AAA domain (Cdc48 subfamily)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G40130 AT2G40130 |
| fragaria_vesca | FvH4_7g24540 FvH4_7g24540 |
| malus_domestica | MD01G1153400.v1.1 MD07G1222400.v1.1 |
| prunus_persica | Prupe.2G250700_v2.0.a1 Prupe.2G250700_v2.0.a1 |
| pyrus_communis | pycom01g17100 pycom07g20100 pycom07g20110 |
| rosa_chinensis | RchiOBHm_Chr1g0370371 |
| rosa_laevigata | RLG00000027054 |
| rosa_multiflora | Rmu_co8224134.1_g000001 Rmu_co8315027.1_g000001 Rmu_sc0006707.1_g000030 Rmu_sc0029129.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00286640 |
| rosa_rugosa | Rorug01G0355800 Rorug01G0355900 |
| rosa_samantha | Rh1AG364200 Rh1BG327500 Rh1CG340500 Rh1DG357800 |
| rosa_wichuraiana | Rw1G032050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 440, 443 |
| AatII | GACGTC | 1 cut(s) | 110 |
| Acc36I | ACCTGC | 1 cut(s) | 1322 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1190 |
| AccBSI | CCGCTC | 2 cut(s) | 128, 2611 |
| AccI | GTMKAC | 1 cut(s) | 696 |
| AccII | CGCG | 8 cut(s) | 80, 82, 152, 172, 174, 535, 947, 1008 |
| AclWI | GGATC | 3 cut(s) | 2000, 2259, 2269 |
| AcoI | YGGCCR | 3 cut(s) | 21, 97, 300 |
| AcsI | RAATTY | 4 cut(s) | 631, 2120, 2257, 2465 |
| AcuI | CTGAAG | 1 cut(s) | 2832 |
| AcvI | CACGTG | 1 cut(s) | 970 |
| AcyI | GRCGYC | 2 cut(s) | 107, 162 |
| AfaI | GTAC | 3 cut(s) | 581, 3090, 3222 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 40, 211, 312, 589, 590, 1190, 1698, 2212, 2887 |
| AjiI | CACGTC | 1 cut(s) | 865 |
| AjnI | CCWGG | 4 cut(s) | 23, 895, 1154, 2229 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2138, 2170 |
| Alw21I | GWGCWC | 5 cut(s) | 225, 408, 2038, 2849, 3193 |
| Alw26I | GTCTC | 6 cut(s) | 241, 256, 1400, 1548, 2752, 2891 |
| AlwI | GGATC | 3 cut(s) | 2000, 2259, 2269 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 415, 1108, 2171 |
| Ama87I | CYCGRG | 6 cut(s) | 341, 656, 1742, 1909, 1978, 2262 |
| ApeKI | GCWGC | 9 cut(s) | 47, 337, 373, 1102, 1130, 1805, 2652, 2737, 3035 |
| ApoI | RAATTY | 4 cut(s) | 631, 2120, 2257, 2465 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2276, 2308 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2966 |
| AspS9I | GGNCC | 4 cut(s) | 893, 1158, 2168, 2766 |
| AsuC2I | CCSGG | 4 cut(s) | 199, 248, 440, 584 |
| AsuHPI | GGTGA | 9 cut(s) | 587, 994, 1253, 1309, 1740, 1807, 2320, 2437, 3133 |
| AsuII | TTCGAA | 1 cut(s) | 287 |
| AsuNHI | GCTAGC | 1 cut(s) | 1037 |
| AvaI | CYCGRG | 6 cut(s) | 341, 656, 1742, 1909, 1978, 2262 |
| AvaII | GGWCC | 2 cut(s) | 1158, 2168 |
| BalI | TGGCCA | 1 cut(s) | 23 |
| BanII | GRGCYC | 4 cut(s) | 225, 408, 2038, 2849 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1306, 1338 |
| BbrPI | CACGTG | 1 cut(s) | 970 |
| BbsI | GAAGAC | 5 cut(s) | 448, 1241, 2386, 2491, 2652 |
| Bbv12I | GWGCWC | 5 cut(s) | 225, 408, 2038, 2849, 3193 |
| BbvCI | CCTCAGC | 2 cut(s) | 230, 2211 |
| BbvI | GCAGC | 9 cut(s) | 59, 349, 385, 1114, 1117, 1792, 2664, 2749, 3047 |
| BceAI | ACGGC | 5 cut(s) | 53, 112, 763, 1050, 2183 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 94, 128 |
| BciT130I | CCWGG | 4 cut(s) | 25, 897, 1156, 2231 |
| BclI | TGATCA | 1 cut(s) | 2884 |
| BcnI | CCSGG | 4 cut(s) | 199, 248, 440, 584 |
| BcoDI | GTCTC | 6 cut(s) | 241, 256, 1400, 1548, 2752, 2891 |
| BfaI | CTAG | 9 cut(s) | 1038, 1347, 1767, 1854, 2109, 2732, 2784, 2999, 3213 |
| BfmI | CTRYAG | 3 cut(s) | 783, 1632, 3094 |
| BfuAI | ACCTGC | 1 cut(s) | 1322 |
| BglII | AGATCT | 2 cut(s) | 1723, 1879 |
| BmcAI | AGTACT | 1 cut(s) | 3090 |
| Bme1390I | CCNGG | 8 cut(s) | 25, 199, 248, 440, 584, 897, 1156, 2231 |
| Bme18I | GGWCC | 2 cut(s) | 1158, 2168 |
| BmeT110I | CYCGRG | 6 cut(s) | 341, 656, 1742, 1909, 1978, 2262 |
| BmgBI | CACGTC | 1 cut(s) | 865 |
| BmgT120I | GGNCC | 4 cut(s) | 893, 1158, 2168, 2766 |
| BmiI | GGNNCC | 3 cut(s) | 203, 894, 1374 |
| BmrFI | CCNGG | 8 cut(s) | 25, 199, 248, 440, 584, 897, 1156, 2231 |
| BmrI | ACTGGG | 1 cut(s) | 1102 |
| BmsI | GCATC | 7 cut(s) | 1489, 1635, 2013, 2056, 2531, 2684, 2745 |
| BmtI | GCTAGC | 1 cut(s) | 1041 |
| BmuI | ACTGGG | 1 cut(s) | 1102 |
| BoxI | GACNNNNGTC | 2 cut(s) | 591, 867 |
| BpiI | GAAGAC | 5 cut(s) | 448, 1241, 2386, 2491, 2652 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 639, 671 |
| BpmI | CTGGAG | 6 cut(s) | 239, 392, 523, 755, 1860, 2689 |
| Bpu10I | CCTNAGC | 3 cut(s) | 230, 2211, 2446 |
| Bpu14I | TTCGAA | 1 cut(s) | 287 |
| BpuEI | CTTGAG | 3 cut(s) | 698, 1568, 1748 |
| BpuMI | CCSGG | 4 cut(s) | 199, 248, 440, 584 |
| Bsa29I | ATCGAT | 1 cut(s) | 425 |
| BsaAI | YACGTR | 2 cut(s) | 158, 970 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1722, 1884, 1969 |
| BsaHI | GRCGYC | 2 cut(s) | 107, 162 |
| BsaI | GGTCTC | 2 cut(s) | 256, 1400 |
| BsaWI | WCCGGW | 1 cut(s) | 2302 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 236, 266, 521, 551 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 40, 211, 312, 589, 590, 1190, 1698, 2212, 2887 |
| Bse118I | RCCGGY | 1 cut(s) | 10 |
| Bse1I | ACTGG | 5 cut(s) | 1097, 2278, 2464, 2672, 2715 |
| Bse3DI | GCAATG | 1 cut(s) | 35 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1722, 1884, 1969 |
| BseBI | CCWGG | 4 cut(s) | 25, 897, 1156, 2231 |
| BseCI | ATCGAT | 1 cut(s) | 425 |
| BseJI | GATNNNNATC | 3 cut(s) | 1722, 1884, 1969 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 40, 211, 312, 589, 590, 1190, 1698, 2212, 2887 |
| BseMI | GCAATG | 1 cut(s) | 35 |
| BseNI | ACTGG | 5 cut(s) | 1097, 2278, 2464, 2672, 2715 |
| BsePI | GCGCGC | 3 cut(s) | 80, 170, 172 |
| BseRI | GAGGAG | 3 cut(s) | 244, 652, 1966 |
| BseXI | GCAGC | 9 cut(s) | 59, 349, 385, 1114, 1117, 1792, 2664, 2749, 3047 |
| BsgI | GTGCAG | 2 cut(s) | 98, 2639 |
| Bsh1236I | CGCG | 8 cut(s) | 80, 82, 152, 172, 174, 535, 947, 1008 |
| Bsh1285I | CGRYCG | 2 cut(s) | 247, 444 |
| BshVI | ATCGAT | 1 cut(s) | 425 |
| BsiEI | CGRYCG | 2 cut(s) | 247, 444 |
| BsiHKAI | GWGCWC | 5 cut(s) | 225, 408, 2038, 2849, 3193 |
| BsiHKCI | CYCGRG | 6 cut(s) | 341, 656, 1742, 1909, 1978, 2262 |
| BsiSI | CCGG | 8 cut(s) | 11, 199, 247, 440, 584, 673, 2303, 2361 |
| BslFI | GGGAC | 5 cut(s) | 638, 875, 932, 1109, 2580 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 40, 211, 312, 589, 590, 1190, 1698, 2212, 2887 |
| BsmAI | GTCTC | 6 cut(s) | 241, 256, 1400, 1548, 2752, 2891 |
| BsmBI | CGTCTC | 1 cut(s) | 241 |
| BsmFI | GGGAC | 5 cut(s) | 638, 875, 932, 1109, 2580 |
| BsmI | GAATGC | 1 cut(s) | 2824 |
| Bso31I | GGTCTC | 2 cut(s) | 256, 1400 |
| BsoBI | CYCGRG | 6 cut(s) | 341, 656, 1742, 1909, 1978, 2262 |
| Bsp119I | TTCGAA | 1 cut(s) | 287 |
| Bsp1286I | GDGCHC | 5 cut(s) | 225, 408, 2038, 2849, 3193 |
| Bsp19I | CCATGG | 3 cut(s) | 1137, 1993, 2479 |
| BspDI | ATCGAT | 1 cut(s) | 425 |
| BspFNI | CGCG | 8 cut(s) | 80, 82, 152, 172, 174, 535, 947, 1008 |
| BspHI | TCATGA | 1 cut(s) | 703 |
| BspLI | GGNNCC | 3 cut(s) | 203, 894, 1374 |
| BspMAI | CTGCAG | 2 cut(s) | 1636, 3098 |
| BspMI | ACCTGC | 1 cut(s) | 1322 |
| BspOI | GCTAGC | 1 cut(s) | 1041 |
| BspPI | GGATC | 3 cut(s) | 2000, 2259, 2269 |
| BspQI | GCTCTTC | 1 cut(s) | 1849 |
| BspT104I | TTCGAA | 1 cut(s) | 287 |
| BspTNI | GGTCTC | 2 cut(s) | 256, 1400 |
| BsrBI | CCGCTC | 2 cut(s) | 128, 2611 |
| BsrDI | GCAATG | 1 cut(s) | 35 |
| BsrFI | RCCGGY | 1 cut(s) | 10 |
| BsrI | ACTGG | 5 cut(s) | 1097, 2278, 2464, 2672, 2715 |
| BssAI | RCCGGY | 1 cut(s) | 10 |
| BssHII | GCGCGC | 3 cut(s) | 80, 170, 172 |
| BssNAI | GTATAC | 1 cut(s) | 697 |
| BssNI | GRCGYC | 2 cut(s) | 107, 162 |
| BssT1I | CCWWGG | 3 cut(s) | 1137, 1993, 2479 |
| Bst1107I | GTATAC | 1 cut(s) | 697 |
| Bst2UI | CCWGG | 4 cut(s) | 25, 897, 1156, 2231 |
| Bst4CI | ACNGT | 7 cut(s) | 19, 315, 610, 1682, 2344, 2902, 3148 |
| Bst6I | CTCTTC | 3 cut(s) | 1693, 1849, 2808 |
| BstACI | GRCGYC | 2 cut(s) | 107, 162 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1108 |
| BstBAI | YACGTR | 2 cut(s) | 158, 970 |
| BstBI | TTCGAA | 1 cut(s) | 287 |
| BstDSI | CCRYGG | 4 cut(s) | 69, 1137, 1993, 2479 |
| BstEII | GGTNACC | 2 cut(s) | 593, 1746 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2210, 2885 |
| BstFNI | CGCG | 8 cut(s) | 80, 82, 152, 172, 174, 535, 947, 1008 |
| BstMAI | GTCTC | 6 cut(s) | 241, 256, 1400, 1548, 2752, 2891 |
| BstMCI | CGRYCG | 2 cut(s) | 247, 444 |
| BstNI | CCWGG | 4 cut(s) | 25, 897, 1156, 2231 |
| BstNSI | RCATGY | 1 cut(s) | 1296 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 591, 867 |
| BstPI | GGTNACC | 2 cut(s) | 593, 1746 |
| BstSCI | CCNGG | 8 cut(s) | 23, 197, 246, 438, 582, 895, 1154, 2229 |
| BstSFI | CTRYAG | 3 cut(s) | 783, 1632, 3094 |
| BstUI | CGCG | 8 cut(s) | 80, 82, 152, 172, 174, 535, 947, 1008 |
| BstV1I | GCAGC | 9 cut(s) | 59, 349, 385, 1114, 1117, 1792, 2664, 2749, 3047 |
| BstV2I | GAAGAC | 5 cut(s) | 448, 1241, 2386, 2491, 2652 |
| BstX2I | RGATCY | 3 cut(s) | 1723, 1879, 2251 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 400, 1168 |
| BstYI | RGATCY | 3 cut(s) | 1723, 1879, 2251 |
| BstZ17I | GTATAC | 1 cut(s) | 697 |
| Bsu15I | ATCGAT | 1 cut(s) | 425 |
| BsuTUI | ATCGAT | 1 cut(s) | 425 |
| BtgI | CCRYGG | 4 cut(s) | 69, 1137, 1993, 2479 |
| BtrI | CACGTC | 1 cut(s) | 865 |
| BtsI | GCAGTG | 2 cut(s) | 110, 2829 |
| BtsIMutI | CAGTG | 3 cut(s) | 110, 966, 2829 |
| BveI | ACCTGC | 1 cut(s) | 1322 |
| CaiI | CAGNNNCTG | 3 cut(s) | 415, 1108, 2171 |
| CciI | TCATGA | 1 cut(s) | 703 |
| Cfr10I | RCCGGY | 1 cut(s) | 10 |
| Cfr13I | GGNCC | 4 cut(s) | 893, 1158, 2168, 2766 |
| ClaI | ATCGAT | 1 cut(s) | 425 |
| CseI | GACGC | 3 cut(s) | 170, 223, 2936 |
| Csp6I | GTAC | 3 cut(s) | 580, 3089, 3221 |
| CviAII | CATG | 8 cut(s) | 298, 704, 1138, 1293, 1623, 1994, 2480, 2741 |
| CviQI | GTAC | 3 cut(s) | 580, 3089, 3221 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 440, 443 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 440, 443 |
| EaeI | YGGCCR | 3 cut(s) | 21, 97, 300 |
| Eam1104I | CTCTTC | 3 cut(s) | 1693, 1849, 2808 |
| EarI | CTCTTC | 3 cut(s) | 1693, 1849, 2808 |
| EciI | GGCGGA | 2 cut(s) | 379, 779 |
| Ecl136II | GAGCTC | 4 cut(s) | 223, 406, 2036, 2847 |
| Eco130I | CCWWGG | 3 cut(s) | 1137, 1993, 2479 |
| Eco24I | GRGCYC | 4 cut(s) | 225, 408, 2038, 2849 |
| Eco31I | GGTCTC | 2 cut(s) | 256, 1400 |
| Eco47I | GGWCC | 2 cut(s) | 1158, 2168 |
| Eco53kI | GAGCTC | 4 cut(s) | 223, 406, 2036, 2847 |
| Eco57I | CTGAAG | 1 cut(s) | 2832 |
| Eco72I | CACGTG | 1 cut(s) | 970 |
| Eco88I | CYCGRG | 6 cut(s) | 341, 656, 1742, 1909, 1978, 2262 |
| Eco91I | GGTNACC | 2 cut(s) | 593, 1746 |
| EcoICRI | GAGCTC | 4 cut(s) | 223, 406, 2036, 2847 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2210, 2885 |
| EcoO109I | RGGNCCY | 2 cut(s) | 893, 2168 |
| EcoO65I | GGTNACC | 2 cut(s) | 593, 1746 |
| EcoRII | CCWGG | 4 cut(s) | 23, 895, 1154, 2229 |
| EcoT14I | CCWWGG | 3 cut(s) | 1137, 1993, 2479 |
| EcoT22I | ATGCAT | 1 cut(s) | 1628 |
| EcoT38I | GRGCYC | 4 cut(s) | 225, 408, 2038, 2849 |
| ErhI | CCWWGG | 3 cut(s) | 1137, 1993, 2479 |
| Esp3I | CGTCTC | 1 cut(s) | 241 |
| FaeI | CATG | 8 cut(s) | 301, 707, 1141, 1296, 1626, 1997, 2483, 2744 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2865, 2897, 2951, 2983 |
| FaqI | GGGAC | 5 cut(s) | 638, 875, 932, 1109, 2580 |
| FatI | CATG | 8 cut(s) | 297, 703, 1137, 1292, 1622, 1993, 2479, 2740 |
| FauI | CCCGC | 6 cut(s) | 201, 285, 460, 540, 1001, 1262 |
| FbaI | TGATCA | 1 cut(s) | 2884 |
| FblI | GTMKAC | 1 cut(s) | 696 |
| FriOI | GRGCYC | 4 cut(s) | 225, 408, 2038, 2849 |
| FspBI | CTAG | 9 cut(s) | 1038, 1347, 1767, 1854, 2109, 2732, 2784, 2999, 3213 |
| GsuI | CTGGAG | 6 cut(s) | 239, 392, 523, 755, 1860, 2689 |
| HapII | CCGG | 8 cut(s) | 11, 199, 247, 440, 584, 673, 2303, 2361 |
| HgaI | GACGC | 3 cut(s) | 170, 223, 2936 |
| Hin1I | GRCGYC | 2 cut(s) | 107, 162 |
| Hin1II | CATG | 8 cut(s) | 301, 707, 1141, 1296, 1626, 1997, 2483, 2744 |
| HincII | GTYRAC | 2 cut(s) | 2781, 2983 |
| HindII | GTYRAC | 2 cut(s) | 2781, 2983 |
| HpaII | CCGG | 8 cut(s) | 11, 199, 247, 440, 584, 673, 2303, 2361 |
| HphI | GGTGA | 9 cut(s) | 587, 994, 1253, 1309, 1740, 1807, 2320, 2437, 3133 |
| Hpy166II | GTNNAC | 3 cut(s) | 697, 2781, 2983 |
| Hpy8I | GTNNAC | 3 cut(s) | 697, 2781, 2983 |
| Hpy99I | CGWCG | 3 cut(s) | 109, 275, 437 |
| HpyAV | CCTTC | 8 cut(s) | 327, 919, 1218, 1365, 1667, 2136, 2557, 2813 |
| HpyCH4III | ACNGT | 7 cut(s) | 19, 315, 610, 1682, 2344, 2902, 3148 |
| HpyCH4IV | ACGT | 5 cut(s) | 107, 157, 864, 969, 2777 |
| HpySE526I | ACGT | 5 cut(s) | 107, 157, 864, 969, 2777 |
| Hsp92I | GRCGYC | 2 cut(s) | 107, 162 |
| Hsp92II | CATG | 8 cut(s) | 301, 707, 1141, 1296, 1626, 1997, 2483, 2744 |
| Ksp22I | TGATCA | 1 cut(s) | 2884 |
| LguI | GCTCTTC | 1 cut(s) | 1849 |
| Lsp1109I | GCAGC | 9 cut(s) | 59, 349, 385, 1114, 1117, 1792, 2664, 2749, 3047 |
| LweI | GCATC | 7 cut(s) | 1489, 1635, 2013, 2056, 2531, 2684, 2745 |
| MaeI | CTAG | 9 cut(s) | 1038, 1347, 1767, 1854, 2109, 2732, 2784, 2999, 3213 |
| MaeII | ACGT | 5 cut(s) | 107, 157, 864, 969, 2777 |
| MbiI | CCGCTC | 2 cut(s) | 128, 2611 |
| MfeI | CAATTG | 1 cut(s) | 2237 |
| MflI | RGATCY | 3 cut(s) | 1723, 1879, 2251 |
| MhlI | GDGCHC | 5 cut(s) | 225, 408, 2038, 2849, 3193 |
| MlsI | TGGCCA | 1 cut(s) | 23 |
| MluNI | TGGCCA | 1 cut(s) | 23 |
| MlyI | GAGTC | 8 cut(s) | 950, 973, 1181, 1739, 1990, 2422, 2562, 2978 |
| MmeI | TCCRAC | 4 cut(s) | 975, 1785, 2598, 3159 |
| Mox20I | TGGCCA | 1 cut(s) | 23 |
| Mph1103I | ATGCAT | 1 cut(s) | 1628 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2966 |
| MscI | TGGCCA | 1 cut(s) | 23 |
| MseI | TTAA | 2 cut(s) | 572, 614 |
| MslI | CAYNNNNRTG | 1 cut(s) | 398 |
| Msp20I | TGGCCA | 1 cut(s) | 23 |
| MspA1I | CMGCKG | 4 cut(s) | 794, 1805, 2810, 3038 |
| MspI | CCGG | 8 cut(s) | 11, 199, 247, 440, 584, 673, 2303, 2361 |
| MspR9I | CCNGG | 8 cut(s) | 25, 199, 248, 440, 584, 897, 1156, 2231 |
| MunI | CAATTG | 1 cut(s) | 2237 |
| Mva1269I | GAATGC | 1 cut(s) | 2824 |
| MvaI | CCWGG | 4 cut(s) | 25, 897, 1156, 2231 |
| MvnI | CGCG | 8 cut(s) | 80, 82, 152, 172, 174, 535, 947, 1008 |
| NciI | CCSGG | 4 cut(s) | 199, 248, 440, 584 |
| NcoI | CCATGG | 3 cut(s) | 1137, 1993, 2479 |
| NheI | GCTAGC | 1 cut(s) | 1037 |
| NlaIII | CATG | 8 cut(s) | 301, 707, 1141, 1296, 1626, 1997, 2483, 2744 |
| NlaIV | GGNNCC | 3 cut(s) | 203, 894, 1374 |
| NmeAIII | GCCGAG | 2 cut(s) | 847, 1003 |
| NsiI | ATGCAT | 1 cut(s) | 1628 |
| NspI | RCATGY | 1 cut(s) | 1296 |
| NspV | TTCGAA | 1 cut(s) | 287 |
| PaeR7I | CTCGAG | 1 cut(s) | 1978 |
| PagI | TCATGA | 1 cut(s) | 703 |
| PauI | GCGCGC | 3 cut(s) | 80, 170, 172 |
| PciSI | GCTCTTC | 1 cut(s) | 1849 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 60, 279, 441, 596, 975 |
| PctI | GAATGC | 1 cut(s) | 2824 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2966 |
| PflFI | GACNNNGTC | 2 cut(s) | 248, 440 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1190 |
| PleI | GAGTC | 8 cut(s) | 950, 972, 1180, 1738, 1989, 2422, 2562, 2978 |
| PmaCI | CACGTG | 1 cut(s) | 970 |
| PmlI | CACGTG | 1 cut(s) | 970 |
| PpsI | GAGTC | 8 cut(s) | 950, 972, 1180, 1738, 1989, 2422, 2562, 2978 |
| Ppu21I | YACGTR | 2 cut(s) | 158, 970 |
| PpuMI | RGGWCCY | 1 cut(s) | 2168 |
| PshAI | GACNNNNGTC | 2 cut(s) | 591, 867 |
| Psp124BI | GAGCTC | 4 cut(s) | 225, 408, 2038, 2849 |
| Psp5II | RGGWCCY | 1 cut(s) | 2168 |
| Psp6I | CCWGG | 4 cut(s) | 23, 895, 1154, 2229 |
| PspCI | CACGTG | 1 cut(s) | 970 |
| PspEI | GGTNACC | 2 cut(s) | 593, 1746 |
| PspGI | CCWGG | 4 cut(s) | 23, 895, 1154, 2229 |
| PspN4I | GGNNCC | 3 cut(s) | 203, 894, 1374 |
| PspPI | GGNCC | 4 cut(s) | 893, 1158, 2168, 2766 |
| PspPPI | RGGWCCY | 1 cut(s) | 2168 |
| PspXI | VCTCGAGB | 1 cut(s) | 1978 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2539, 2571 |
| PstI | CTGCAG | 2 cut(s) | 1636, 3098 |
| PstNI | CAGNNNCTG | 3 cut(s) | 415, 1108, 2171 |
| PsuI | RGATCY | 3 cut(s) | 1723, 1879, 2251 |
| PsyI | GACNNNGTC | 2 cut(s) | 248, 440 |
| PteI | GCGCGC | 3 cut(s) | 80, 170, 172 |
| PvuII | CAGCTG | 3 cut(s) | 1805, 2810, 3038 |
| RsaI | GTAC | 3 cut(s) | 581, 3090, 3222 |
| RsaNI | GTAC | 3 cut(s) | 580, 3089, 3221 |
| RseI | CAYNNNNRTG | 1 cut(s) | 398 |
| SacI | GAGCTC | 4 cut(s) | 225, 408, 2038, 2849 |
| SapI | GCTCTTC | 1 cut(s) | 1849 |
| SaqAI | TTAA | 2 cut(s) | 572, 614 |
| Sau96I | GGNCC | 4 cut(s) | 893, 1158, 2168, 2766 |
| ScaI | AGTACT | 1 cut(s) | 3090 |
| SchI | GAGTC | 8 cut(s) | 950, 973, 1181, 1739, 1990, 2422, 2562, 2978 |
| ScrFI | CCNGG | 8 cut(s) | 25, 199, 248, 440, 584, 897, 1156, 2231 |
| SduI | GDGCHC | 5 cut(s) | 225, 408, 2038, 2849, 3193 |
| SfaNI | GCATC | 7 cut(s) | 1489, 1635, 2013, 2056, 2531, 2684, 2745 |
| SfcI | CTRYAG | 3 cut(s) | 783, 1632, 3094 |
| Sfr274I | CTCGAG | 1 cut(s) | 1978 |
| SfuI | TTCGAA | 1 cut(s) | 287 |
| SinI | GGWCC | 2 cut(s) | 1158, 2168 |
| SlaI | CTCGAG | 1 cut(s) | 1978 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 398 |
| SmlI | CTYRAG | 4 cut(s) | 713, 1547, 1727, 1978 |
| SmoI | CTYRAG | 4 cut(s) | 713, 1547, 1727, 1978 |
| SspI | AATATT | 2 cut(s) | 913, 1930 |
| SspMI | CTAG | 9 cut(s) | 1038, 1347, 1767, 1854, 2109, 2732, 2784, 2999, 3213 |
| SstI | GAGCTC | 4 cut(s) | 225, 408, 2038, 2849 |
| StyD4I | CCNGG | 8 cut(s) | 23, 197, 246, 438, 582, 895, 1154, 2229 |
| StyI | CCWWGG | 3 cut(s) | 1137, 1993, 2479 |
| TaaI | ACNGT | 7 cut(s) | 19, 315, 610, 1682, 2344, 2902, 3148 |
| TaiI | ACGT | 5 cut(s) | 110, 160, 867, 972, 2780 |
| TatI | WGTACW | 2 cut(s) | 3088, 3220 |
| TauI | GCSGC | 4 cut(s) | 87, 305, 753, 2614 |
| Tru1I | TTAA | 2 cut(s) | 572, 614 |
| Tru9I | TTAA | 2 cut(s) | 572, 614 |
| TscAI | CASTG | 3 cut(s) | 117, 966, 2829 |
| TseI | GCWGC | 9 cut(s) | 47, 337, 373, 1102, 1130, 1805, 2652, 2737, 3035 |
| TspDTI | ATGAA | 6 cut(s) | 720, 805, 1611, 1734, 2739, 2757 |
| TspGWI | ACGGA | 2 cut(s) | 56, 2238 |
| TspRI | CASTG | 3 cut(s) | 117, 966, 2829 |
| Tth111I | GACNNNGTC | 2 cut(s) | 248, 440 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1190 |
| VpaK11BI | GGWCC | 2 cut(s) | 1158, 2168 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2210, 2885 |
| XapI | RAATTY | 4 cut(s) | 631, 2120, 2257, 2465 |
| XbaI | TCTAGA | 2 cut(s) | 2108, 2731 |
| XceI | RCATGY | 1 cut(s) | 1296 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1768 |
| XhoI | CTCGAG | 1 cut(s) | 1978 |
| XmiI | GTMKAC | 1 cut(s) | 696 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2966 |
| XspI | CTAG | 9 cut(s) | 1038, 1347, 1767, 1854, 2109, 2732, 2784, 2999, 3213 |
| ZraI | GACGTC | 1 cut(s) | 108 |
| ZrmI | AGTACT | 1 cut(s) | 3090 |
| Zsp2I | ATGCAT | 1 cut(s) | 1628 |