Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004145

Physical Location & Seq

Genomic Coordinates Forward (+)

16877144 .. 16879214

Gene Structure 2071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGTCTCCTGCGATCAAAGCACCGCTCTTACCAAACCAAGAGCCTTCATCATCATCATCGGAGAACCATGGATCATTCGCCGGAGCTGTGTTTAACATCTCGACAAGCATCGTCGGAGCTGGAATTATGGCGATTCCGGCGGCTTTCAAAGTCCTAGGTGTAATCCCATCTCTATCGATAATCGTAATCATAGCTTGGCTCTCCAATGTATCAGCTGGGTTTTTAATGAAATCCAGTCTCGCCGGAGAATCAACAACTTACGCCGGCGTGATGAAGGAATCGTTCGGAAAATCTGGTGCCGTTGCTGTTACGGTTGTTACAATGGTTGTGACTTTTGGGTCTATGATTATTTTCTCGATTATCATTGGTGATGTTATTTCGGGTAATGAGAAAGATGGAATCATACATTTAGGTCTTCTTCAAGAATGGTTTGGTTCTCATTGGTGGAATACGAGATTCTTTGGTTTGTTGTTCATCTTTGTCTTCCTCTTCCTTCCTTTAGTCTTATGCAGACGTGTAGAAAGATTGGCATTTAGTTCTGCAATTTCGTTTCTGCTTGCGTTACTCTTTGTTGTCATAAGCTCGGTGTTAGCGATTATTGCTCTCGTGCAAGGGAAGACAAAGCCTCCGAGACTCTTCCCTGAACTCAATGATGGTGGATTATCGTTTTTCAGTCTCTTCACTGCTTCCCCTGTCATTGTAACAGCCTTCACCTTTCATTTCAATGTCCATCCAGTAGCATTCGAACTCAAAGATCCATTAAATGTGCTTTCAGCAACAAGGATCTCTGTGATTCTGTGTGCTACGATCTACTCAGCTACTGGTCTCTTTTGTTACCTTCTGTTTGGGGATTCCACTATGACAGATGTTCTAATGAACTTTGATCAAAGCACCAGTTCTTCGGTTGGTTCATTACTAAATGATATTGTTAGACTCAGCTACGCGATTCACCTCATGCTCGTGTTTCCTCTGCTCAACTTCTCGCTTAGAGCCAACCTCGACGAACTCTTGTTCCCTATGAAGCTTTCTTTAGTGGAAGACAACAAAAGATTCTTCGCACTCACTTTTCCATTACTGATATCTTGTTTCTTGGGTGCAATTGCCATACCAGACATTTGGTACTTCTTTCAGTTCTTGGGATCAACTTCTACAGTCTCTATAGCATTCATCTTTCCAGCTGCAATTGTCCTACGGAATGTAAATGGTTTCTCGACTTTAAGAGAGAAGATTGTAGCTTCAGTAATGCTTGTTCTTGCTGTTGCCACAAGTATCATCGCTATTTCGACAAATATATACACTTTCACAGCAACAGAAGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

440

Amino Acids

47.67

Weight (kDa)

6.31

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	24 - 424	2.5e-44	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40420 AT3G56200
fragaria_vesca	FvH4_7g25490 FvH4_7g25490 FvH4_7g25500
malus_domestica	MD01G1161200.v1.1 MD01G1161300.v1.1 MD06G1044000.v1.1 MD07G1229200.v1.1
prunus_persica	Prupe.2G259300_v2.0.a1 Prupe.2G259400_v2.0.a1
pyrus_communis	pycom01g17700 pycom01g17710 pycom07g20740
rosa_chinensis	RchiOBHm_Chr1g0371451 RchiOBHm_Chr1g0371471
rosa_laevigata	RLG00000026959 RLG00000026960
rosa_multiflora	Rmu_sc0000809.1_g000020 Rmu_sc0000809.1_g000021 Rmu_sc0029071.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285660 Rroxscaffold_4G00285670
rosa_rugosa	Rorug01G0364100 Rorug01G0364100
rosa_samantha	Rh1AG374300 Rh1AG374400 Rh1BG337800 Rh1CG351000 Rh1CG351100 Rh1DG368800
rosa_wichuraiana	Rw1G032920 Rw1G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	337
AccB1I	GGYRCC	1 cut(s)	296
AccBSI	CCGCTC	1 cut(s)	25
AccII	CGCG	1 cut(s)	944
AciI	CCGC	2 cut(s)	23, 140
AclWI	GGATC	4 cut(s)	79, 749, 791, 1147
AcuI	CTGAAG	1 cut(s)	1221
AfaI	GTAC	1 cut(s)	1121
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	3 cut(s)	148, 422, 724
AjiI	CACGTC	1 cut(s)	515
AloI	GAACNNNNNNTCC	2 cut(s)	996, 1028
Alw26I	GTCTC	6 cut(s)	9, 242, 625, 680, 830, 1159
AlwI	GGATC	4 cut(s)	79, 749, 791, 1147
AlwNI	CAGNNNCTG	1 cut(s)	821
ApeKI	GCWGC	1 cut(s)	1178
AspA2I	CCTAGG	1 cut(s)	154
AsuHPI	GGTGA	3 cut(s)	380, 703, 941
AsuII	TTCGAA	1 cut(s)	744
AvrII	CCTAGG	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	296
BauI	CACGAG	2 cut(s)	605, 959
BbsI	GAAGAC	4 cut(s)	407, 475, 623, 1044
BbvI	GCAGC	1 cut(s)	1165
BccI	CCATC	4 cut(s)	175, 389, 647, 738
BceAI	ACGGC	1 cut(s)	284
BclI	TGATCA	1 cut(s)	883
BcoDI	GTCTC	6 cut(s)	9, 242, 625, 680, 830, 1159
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	2 cut(s)	1149, 1158
BisI	GCNGC	2 cut(s)	141, 1179
BlnI	CCTAGG	1 cut(s)	154
BlsI	GCNGC	2 cut(s)	142, 1180
BmgBI	CACGTC	1 cut(s)	515
BmiI	GGNNCC	1 cut(s)	298
BmsI	GCATC	1 cut(s)	117
BpiI	GAAGAC	4 cut(s)	407, 475, 623, 1044
BplI	GAGNNNNNCTC	2 cut(s)	981, 1013
Bpu14I	TTCGAA	1 cut(s)	744
Bsa29I	ATCGAT	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	830
BsaJI	CCNNGG	2 cut(s)	67, 154
BsaXI	ACNNNNNCTCC	2 cut(s)	610, 640
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	4 cut(s)	234, 734, 826, 894
BseCI	ATCGAT	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	67, 154
BseGI	GGATG	1 cut(s)	730
BseMII	CTCAG	2 cut(s)	828, 949
BseNI	ACTGG	4 cut(s)	234, 734, 826, 894
BseXI	GCAGC	1 cut(s)	1165
BseYI	CCCAGC	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	944
BshNI	GGYRCC	1 cut(s)	296
BshVI	ATCGAT	1 cut(s)	176
BsiSI	CCGG	4 cut(s)	81, 137, 243, 264
BsmAI	GTCTC	6 cut(s)	9, 242, 625, 680, 830, 1159
BsmI	GAATGC	2 cut(s)	740, 1163
Bso31I	GGTCTC	1 cut(s)	830
Bsp119I	TTCGAA	1 cut(s)	744
Bsp143I	GATC	7 cut(s)	12, 71, 754, 783, 807, 883, 1139
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	2 cut(s)	23, 140
BspCNI	CTCAG	2 cut(s)	827, 948
BspDI	ATCGAT	1 cut(s)	176
BspFNI	CGCG	1 cut(s)	944
BspLI	GGNNCC	1 cut(s)	298
BspPI	GGATC	4 cut(s)	79, 749, 791, 1147
BspT104I	TTCGAA	1 cut(s)	744
BspT107I	GGYRCC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	830
BsrBI	CCGCTC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	4 cut(s)	234, 734, 826, 894
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	67, 154
BssMI	GATC	7 cut(s)	12, 71, 754, 783, 807, 883, 1139
BssSI	CACGAG	2 cut(s)	605, 959
BssT1I	CCWWGG	2 cut(s)	67, 154
Bst2BI	CACGAG	2 cut(s)	605, 959
Bst4CI	ACNGT	2 cut(s)	313, 1153
Bst6I	CTCTTC	3 cut(s)	494, 641, 683
BstBI	TTCGAA	1 cut(s)	744
BstC8I	GCNNGC	2 cut(s)	265, 558
BstDEI	CTNAG	3 cut(s)	814, 935, 986
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	730
BstFNI	CGCG	1 cut(s)	944
BstKTI	GATC	7 cut(s)	15, 74, 757, 786, 810, 886, 1142
BstMAI	GTCTC	6 cut(s)	9, 242, 625, 680, 830, 1159
BstMBI	GATC	7 cut(s)	12, 71, 754, 783, 807, 883, 1139
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 137, 599
BstSFI	CTRYAG	2 cut(s)	1149, 1158
BstUI	CGCG	1 cut(s)	944
BstV1I	GCAGC	1 cut(s)	1165
BstV2I	GAAGAC	4 cut(s)	407, 475, 623, 1044
BstX2I	RGATCY	2 cut(s)	754, 783
BstXI	CCANNNNNNTGG	1 cut(s)	1116
BstYI	RGATCY	2 cut(s)	754, 783
Bsu15I	ATCGAT	1 cut(s)	176
BsuTUI	ATCGAT	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	1258
BtrI	CACGTC	1 cut(s)	515
BtsCI	GGATG	1 cut(s)	730
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	1 cut(s)	681
Cac8I	GCNNGC	2 cut(s)	265, 558
CaiI	CAGNNNCTG	1 cut(s)	821
Cfr10I	RCCGGY	1 cut(s)	263
ClaI	ATCGAT	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	1120
CspCI	CAANNNNNGTGG	2 cut(s)	637, 672
CviAII	CATG	3 cut(s)	68, 955, 1320
CviQI	GTAC	1 cut(s)	1120
DdeI	CTNAG	3 cut(s)	814, 935, 986
DpnI	GATC	7 cut(s)	14, 73, 756, 785, 809, 885, 1141
DpnII	GATC	7 cut(s)	12, 71, 754, 783, 807, 883, 1139
DrdI	GACNNNNNNGTC	1 cut(s)	337
DseDI	GACNNNNNNGTC	1 cut(s)	337
Eam1104I	CTCTTC	3 cut(s)	494, 641, 683
EarI	CTCTTC	3 cut(s)	494, 641, 683
Eco130I	CCWWGG	2 cut(s)	67, 154
Eco31I	GGTCTC	1 cut(s)	830
Eco32I	GATATC	1 cut(s)	1080
Eco57I	CTGAAG	1 cut(s)	1221
EcoRV	GATATC	1 cut(s)	1080
EcoT14I	CCWWGG	2 cut(s)	67, 154
ErhI	CCWWGG	2 cut(s)	67, 154
FaeI	CATG	3 cut(s)	71, 958, 1323
FatI	CATG	3 cut(s)	67, 954, 1319
FbaI	TGATCA	1 cut(s)	883
Fnu4HI	GCNGC	2 cut(s)	141, 1179
FokI	GGATG	1 cut(s)	717
Fsp4HI	GCNGC	2 cut(s)	141, 1179
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	2 cut(s)	141, 1179
GsaI	CCCAGC	1 cut(s)	219
HapII	CCGG	4 cut(s)	81, 137, 243, 264
Hin1II	CATG	3 cut(s)	71, 958, 1323
HindIII	AAGCTT	1 cut(s)	1022
HpaII	CCGG	4 cut(s)	81, 137, 243, 264
HphI	GGTGA	3 cut(s)	380, 703, 941
Hpy188I	TCNGA	4 cut(s)	61, 116, 287, 630
Hpy188III	TCNNGA	4 cut(s)	100, 355, 422, 1210
Hpy99I	CGWCG	2 cut(s)	116, 1004
HpyAV	CCTTC	5 cut(s)	54, 268, 503, 718, 848
HpyCH4III	ACNGT	2 cut(s)	313, 1153
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	5 cut(s)	510, 542, 610, 1097, 1181
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 137, 599
HpyF3I	CTNAG	3 cut(s)	814, 935, 986
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	3 cut(s)	71, 958, 1323
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	883
Kzo9I	GATC	7 cut(s)	12, 71, 754, 783, 807, 883, 1139
LmnI	GCTCC	2 cut(s)	83, 116
Lsp1109I	GCAGC	1 cut(s)	1165
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	6 cut(s)	307, 316, 328, 561, 700, 833
MalI	GATC	7 cut(s)	14, 73, 756, 785, 809, 885, 1141
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	7 cut(s)	12, 71, 754, 783, 807, 883, 1139
MfeI	CAATTG	2 cut(s)	1098, 1182
MflI	RGATCY	2 cut(s)	754, 783
MluCI	AATT	4 cut(s)	123, 543, 1098, 1182
MlyI	GAGTC	2 cut(s)	627, 927
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	5 cut(s)	497, 636, 962, 978, 1007
MreI	CGCCGGCG	1 cut(s)	263
MroNI	GCCGGC	1 cut(s)	263
MseI	TTAA	4 cut(s)	93, 224, 761, 1217
MslI	CAYNNNNRTG	2 cut(s)	723, 959
MspA1I	CMGCKG	2 cut(s)	215, 1178
MspI	CCGG	4 cut(s)	81, 137, 243, 264
MunI	CAATTG	2 cut(s)	1098, 1182
Mva1269I	GAATGC	2 cut(s)	740, 1163
MvnI	CGCG	1 cut(s)	944
MwoI	GCNNNNNNNGC	3 cut(s)	17, 137, 599
NaeI	GCCGGC	1 cut(s)	265
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	7 cut(s)	12, 71, 754, 783, 807, 883, 1139
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	3 cut(s)	71, 958, 1323
NlaIV	GGNNCC	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	328
NspV	TTCGAA	1 cut(s)	744
PcsI	WCGNNNNNNNCGW	1 cut(s)	590
PctI	GAATGC	2 cut(s)	740, 1163
PdiI	GCCGGC	1 cut(s)	265
PfeI	GAWTC	9 cut(s)	133, 248, 278, 399, 456, 793, 851, 946, 1050
PkrI	GCNGC	2 cut(s)	142, 1180
PleI	GAGTC	2 cut(s)	627, 927
PpsI	GAGTC	2 cut(s)	627, 927
PspFI	CCCAGC	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	298
PsrI	GAACNNNNNNTAC	2 cut(s)	1233, 1265
PstNI	CAGNNNCTG	1 cut(s)	821
PsuI	RGATCY	2 cut(s)	754, 783
PvuII	CAGCTG	2 cut(s)	215, 1178
RsaI	GTAC	1 cut(s)	1121
RsaNI	GTAC	1 cut(s)	1120
RseI	CAYNNNNRTG	2 cut(s)	723, 959
SaqAI	TTAA	4 cut(s)	93, 224, 761, 1217
SatI	GCNGC	2 cut(s)	141, 1179
Sau3AI	GATC	7 cut(s)	12, 71, 754, 783, 807, 883, 1139
SchI	GAGTC	2 cut(s)	627, 927
SfaNI	GCATC	1 cut(s)	117
SfcI	CTRYAG	2 cut(s)	1149, 1158
SfuI	TTCGAA	1 cut(s)	744
SgrAI	CRCCGGYG	1 cut(s)	263
SmiMI	CAYNNNNRTG	2 cut(s)	723, 959
Sse9I	AATT	4 cut(s)	123, 543, 1098, 1182
SsiI	CCGC	2 cut(s)	23, 140
SspMI	CTAG	1 cut(s)	155
StyI	CCWWGG	2 cut(s)	67, 154
TaaI	ACNGT	2 cut(s)	313, 1153
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	7 cut(s)	101, 176, 356, 744, 999, 1211, 1283
TasI	AATT	4 cut(s)	123, 543, 1098, 1182
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	9 cut(s)	133, 248, 278, 399, 456, 793, 851, 946, 1050
Tru1I	TTAA	4 cut(s)	93, 224, 761, 1217
Tru9I	TTAA	4 cut(s)	93, 224, 761, 1217
TscAI	CASTG	1 cut(s)	688
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	1 cut(s)	1178
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	9 cut(s)	36, 242, 287, 463, 707, 890, 900, 1034, 1156
TspGWI	ACGGA	1 cut(s)	1207
TspRI	CASTG	1 cut(s)	688
XmaJI	CCTAGG	1 cut(s)	154
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.