s)	670
BstACI	GRCGYC	1 cut(s)	706
BstC8I	GCNNGC	3 cut(s)	181, 185, 875
BstDEI	CTNAG	3 cut(s)	465, 489, 780
BstF5I	GGATG	4 cut(s)	201, 304, 432, 703
BstKTI	GATC	1 cut(s)	826
BstMBI	GATC	1 cut(s)	823
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 161, 893
BstSFI	CTRYAG	2 cut(s)	351, 438
BstV2I	GAAGAC	3 cut(s)	245, 381, 726
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	4 cut(s)	201, 304, 432, 703
BtsIMutI	CAGTG	2 cut(s)	104, 165
BveI	ACCTGC	1 cut(s)	155
Cac8I	GCNNGC	3 cut(s)	181, 185, 875
CciI	TCATGA	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	215, 986
CspCI	CAANNNNNGTGG	2 cut(s)	336, 371
CviAII	CATG	4 cut(s)	311, 429, 713, 812
DdeI	CTNAG	3 cut(s)	465, 489, 780
DpnI	GATC	1 cut(s)	825
DpnII	GATC	1 cut(s)	823
Eam1104I	CTCTTC	1 cut(s)	670
EarI	CTCTTC	1 cut(s)	670
Eco24I	GRGCYC	1 cut(s)	856
Eco32I	GATATC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	986
Eco57I	CTGAAG	3 cut(s)	141, 393, 903
EcoRV	GATATC	1 cut(s)	456
EcoT22I	ATGCAT	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	856
FaeI	CATG	4 cut(s)	314, 432, 716, 815
FalI	AAGNNNNNCTT	4 cut(s)	131, 163, 671, 703
FaqI	GGGAC	1 cut(s)	978
FatI	CATG	4 cut(s)	310, 428, 712, 811
FauI	CCCGC	2 cut(s)	95, 333
FokI	GGATG	4 cut(s)	208, 311, 419, 710
FriOI	GRGCYC	1 cut(s)	856
FspBI	CTAG	3 cut(s)	180, 675, 951
GsuI	CTGGAG	1 cut(s)	966
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	1 cut(s)	510
Hin1I	GRCGYC	1 cut(s)	706
Hin1II	CATG	4 cut(s)	314, 432, 716, 815
HincII	GTYRAC	1 cut(s)	710
HindII	GTYRAC	1 cut(s)	710
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	4 cut(s)	5, 314, 365, 548
HpaII	CCGG	1 cut(s)	510
Hpy166II	GTNNAC	1 cut(s)	710
Hpy188I	TCNGA	6 cut(s)	46, 232, 483, 739, 851, 942
Hpy188III	TCNNGA	6 cut(s)	311, 510, 695, 803, 838, 927
Hpy8I	GTNNAC	1 cut(s)	710
HpyAV	CCTTC	6 cut(s)	51, 92, 198, 478, 695, 954
HpyCH4III	ACNGT	2 cut(s)	575, 969
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	5 cut(s)	102, 199, 286, 432, 448
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 161, 893
HpyF3I	CTNAG	3 cut(s)	465, 489, 780
HpySE526I	ACGT	1 cut(s)	706
Hsp92I	GRCGYC	1 cut(s)	706
Hsp92II	CATG	4 cut(s)	314, 432, 716, 815
Kpn2I	TCCGGA	1 cut(s)	509
Kzo9I	GATC	1 cut(s)	823
LguI	GCTCTTC	1 cut(s)	670
LmnI	GCTCC	2 cut(s)	211, 947
LweI	GCATC	4 cut(s)	186, 441, 831, 946
MaeI	CTAG	3 cut(s)	180, 675, 951
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	2 cut(s)	274, 634
MalI	GATC	1 cut(s)	825
MboI	GATC	1 cut(s)	823
MboII	GAAGA	7 cut(s)	250, 386, 405, 551, 615, 657, 726
MhlI	GDGCHC	1 cut(s)	856
MluCI	AATT	5 cut(s)	109, 424, 583, 657, 760
MlyI	GAGTC	2 cut(s)	14, 374
MmeI	TCCRAC	4 cut(s)	210, 371, 641, 964
MnlI	CCTC	7 cut(s)	137, 489, 517, 577, 592, 775, 866
Mph1103I	ATGCAT	1 cut(s)	434
MroI	TCCGGA	1 cut(s)	509
MseI	TTAA	3 cut(s)	62, 561, 689
MslI	CAYNNNNRTG	1 cut(s)	632
MspI	CCGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	3 cut(s)	87, 161, 893
NdeII	GATC	1 cut(s)	823
NheI	GCTAGC	1 cut(s)	179
NlaIII	CATG	4 cut(s)	314, 432, 716, 815
NlaIV	GGNNCC	3 cut(s)	39, 80, 207
NmuCI	GTSAC	1 cut(s)	634
NsiI	ATGCAT	1 cut(s)	434
OliI	CACNNNNGTG	1 cut(s)	632
PagI	TCATGA	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	670
PfeI	GAWTC	2 cut(s)	314, 548
PflMI	CCANNNNNTGG	1 cut(s)	23
PleI	GAGTC	2 cut(s)	13, 373
PpsI	GAGTC	2 cut(s)	13, 373
PspN4I	GGNNCC	3 cut(s)	39, 80, 207
PspPI	GGNCC	2 cut(s)	215, 986
PsrI	GAACNNNNNNTAC	2 cut(s)	117, 149
RseI	CAYNNNNRTG	1 cut(s)	632
SapI	GCTCTTC	1 cut(s)	670
SaqAI	TTAA	3 cut(s)	62, 561, 689
Sau3AI	GATC	1 cut(s)	823
Sau96I	GGNCC	2 cut(s)	215, 986
SchI	GAGTC	2 cut(s)	14, 374
SduI	GDGCHC	1 cut(s)	856
SfaNI	GCATC	4 cut(s)	186, 441, 831, 946
SfcI	CTRYAG	2 cut(s)	351, 438
SinI	GGWCC	1 cut(s)	986
SmiMI	CAYNNNNRTG	1 cut(s)	632
SmlI	CTYRAG	2 cut(s)	796, 925
SmoI	CTYRAG	2 cut(s)	796, 925
Sse9I	AATT	5 cut(s)	109, 424, 583, 657, 760
SsiI	CCGC	2 cut(s)	88, 326
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	3 cut(s)	180, 675, 951
TaaI	ACNGT	2 cut(s)	575, 969
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	1 cut(s)	263
TasI	AATT	5 cut(s)	109, 424, 583, 657, 760
TfiI	GAWTC	2 cut(s)	314, 548
Tru1I	TTAA	3 cut(s)	62, 561, 689
Tru9I	TTAA	3 cut(s)	62, 561, 689
TscAI	CASTG	2 cut(s)	104, 165
TseFI	GTSAC	1 cut(s)	634
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	7 cut(s)	120, 251, 327, 417, 435, 552, 714
TspRI	CASTG	2 cut(s)	104, 165
Van91I	CCANNNNNTGG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	986
XapI	RAATTY	2 cut(s)	424, 657
XspI	CTAG	3 cut(s)	180, 675, 951
ZraI	GACGTC	1 cut(s)	707
Zsp2I	ATGCAT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.