Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8315027.1

Orthogroup ID

OG0007059

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 790

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8315027.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atgttcggttgtcaagtgttgaatggttatgatgcaaagtataggggtaagacagttgttgattatgttgctggagaactgtgcaagaaaccattgtctgttgtcctcctagaaaatgtagacaaggctgatgttgtggctcaaaatagtttgtcccaggctgttttgaccggtaaattttcagattcccatggaagacaagtcagcacaagtaatgcaatgtttattacaactacagaaaaggactgcagcattctcacttctaaaaaggcaccttccaactattccgaggaaagaatctcacaagcaaaagggtggcccttgcagattacagttgaatgcgcgcttgaaggcattactgtaagccaaaactggaggacatcctccaatacaactaaagaaagcatccctcattttctgaacaaaaggaagctgtctggtacagatgaacctctagagctagtctcagagacgagtaaacggcctaacaaaacgttgactaggtatctggatctcaaccttccagctgaagagaatgcagtgcaacgcctagatgatgagacctccgaaaatgactgcttctctgaaaactccaattcctggttgcaagaattcaccgatcaggtggatgaaacagtggtattcaagccggttgatttcgatgcacttgctgagaaaatatcaaaggagatcaaaaacagtttccacaagcttgttggttcagactgtttgctagaaatcgacacacaggtcatagaacaactacttgcagctgcatatttgtcagac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0010033 GO:0014070 GO:0033993 GO:0042221 GO:0050896 GO:1901700 GO:1902347

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_2 Clp_N

Protein Analysis

263

Amino Acids

29.27

Weight (kDa)

4.84

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40130 AT2G40130
fragaria_vesca	FvH4_7g24540 FvH4_7g24540
malus_domestica	MD01G1153400.v1.1 MD07G1222400.v1.1
prunus_persica	Prupe.2G250700_v2.0.a1 Prupe.2G250700_v2.0.a1
pyrus_communis	pycom01g17100 pycom07g20100 pycom07g20110
rosa_chinensis	RchiOBHm_Chr1g0370371
rosa_laevigata	RLG00000027054
rosa_multiflora	Rmu_co8224134.1_g000001 Rmu_co8315027.1_g000001 Rmu_sc0006707.1_g000030 Rmu_sc0029129.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286640
rosa_rugosa	Rorug01G0355800 Rorug01G0355900
rosa_samantha	Rh1AG364200 Rh1BG327500 Rh1CG340500 Rh1DG357800
rosa_wichuraiana	Rw1G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	749
AccB1I	GGYRCC	1 cut(s)	271
AccB7I	CCANNNNNTGG	1 cut(s)	600
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	344
AclI	AACGTT	1 cut(s)	494
AclWI	GGATC	1 cut(s)	519
AcsI	RAATTY	2 cut(s)	176, 611
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	1 cut(s)	442
AfiI	CCNNNNNNNGG	1 cut(s)	600
AgeI	ACCGGT	1 cut(s)	170
AgsI	TTSAA	4 cut(s)	22, 338, 350, 646
AjnI	CCWGG	2 cut(s)	156, 599
AluBI	AGCT	5 cut(s)	433, 460, 527, 712, 773
AluI	AGCT	5 cut(s)	433, 460, 527, 712, 773
Alw26I	GTCTC	3 cut(s)	464, 469, 554
AlwI	GGATC	1 cut(s)	519
AoxI	GGCC	2 cut(s)	317, 482
ApeKI	GCWGC	3 cut(s)	249, 770, 773
ApoI	RAATTY	2 cut(s)	176, 611
AsiGI	ACCGGT	1 cut(s)	170
AspLEI	GCGC	2 cut(s)	344, 346
AspS9I	GGNCC	1 cut(s)	318
AsuHPI	GGTGA	1 cut(s)	607
BanI	GGYRCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	202
BbvI	GCAGC	3 cut(s)	261, 760, 782
BceAI	ACGGC	1 cut(s)	497
BcgI	CGANNNNNNTGC	2 cut(s)	650, 684
BciT130I	CCWGG	2 cut(s)	158, 601
BcoDI	GTCTC	3 cut(s)	464, 469, 554
BfaI	CTAG	6 cut(s)	110, 455, 461, 501, 551, 734
BfmI	CTRYAG	2 cut(s)	234, 247
BisI	GCNGC	3 cut(s)	250, 771, 774
BlsI	GCNGC	3 cut(s)	251, 772, 775
Bme1390I	CCNGG	2 cut(s)	158, 601
BmgT120I	GGNCC	1 cut(s)	318
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	2 cut(s)	158, 601
BmsI	GCATC	3 cut(s)	22, 414, 652
BpiI	GAAGAC	1 cut(s)	202
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpmI	CTGGAG	2 cut(s)	93, 394
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	3 cut(s)	156, 190, 288
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	600
Bse118I	RCCGGY	2 cut(s)	170, 649
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	158, 601
BseDI	CCNNGG	3 cut(s)	156, 190, 288
BseGI	GGATG	3 cut(s)	380, 405, 634
BseLI	CCNNNNNNNGG	1 cut(s)	600
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	480, 663
BseNI	ACTGG	1 cut(s)	377
BsePI	GCGCGC	1 cut(s)	342
BseXI	GCAGC	3 cut(s)	261, 760, 782
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	2 cut(s)	319, 484
BshNI	GGYRCC	1 cut(s)	271
BshTI	ACCGGT	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	171, 650
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	600
BsmAI	GTCTC	3 cut(s)	464, 469, 554
BsmBI	CGTCTC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	139
BsmI	GAATGC	3 cut(s)	252, 344, 541
BsnI	GGCC	2 cut(s)	319, 484
Bso31I	GGTCTC	1 cut(s)	554
Bsp143I	GATC	3 cut(s)	511, 619, 690
Bsp19I	CCATGG	1 cut(s)	190
BspANI	GGCC	2 cut(s)	319, 484
BspCNI	CTCAG	2 cut(s)	479, 664
BspFNI	CGCG	1 cut(s)	344
BspLI	GGNNCC	1 cut(s)	273
BspMAI	CTGCAG	1 cut(s)	251
BspPI	GGATC	1 cut(s)	519
BspT107I	GGYRCC	1 cut(s)	271
BspTNI	GGTCTC	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	2 cut(s)	170, 649
BsrI	ACTGG	1 cut(s)	377
BssAI	RCCGGY	2 cut(s)	170, 649
BssECI	CCNNGG	3 cut(s)	156, 190, 288
BssHII	GCGCGC	1 cut(s)	342
BssMI	GATC	3 cut(s)	511, 619, 690
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	158, 601
Bst4CI	ACNGT	7 cut(s)	55, 81, 334, 361, 637, 701, 728
Bst6I	CTCTTC	1 cut(s)	525
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	466, 672
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	3 cut(s)	380, 405, 634
BstFNI	CGCG	1 cut(s)	344
BstHHI	GCGC	2 cut(s)	344, 346
BstKTI	GATC	3 cut(s)	514, 622, 693
BstMAI	GTCTC	3 cut(s)	464, 469, 554
BstMBI	GATC	3 cut(s)	511, 619, 690
BstNI	CCWGG	2 cut(s)	158, 601
BstSCI	CCNGG	2 cut(s)	156, 599
BstSFI	CTRYAG	2 cut(s)	234, 247
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	3 cut(s)	261, 760, 782
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	319, 484
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	3 cut(s)	380, 405, 634
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	2 cut(s)	546, 642
Cac8I	GCNNGC	1 cut(s)	344
CfoI	GCGC	2 cut(s)	344, 346
Cfr10I	RCCGGY	2 cut(s)	170, 649
Cfr13I	GGNCC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	441
CspAI	ACCGGT	1 cut(s)	170
CviAII	CATG	1 cut(s)	191
CviQI	GTAC	1 cut(s)	441
DdeI	CTNAG	2 cut(s)	466, 672
DpnI	GATC	3 cut(s)	513, 621, 692
DpnII	GATC	3 cut(s)	511, 619, 690
DrdI	GACNNNNNNGTC	1 cut(s)	749
DseDI	GACNNNNNNGTC	1 cut(s)	749
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	190
Eco31I	GGTCTC	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	549
EcoRI	GAATTC	1 cut(s)	611
EcoRII	CCWGG	2 cut(s)	156, 599
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	464
FaeI	CATG	1 cut(s)	194
FaiI	YATR	6 cut(s)	30, 42, 66, 192, 755, 778
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	3 cut(s)	250, 771, 774
FokI	GGATG	3 cut(s)	367, 392, 641
Fsp4HI	GCNGC	3 cut(s)	250, 771, 774
FspBI	CTAG	6 cut(s)	110, 455, 461, 501, 551, 734
GlaI	GCGC	2 cut(s)	343, 345
GluI	GCNGC	3 cut(s)	250, 771, 774
GsuI	CTGGAG	2 cut(s)	93, 394
HaeIII	GGCC	2 cut(s)	319, 484
HapII	CCGG	2 cut(s)	171, 650
HhaI	GCGC	2 cut(s)	344, 346
Hin1II	CATG	1 cut(s)	194
Hin6I	GCGC	2 cut(s)	342, 344
HinP1I	GCGC	2 cut(s)	342, 344
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HindIII	AAGCTT	1 cut(s)	710
HinfI	GANTC	2 cut(s)	185, 297
HpaII	CCGG	2 cut(s)	171, 650
HphI	GGTGA	1 cut(s)	607
Hpy166II	GTNNAC	3 cut(s)	121, 479, 498
Hpy188I	TCNGA	8 cut(s)	184, 289, 420, 469, 568, 586, 724, 787
Hpy188III	TCNNGA	2 cut(s)	455, 509
Hpy8I	GTNNAC	3 cut(s)	121, 479, 498
HpyAV	CCTTC	3 cut(s)	285, 344, 530
HpyCH4III	ACNGT	7 cut(s)	55, 81, 334, 361, 637, 701, 728
HpyCH4IV	ACGT	1 cut(s)	494
HpyF3I	CTNAG	2 cut(s)	466, 672
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	1 cut(s)	194
HspAI	GCGC	2 cut(s)	342, 344
Kzo9I	GATC	3 cut(s)	511, 619, 690
Lsp1109I	GCAGC	3 cut(s)	261, 760, 782
LweI	GCATC	3 cut(s)	22, 414, 652
MaeI	CTAG	6 cut(s)	110, 455, 461, 501, 551, 734
MaeII	ACGT	1 cut(s)	494
MalI	GATC	3 cut(s)	513, 621, 692
MboI	GATC	3 cut(s)	511, 619, 690
MboII	GAAGA	2 cut(s)	207, 542
MflI	RGATCY	1 cut(s)	511
MluCI	AATT	3 cut(s)	176, 595, 611
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	7 cut(s)	116, 283, 369, 394, 420, 462, 574
MspA1I	CMGCKG	2 cut(s)	527, 773
MspI	CCGG	2 cut(s)	171, 650
MspR9I	CCNGG	2 cut(s)	158, 601
Mva1269I	GAATGC	3 cut(s)	252, 344, 541
MvaI	CCWGG	2 cut(s)	158, 601
MvnI	CGCG	1 cut(s)	344
NcoI	CCATGG	1 cut(s)	190
NdeII	GATC	3 cut(s)	511, 619, 690
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	273
PauI	GCGCGC	1 cut(s)	342
PctI	GAATGC	3 cut(s)	252, 344, 541
PfeI	GAWTC	2 cut(s)	185, 297
PflMI	CCANNNNNTGG	1 cut(s)	600
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	251, 772, 775
Psp1406I	AACGTT	1 cut(s)	494
Psp6I	CCWGG	2 cut(s)	156, 599
PspGI	CCWGG	2 cut(s)	156, 599
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	318
PstI	CTGCAG	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	511
PteI	GCGCGC	1 cut(s)	342
PvuII	CAGCTG	2 cut(s)	527, 773
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
SatI	GCNGC	3 cut(s)	250, 771, 774
Sau3AI	GATC	3 cut(s)	511, 619, 690
Sau96I	GGNCC	1 cut(s)	318
ScrFI	CCNGG	2 cut(s)	158, 601
SfaNI	GCATC	3 cut(s)	22, 414, 652
SfcI	CTRYAG	2 cut(s)	234, 247
Sse9I	AATT	3 cut(s)	176, 595, 611
SspMI	CTAG	6 cut(s)	110, 455, 461, 501, 551, 734
StyD4I	CCNGG	2 cut(s)	156, 599
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	7 cut(s)	55, 81, 334, 361, 637, 701, 728
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	2 cut(s)	660, 741
TasI	AATT	3 cut(s)	176, 595, 611
TfiI	GAWTC	2 cut(s)	185, 297
TscAI	CASTG	2 cut(s)	546, 642
TseI	GCWGC	3 cut(s)	249, 770, 773
TspDTI	ATGAA	2 cut(s)	462, 645
TspRI	CASTG	2 cut(s)	546, 642
Van91I	CCANNNNNTGG	1 cut(s)	600
XapI	RAATTY	2 cut(s)	176, 611
XbaI	TCTAGA	1 cut(s)	454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	713
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	6 cut(s)	110, 455, 461, 501, 551, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.