AAA domain (Cdc48 subfamily)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G40130 AT2G40130 |
| fragaria_vesca | FvH4_7g24540 FvH4_7g24540 |
| malus_domestica | MD01G1153400.v1.1 MD07G1222400.v1.1 |
| prunus_persica | Prupe.2G250700_v2.0.a1 Prupe.2G250700_v2.0.a1 |
| pyrus_communis | pycom01g17100 pycom07g20100 pycom07g20110 |
| rosa_chinensis | RchiOBHm_Chr1g0370371 |
| rosa_laevigata | RLG00000027054 |
| rosa_multiflora | Rmu_co8224134.1_g000001 Rmu_co8315027.1_g000001 Rmu_sc0006707.1_g000030 Rmu_sc0029129.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00286640 |
| rosa_rugosa | Rorug01G0355800 Rorug01G0355900 |
| rosa_samantha | Rh1AG364200 Rh1BG327500 Rh1CG340500 Rh1DG357800 |
| rosa_wichuraiana | Rw1G032050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 4 cut(s) | 281, 443, 446, 3014 |
| AatII | GACGTC | 1 cut(s) | 1867 |
| Acc36I | ACCTGC | 1 cut(s) | 1316 |
| AccB1I | GGYRCC | 2 cut(s) | 1239, 2536 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1184, 2865 |
| AccBSI | CCGCTC | 2 cut(s) | 540, 2082 |
| AccI | GTMKAC | 1 cut(s) | 2385 |
| AccII | CGCG | 9 cut(s) | 56, 80, 98, 159, 170, 172, 199, 249, 2609 |
| AccIII | TCCGGA | 4 cut(s) | 40, 477, 583, 1667 |
| AclWI | GGATC | 4 cut(s) | 823, 1976, 2235, 2784 |
| AcoI | YGGCCR | 3 cut(s) | 21, 300, 2582 |
| AcsI | RAATTY | 7 cut(s) | 853, 1426, 1582, 1815, 2233, 2441, 2876 |
| AcuI | CTGAAG | 5 cut(s) | 966, 1551, 1557, 2061, 2814 |
| AcyI | GRCGYC | 1 cut(s) | 1864 |
| AfaI | GTAC | 2 cut(s) | 2707, 3059 |
| AgeI | ACCGGT | 1 cut(s) | 2435 |
| AjnI | CCWGG | 5 cut(s) | 23, 543, 901, 2421, 2864 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2114, 2146 |
| Alw21I | GWGCWC | 4 cut(s) | 225, 411, 485, 791 |
| AlwI | GGATC | 4 cut(s) | 823, 1976, 2235, 2784 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 418, 1114 |
| Ama87I | CYCGRG | 2 cut(s) | 589, 625 |
| Aor13HI | TCCGGA | 4 cut(s) | 40, 477, 583, 1667 |
| ApeKI | GCWGC | 7 cut(s) | 337, 373, 376, 379, 1108, 2514, 3035 |
| ApoI | RAATTY | 7 cut(s) | 853, 1426, 1582, 1815, 2233, 2441, 2876 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1373, 1405, 2252, 2284 |
| AsiGI | ACCGGT | 1 cut(s) | 2435 |
| AspS9I | GGNCC | 9 cut(s) | 49, 244, 586, 593, 609, 899, 1152, 1376, 2144 |
| AsuC2I | CCSGG | 5 cut(s) | 443, 590, 591, 597, 781 |
| AsuHPI | GGTGA | 8 cut(s) | 186, 512, 971, 979, 1001, 1469, 2872, 3186 |
| AsuNHI | GCTAGC | 2 cut(s) | 1043, 1340 |
| AvaI | CYCGRG | 2 cut(s) | 589, 625 |
| AvaII | GGWCC | 6 cut(s) | 244, 586, 593, 899, 1152, 2144 |
| BaeGI | GKGCMC | 1 cut(s) | 178 |
| BalI | TGGCCA | 1 cut(s) | 2584 |
| BanI | GGYRCC | 2 cut(s) | 1239, 2536 |
| BanII | GRGCYC | 5 cut(s) | 225, 411, 485, 791, 2014 |
| BbsI | GAAGAC | 6 cut(s) | 451, 954, 1406, 1539, 2362, 2467 |
| Bbv12I | GWGCWC | 4 cut(s) | 225, 411, 485, 791 |
| BbvCI | CCTCAGC | 2 cut(s) | 863, 2187 |
| BbvI | GCAGC | 7 cut(s) | 349, 385, 388, 391, 1120, 2526, 3047 |
| BccI | CCATC | 7 cut(s) | 314, 749, 1156, 1357, 1406, 2237, 2242 |
| BceAI | ACGGC | 5 cut(s) | 36, 350, 367, 1056, 2762 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2915, 2949 |
| BciT130I | CCWGG | 5 cut(s) | 25, 545, 903, 2423, 2866 |
| BcnI | CCSGG | 5 cut(s) | 443, 590, 591, 597, 781 |
| BfmI | CTRYAG | 3 cut(s) | 1509, 2499, 2512 |
| BfoI | RGCGCY | 2 cut(s) | 218, 1038 |
| BfuAI | ACCTGC | 1 cut(s) | 1316 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 90 |
| BlpI | GCTNAGC | 2 cut(s) | 266, 785 |
| Bme18I | GGWCC | 6 cut(s) | 244, 586, 593, 899, 1152, 2144 |
| BmeT110I | CYCGRG | 2 cut(s) | 589, 625 |
| BmgT120I | GGNCC | 9 cut(s) | 49, 244, 586, 593, 609, 899, 1152, 1376, 2144 |
| BmiI | GGNNCC | 8 cut(s) | 203, 588, 594, 900, 1241, 1368, 2204, 2538 |
| BmrI | ACTGGG | 1 cut(s) | 1108 |
| BmsI | GCATC | 9 cut(s) | 559, 709, 1347, 1599, 1989, 2287, 2679, 2917, 3180 |
| BmtI | GCTAGC | 2 cut(s) | 1047, 1344 |
| BmuI | ACTGGG | 1 cut(s) | 1108 |
| BoxI | GACNNNNGTC | 1 cut(s) | 591 |
| BpiI | GAAGAC | 6 cut(s) | 451, 954, 1406, 1539, 2362, 2467 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2714, 2746 |
| BpmI | CTGGAG | 7 cut(s) | 188, 239, 353, 395, 2124, 2358, 2659 |
| Bpu10I | CCTNAGC | 3 cut(s) | 230, 863, 2187 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 266, 785 |
| BpuEI | CTTGAG | 2 cut(s) | 1939, 2068 |
| BpuMI | CCSGG | 5 cut(s) | 443, 590, 591, 597, 781 |
| BsaHI | GRCGYC | 1 cut(s) | 1864 |
| BsaI | GGTCTC | 2 cut(s) | 321, 2819 |
| BsaWI | WCCGGW | 6 cut(s) | 40, 477, 583, 1667, 2435, 3196 |
| Bse118I | RCCGGY | 5 cut(s) | 10, 606, 766, 2435, 2914 |
| Bse1I | ACTGG | 5 cut(s) | 205, 1103, 2107, 2585, 2642 |
| Bse3DI | GCAATG | 6 cut(s) | 35, 832, 1270, 2074, 2490, 2816 |
| BseAI | TCCGGA | 4 cut(s) | 40, 477, 583, 1667 |
| BseBI | CCWGG | 5 cut(s) | 25, 545, 903, 2423, 2866 |
| BseGI | GGATG | 9 cut(s) | 550, 1362, 1590, 1861, 2248, 2253, 2645, 2670, 2899 |
| BseMI | GCAATG | 6 cut(s) | 35, 832, 1270, 2074, 2490, 2816 |
| BseNI | ACTGG | 5 cut(s) | 205, 1103, 2107, 2585, 2642 |
| BsePI | GCGCGC | 2 cut(s) | 168, 2607 |
| BseSI | GKGCMC | 1 cut(s) | 178 |
| BseXI | GCAGC | 7 cut(s) | 349, 385, 388, 391, 1120, 2526, 3047 |
| BseYI | CCCAGC | 1 cut(s) | 261 |
| BsgI | GTGCAG | 1 cut(s) | 2609 |
| Bsh1236I | CGCG | 9 cut(s) | 56, 80, 98, 159, 170, 172, 199, 249, 2609 |
| Bsh1285I | CGRYCG | 3 cut(s) | 447, 801, 1086 |
| BshNI | GGYRCC | 2 cut(s) | 1239, 2536 |
| BshTI | ACCGGT | 1 cut(s) | 2435 |
| BsiEI | CGRYCG | 3 cut(s) | 447, 801, 1086 |
| BsiHKAI | GWGCWC | 4 cut(s) | 225, 411, 485, 791 |
| BsiHKCI | CYCGRG | 2 cut(s) | 589, 625 |
| BslFI | GGGAC | 3 cut(s) | 912, 1115, 2404 |
| BsmBI | CGTCTC | 6 cut(s) | 241, 256, 289, 325, 636, 2729 |
| BsmFI | GGGAC | 3 cut(s) | 912, 1115, 2404 |
| BsmI | GAATGC | 5 cut(s) | 2254, 2517, 2609, 2806, 2906 |
| Bso31I | GGTCTC | 2 cut(s) | 321, 2819 |
| BsoBI | CYCGRG | 2 cut(s) | 589, 625 |
| Bsp1286I | GDGCHC | 6 cut(s) | 178, 225, 411, 485, 791, 2014 |
| Bsp13I | TCCGGA | 4 cut(s) | 40, 477, 583, 1667 |
| Bsp143I | GATC | 9 cut(s) | 798, 828, 1119, 1981, 2217, 2227, 2776, 2884, 2955 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 266, 785 |
| Bsp19I | CCATGG | 1 cut(s) | 2455 |
| BspEI | TCCGGA | 4 cut(s) | 40, 477, 583, 1667 |
| BspFNI | CGCG | 9 cut(s) | 56, 80, 98, 159, 170, 172, 199, 249, 2609 |
| BspLI | GGNNCC | 8 cut(s) | 203, 588, 594, 900, 1241, 1368, 2204, 2538 |
| BspMAI | CTGCAG | 1 cut(s) | 2516 |
| BspMI | ACCTGC | 1 cut(s) | 1316 |
| BspOI | GCTAGC | 2 cut(s) | 1047, 1344 |
| BspPI | GGATC | 4 cut(s) | 823, 1976, 2235, 2784 |
| BspQI | GCTCTTC | 1 cut(s) | 1828 |
| BspT107I | GGYRCC | 2 cut(s) | 1239, 2536 |
| BspTNI | GGTCTC | 2 cut(s) | 321, 2819 |
| BsrBI | CCGCTC | 2 cut(s) | 540, 2082 |
| BsrDI | GCAATG | 6 cut(s) | 35, 832, 1270, 2074, 2490, 2816 |
| BsrFI | RCCGGY | 5 cut(s) | 10, 606, 766, 2435, 2914 |
| BsrI | ACTGG | 5 cut(s) | 205, 1103, 2107, 2585, 2642 |
| BssAI | RCCGGY | 5 cut(s) | 10, 606, 766, 2435, 2914 |
| BssHII | GCGCGC | 2 cut(s) | 168, 2607 |
| BssMI | GATC | 9 cut(s) | 798, 828, 1119, 1981, 2217, 2227, 2776, 2884, 2955 |
| BssNI | GRCGYC | 1 cut(s) | 1864 |
| BssT1I | CCWWGG | 2 cut(s) | 1148, 2455 |
| Bst2UI | CCWGG | 5 cut(s) | 25, 545, 903, 2423, 2866 |
| Bst6I | CTCTTC | 5 cut(s) | 1012, 1828, 1894, 2790, 3113 |
| BstACI | GRCGYC | 1 cut(s) | 1864 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1114 |
| BstDSI | CCRYGG | 4 cut(s) | 18, 197, 1012, 2455 |
| BstF5I | GGATG | 9 cut(s) | 550, 1362, 1590, 1861, 2248, 2253, 2645, 2670, 2899 |
| BstFNI | CGCG | 9 cut(s) | 56, 80, 98, 159, 170, 172, 199, 249, 2609 |
| BstH2I | RGCGCY | 2 cut(s) | 218, 1038 |
| BstKTI | GATC | 9 cut(s) | 801, 831, 1122, 1984, 2220, 2230, 2779, 2887, 2958 |
| BstMBI | GATC | 9 cut(s) | 798, 828, 1119, 1981, 2217, 2227, 2776, 2884, 2955 |
| BstMCI | CGRYCG | 3 cut(s) | 447, 801, 1086 |
| BstNI | CCWGG | 5 cut(s) | 25, 545, 903, 2423, 2866 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 591 |
| BstSFI | CTRYAG | 3 cut(s) | 1509, 2499, 2512 |
| BstSLI | GKGCMC | 1 cut(s) | 178 |
| BstUI | CGCG | 9 cut(s) | 56, 80, 98, 159, 170, 172, 199, 249, 2609 |
| BstV1I | GCAGC | 7 cut(s) | 349, 385, 388, 391, 1120, 2526, 3047 |
| BstV2I | GAAGAC | 6 cut(s) | 451, 954, 1406, 1539, 2362, 2467 |
| BstX2I | RGATCY | 2 cut(s) | 2227, 2776 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1162 |
| BstYI | RGATCY | 2 cut(s) | 2227, 2776 |
| BtgI | CCRYGG | 4 cut(s) | 18, 197, 1012, 2455 |
| BtsCI | GGATG | 9 cut(s) | 550, 1362, 1590, 1861, 2248, 2253, 2645, 2670, 2899 |
| BtsI | GCAGTG | 2 cut(s) | 896, 2811 |
| BtsIMutI | CAGTG | 5 cut(s) | 896, 1265, 2592, 2811, 2907 |
| BveI | ACCTGC | 1 cut(s) | 1316 |
| CaiI | CAGNNNCTG | 2 cut(s) | 418, 1114 |
| Cfr10I | RCCGGY | 5 cut(s) | 10, 606, 766, 2435, 2914 |
| Cfr13I | GGNCC | 9 cut(s) | 49, 244, 586, 593, 609, 899, 1152, 1376, 2144 |
| Cfr42I | CCGCGG | 1 cut(s) | 200 |
| Cfr9I | CCCGGG | 1 cut(s) | 589 |
| CseI | GACGC | 2 cut(s) | 223, 238 |
| Csp6I | GTAC | 2 cut(s) | 2706, 3058 |
| CspAI | ACCGGT | 1 cut(s) | 2435 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1494, 1529 |
| CviAII | CATG | 7 cut(s) | 298, 388, 1469, 1587, 1871, 1970, 2456 |
| CviQI | GTAC | 2 cut(s) | 2706, 3058 |
| DpnI | GATC | 9 cut(s) | 800, 830, 1121, 1983, 2219, 2229, 2778, 2886, 2957 |
| DpnII | GATC | 9 cut(s) | 798, 828, 1119, 1981, 2217, 2227, 2776, 2884, 2955 |
| DrdI | GACNNNNNNGTC | 4 cut(s) | 281, 443, 446, 3014 |
| DseDI | GACNNNNNNGTC | 4 cut(s) | 281, 443, 446, 3014 |
| EaeI | YGGCCR | 3 cut(s) | 21, 300, 2582 |
| Eam1104I | CTCTTC | 5 cut(s) | 1012, 1828, 1894, 2790, 3113 |
| EarI | CTCTTC | 5 cut(s) | 1012, 1828, 1894, 2790, 3113 |
| EciI | GGCGGA | 4 cut(s) | 115, 139, 497, 899 |
| Ecl136II | GAGCTC | 4 cut(s) | 223, 409, 483, 789 |
| Eco130I | CCWWGG | 2 cut(s) | 1148, 2455 |
| Eco147I | AGGCCT | 1 cut(s) | 164 |
| Eco24I | GRGCYC | 5 cut(s) | 225, 411, 485, 791, 2014 |
| Eco31I | GGTCTC | 2 cut(s) | 321, 2819 |
| Eco32I | GATATC | 1 cut(s) | 1614 |
| Eco47I | GGWCC | 6 cut(s) | 244, 586, 593, 899, 1152, 2144 |
| Eco53kI | GAGCTC | 4 cut(s) | 223, 409, 483, 789 |
| Eco57I | CTGAAG | 5 cut(s) | 966, 1551, 1557, 2061, 2814 |
| Eco88I | CYCGRG | 2 cut(s) | 589, 625 |
| EcoICRI | GAGCTC | 4 cut(s) | 223, 409, 483, 789 |
| EcoO109I | RGGNCCY | 1 cut(s) | 899 |
| EcoRI | GAATTC | 4 cut(s) | 853, 1426, 2233, 2876 |
| EcoRII | CCWGG | 5 cut(s) | 23, 543, 901, 2421, 2864 |
| EcoRV | GATATC | 1 cut(s) | 1614 |
| EcoT14I | CCWWGG | 2 cut(s) | 1148, 2455 |
| EcoT22I | ATGCAT | 1 cut(s) | 1592 |
| EcoT38I | GRGCYC | 5 cut(s) | 225, 411, 485, 791, 2014 |
| ErhI | CCWWGG | 2 cut(s) | 1148, 2455 |
| Esp3I | CGTCTC | 6 cut(s) | 241, 256, 289, 325, 636, 2729 |
| FaeI | CATG | 7 cut(s) | 301, 391, 1472, 1590, 1874, 1973, 2459 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1292, 1324, 1829, 1861 |
| FaqI | GGGAC | 3 cut(s) | 912, 1115, 2404 |
| FatI | CATG | 7 cut(s) | 297, 387, 1468, 1586, 1870, 1969, 2455 |
| FauI | CCCGC | 6 cut(s) | 185, 285, 463, 545, 1256, 1491 |
| FblI | GTMKAC | 1 cut(s) | 2385 |
| FokI | GGATG | 9 cut(s) | 537, 1369, 1577, 1868, 2255, 2260, 2632, 2657, 2906 |
| FriOI | GRGCYC | 5 cut(s) | 225, 411, 485, 791, 2014 |
| GsaI | CCCAGC | 1 cut(s) | 265 |
| GsuI | CTGGAG | 7 cut(s) | 188, 239, 353, 395, 2124, 2358, 2659 |
| HaeII | RGCGCY | 2 cut(s) | 218, 1038 |
| HgaI | GACGC | 2 cut(s) | 223, 238 |
| Hin1I | GRCGYC | 1 cut(s) | 1864 |
| Hin1II | CATG | 7 cut(s) | 301, 391, 1472, 1590, 1874, 1973, 2459 |
| HincII | GTYRAC | 4 cut(s) | 747, 990, 1868, 2763 |
| HindII | GTYRAC | 4 cut(s) | 747, 990, 1868, 2763 |
| HindIII | AAGCTT | 2 cut(s) | 1214, 2975 |
| HpaI | GTTAAC | 1 cut(s) | 747 |
| HphI | GGTGA | 8 cut(s) | 186, 512, 971, 979, 1001, 1469, 2872, 3186 |
| Hpy166II | GTNNAC | 8 cut(s) | 747, 822, 990, 1868, 2093, 2386, 2744, 2763 |
| Hpy8I | GTNNAC | 8 cut(s) | 747, 822, 990, 1868, 2093, 2386, 2744, 2763 |
| Hpy99I | CGWCG | 6 cut(s) | 65, 80, 275, 440, 606, 1091 |
| HpyCH4IV | ACGT | 1 cut(s) | 1864 |
| HpySE526I | ACGT | 1 cut(s) | 1864 |
| Hsp92I | GRCGYC | 1 cut(s) | 1864 |
| Hsp92II | CATG | 7 cut(s) | 301, 391, 1472, 1590, 1874, 1973, 2459 |
| Kpn2I | TCCGGA | 4 cut(s) | 40, 477, 583, 1667 |
| KroI | GCCGGC | 1 cut(s) | 606 |
| KroNI | GCCGGC | 1 cut(s) | 608 |
| KspAI | GTTAAC | 1 cut(s) | 747 |
| KspI | CCGCGG | 1 cut(s) | 200 |
| Kzo9I | GATC | 9 cut(s) | 798, 828, 1119, 1981, 2217, 2227, 2776, 2884, 2955 |
| LguI | GCTCTTC | 1 cut(s) | 1828 |
| Lsp1109I | GCAGC | 7 cut(s) | 349, 385, 388, 391, 1120, 2526, 3047 |
| LweI | GCATC | 9 cut(s) | 559, 709, 1347, 1599, 1989, 2287, 2679, 2917, 3180 |
| MaeII | ACGT | 1 cut(s) | 1864 |
| MaeIII | GTNAC | 3 cut(s) | 959, 1435, 1792 |
| MalI | GATC | 9 cut(s) | 800, 830, 1121, 1983, 2219, 2229, 2778, 2886, 2957 |
| MbiI | CCGCTC | 2 cut(s) | 540, 2082 |
| MboI | GATC | 9 cut(s) | 798, 828, 1119, 1981, 2217, 2227, 2776, 2884, 2955 |
| MfeI | CAATTG | 1 cut(s) | 2213 |
| MflI | RGATCY | 2 cut(s) | 2227, 2776 |
| MhlI | GDGCHC | 6 cut(s) | 178, 225, 411, 485, 791, 2014 |
| MlsI | TGGCCA | 1 cut(s) | 2584 |
| MluNI | TGGCCA | 1 cut(s) | 2584 |
| MlyI | GAGTC | 6 cut(s) | 944, 956, 1029, 1175, 1532, 3197 |
| MmeI | TCCRAC | 7 cut(s) | 635, 1106, 1371, 1529, 1799, 2122, 2568 |
| Mox20I | TGGCCA | 1 cut(s) | 2584 |
| Mph1103I | ATGCAT | 1 cut(s) | 1592 |
| MroI | TCCGGA | 4 cut(s) | 40, 477, 583, 1667 |
| MroNI | GCCGGC | 1 cut(s) | 606 |
| MscI | TGGCCA | 1 cut(s) | 2584 |
| MseI | TTAA | 7 cut(s) | 35, 399, 746, 1223, 1719, 1847, 3156 |
| Msp20I | TGGCCA | 1 cut(s) | 2584 |
| MspA1I | CMGCKG | 3 cut(s) | 199, 265, 2792 |
| MunI | CAATTG | 1 cut(s) | 2213 |
| Mva1269I | GAATGC | 5 cut(s) | 2254, 2517, 2609, 2806, 2906 |
| MvaI | CCWGG | 5 cut(s) | 25, 545, 903, 2423, 2866 |
| MvnI | CGCG | 9 cut(s) | 56, 80, 98, 159, 170, 172, 199, 249, 2609 |
| NaeI | GCCGGC | 1 cut(s) | 608 |
| NciI | CCSGG | 5 cut(s) | 443, 590, 591, 597, 781 |
| NcoI | CCATGG | 1 cut(s) | 2455 |
| NdeII | GATC | 9 cut(s) | 798, 828, 1119, 1981, 2217, 2227, 2776, 2884, 2955 |
| NgoMIV | GCCGGC | 1 cut(s) | 606 |
| NheI | GCTAGC | 2 cut(s) | 1043, 1340 |
| NlaIII | CATG | 7 cut(s) | 301, 391, 1472, 1590, 1874, 1973, 2459 |
| NlaIV | GGNNCC | 8 cut(s) | 203, 588, 594, 900, 1241, 1368, 2204, 2538 |
| NmuCI | GTSAC | 2 cut(s) | 959, 1792 |
| NsiI | ATGCAT | 1 cut(s) | 1592 |
| PasI | CCCWGGG | 1 cut(s) | 544 |
| PauI | GCGCGC | 2 cut(s) | 168, 2607 |
| PceI | AGGCCT | 1 cut(s) | 164 |
| PciSI | GCTCTTC | 1 cut(s) | 1828 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 60, 279, 444 |
| PctI | GAATGC | 5 cut(s) | 2254, 2517, 2609, 2806, 2906 |
| PdiI | GCCGGC | 1 cut(s) | 608 |
| PfeI | GAWTC | 6 cut(s) | 421, 1139, 1472, 1706, 2450, 2562 |
| PflFI | GACNNNGTC | 2 cut(s) | 248, 443 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1184, 2865 |
| PinAI | ACCGGT | 1 cut(s) | 2435 |
| Ple19I | CGATCG | 1 cut(s) | 801 |
| PleI | GAGTC | 6 cut(s) | 944, 956, 1028, 1174, 1531, 3196 |
| PpsI | GAGTC | 6 cut(s) | 944, 956, 1028, 1174, 1531, 3196 |
| PpuMI | RGGWCCY | 1 cut(s) | 899 |
| PshAI | GACNNNNGTC | 1 cut(s) | 591 |
| Psp124BI | GAGCTC | 4 cut(s) | 225, 411, 485, 791 |
| Psp5II | RGGWCCY | 1 cut(s) | 899 |
| Psp6I | CCWGG | 5 cut(s) | 23, 543, 901, 2421, 2864 |
| PspFI | CCCAGC | 1 cut(s) | 261 |
| PspGI | CCWGG | 5 cut(s) | 23, 543, 901, 2421, 2864 |
| PspN4I | GGNNCC | 8 cut(s) | 203, 588, 594, 900, 1241, 1368, 2204, 2538 |
| PspPI | GGNCC | 9 cut(s) | 49, 244, 586, 593, 609, 899, 1152, 1376, 2144 |
| PspPPI | RGGWCCY | 1 cut(s) | 899 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1278, 1310 |
| PstI | CTGCAG | 1 cut(s) | 2516 |
| PstNI | CAGNNNCTG | 2 cut(s) | 418, 1114 |
| PsuI | RGATCY | 2 cut(s) | 2227, 2776 |
| PsyI | GACNNNGTC | 2 cut(s) | 248, 443 |
| PteI | GCGCGC | 2 cut(s) | 168, 2607 |
| PvuI | CGATCG | 1 cut(s) | 801 |
| PvuII | CAGCTG | 2 cut(s) | 265, 2792 |
| RsaI | GTAC | 2 cut(s) | 2707, 3059 |
| RsaNI | GTAC | 2 cut(s) | 2706, 3058 |
| SacI | GAGCTC | 4 cut(s) | 225, 411, 485, 791 |
| SacII | CCGCGG | 1 cut(s) | 200 |
| SapI | GCTCTTC | 1 cut(s) | 1828 |
| SaqAI | TTAA | 7 cut(s) | 35, 399, 746, 1223, 1719, 1847, 3156 |
| Sau3AI | GATC | 9 cut(s) | 798, 828, 1119, 1981, 2217, 2227, 2776, 2884, 2955 |
| Sau96I | GGNCC | 9 cut(s) | 49, 244, 586, 593, 609, 899, 1152, 1376, 2144 |
| SchI | GAGTC | 6 cut(s) | 944, 956, 1029, 1175, 1532, 3197 |
| SduI | GDGCHC | 6 cut(s) | 178, 225, 411, 485, 791, 2014 |
| SfaNI | GCATC | 9 cut(s) | 559, 709, 1347, 1599, 1989, 2287, 2679, 2917, 3180 |
| SfcI | CTRYAG | 3 cut(s) | 1509, 2499, 2512 |
| Sfr303I | CCGCGG | 1 cut(s) | 200 |
| SgrBI | CCGCGG | 1 cut(s) | 200 |
| SinI | GGWCC | 6 cut(s) | 244, 586, 593, 899, 1152, 2144 |
| SmaI | CCCGGG | 1 cut(s) | 591 |
| SmlI | CTYRAG | 2 cut(s) | 1954, 2083 |
| SmoI | CTYRAG | 2 cut(s) | 1954, 2083 |
| SseBI | AGGCCT | 1 cut(s) | 164 |
| SspI | AATATT | 2 cut(s) | 919, 1567 |
| SstI | GAGCTC | 4 cut(s) | 225, 411, 485, 791 |
| StuI | AGGCCT | 1 cut(s) | 164 |
| StyI | CCWWGG | 2 cut(s) | 1148, 2455 |
| TaiI | ACGT | 1 cut(s) | 1867 |
| TatI | WGTACW | 1 cut(s) | 3057 |
| TauI | GCSGC | 6 cut(s) | 50, 188, 202, 305, 2082, 3041 |
| TfiI | GAWTC | 6 cut(s) | 421, 1139, 1472, 1706, 2450, 2562 |
| Tru1I | TTAA | 7 cut(s) | 35, 399, 746, 1223, 1719, 1847, 3156 |
| Tru9I | TTAA | 7 cut(s) | 35, 399, 746, 1223, 1719, 1847, 3156 |
| TscAI | CASTG | 5 cut(s) | 896, 1265, 2592, 2811, 2907 |
| TseFI | GTSAC | 2 cut(s) | 959, 1792 |
| TseI | GCWGC | 7 cut(s) | 337, 373, 376, 379, 1108, 2514, 3035 |
| Tsp45I | GTSAC | 2 cut(s) | 959, 1792 |
| TspGWI | ACGGA | 3 cut(s) | 64, 654, 2353 |
| TspMI | CCCGGG | 1 cut(s) | 589 |
| TspRI | CASTG | 5 cut(s) | 896, 1265, 2592, 2811, 2907 |
| Tth111I | GACNNNGTC | 2 cut(s) | 248, 443 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1184, 2865 |
| VpaK11BI | GGWCC | 6 cut(s) | 244, 586, 593, 899, 1152, 2144 |
| XapI | RAATTY | 7 cut(s) | 853, 1426, 1582, 1815, 2233, 2441, 2876 |
| XbaI | TCTAGA | 1 cut(s) | 2719 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2978 |
| XmaI | CCCGGG | 1 cut(s) | 589 |
| XmiI | GTMKAC | 1 cut(s) | 2385 |
| ZraI | GACGTC | 1 cut(s) | 1865 |
| Zsp2I | ATGCAT | 1 cut(s) | 1592 |