pycom01g17710

sodium-coupled neutral amino acid transporter

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
16884988 .. 16887640
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g17710.1

Sequence Viewer

Length: 1371 bp
ATGTACAAAAAGACAACATACCCCAAAACACTCTCTCTAGCAGAAAACCGAGCAGCCATCGGAATGTCGCCGGCAGCCGGAGCTCACGTCCCACTTCTGTCGGACAGAAAGCCGGTGAGGCGGGGGTCGGTGTCTGGGGCGGTGTTCAACGTGTCCACGAGCATAATTGGAGCCGGAATTATGTCCATACCAGCAACTCTCAAGGTGCTTGGTGTGATACCGGGTTTTGTGCTTATTGTGATCATTGCTTTGCTGGCCGACGTCTCGGTGGAGTTCCTGATGAGGTTCACGCATTCCGGCGAATCCACGACGTATTCCGGCGTTATGAGGGAGTCTTTTGGGCAGGTGGGATCGGTTGCCACGCAAATATGTGTCATGATTACTAATCTTGGGTGCTTAATTATGTACCAGATTATAATTGGGGATGTTCTATCTGGAAATGGGTCTGCAGGAGAAGGACATTCAGGAGTCCTGCAAGAGTGGTTTGGAAGTCGTTGGTGGAACTCCCGTGATATTGCCCTCCTATTCACACTTATTTTCATTTTCCTGCCATTGGTTTTGTTAAAGCGAGTAGAATCTCTGAGGTTCAGTTCGGCCATATCAGTTCTTCTTGCTGTGGTTTTTGTTGGCATAAGTTCAGCCATGGCAATCTGTGCAATCTTTGAAGGGAAAACCAACACCCCAAGATTGGTACCAAGCTTGGGCAAACAAACCTCCTTCTTTGACCTTTTCACTGCTGTCCCAGTCATTGTCACGGCCTTCACTTTTCACTTCAATGTGCACCCAATTGGGTTTGAGCTTGGGAAGCCGTCGGATATGATATCAGCGGTCAGGATCTCACTAGTGCTATGTGCAGCCATCTACTTCTCCATTGGATTGTTTGGGTACCTGTTGTTTGGGGATGCAATTATGGCTGACATACTTGTGAACTTTGACAGAAGCTCGGATTCAGCAATGGGGGCAGTGCTCAATGATGTGGTCAGATTAAGCTATGCCCTCCATCTGATGTTGGTTTTTCCTCTCTTGAACTTTTCTCTGAGGGTAAATTTGGATGAACTGCTTTTCCCCAAAAAGCCGCTTTTGACCACAGATACTAGGAGATTTCTGCTTCTCACTCTTGGCCAGCTGGTTTTCTCTTACCTGGCTGCAATTGCCTTCCCAGACATTTGGTACGTTTTTCAGTTTTTGGGATCAACTTCTGCTGTCTGCCTTGCCTTCATTTTCCCGGGTGCAATTGTTCTAAGGGATGTACATGGCATATCTACAAGAAGGGACAGGATCATGGCAACTGTAATGGTAGTCCTGGCAGTAGTAACAAGTGCGACTGCCATTTCCACCAATGTATTTAACTTTTTTGGGAACAAGTCCTAA

Protein Analysis

457

Amino Acids

49.42

Weight (kDa)

9.2

Isoelectric Point (pI)

26.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 41 - 432 1.1e-48 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 43 - 443 2.9e-07 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 416
AarI CACCTGC 1 cut(s) 334
AatII GACGTC 1 cut(s) 264
Acc36I ACCTGC 1 cut(s) 334
Acc65I GGTACC 2 cut(s) 691, 885
AccB1I GGYRCC 2 cut(s) 691, 885
AciI CCGC 4 cut(s) 121, 140, 827, 1076
AclWI GGATC 4 cut(s) 358, 842, 1198, 1286
AcoI YGGCCR 3 cut(s) 255, 594, 1120
AcsI RAATTY 1 cut(s) 1045
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 6 cut(s) 5, 407, 693, 887, 1172, 1251
AfiI CCNNNNNNNGG 4 cut(s) 77, 553, 688, 701
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 4 cut(s) 148, 665, 775, 1027
AhlI ACTAGT 1 cut(s) 841
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 2 cut(s) 1140, 1302
AloI GAACNNNNNNTCC 2 cut(s) 1047, 1079
AluBI AGCT 6 cut(s) 83, 699, 799, 942, 990, 1126
AluI AGCT 6 cut(s) 83, 699, 799, 942, 990, 1126
Alw21I GWGCWC 3 cut(s) 85, 783, 969
Alw26I GTCTC 1 cut(s) 268
Alw44I GTGCAC 1 cut(s) 779
AlwI GGATC 4 cut(s) 358, 842, 1198, 1286
Ama87I CYCGRG 1 cut(s) 1225
AoxI GGCC 4 cut(s) 255, 594, 756, 1120
ApaLI GTGCAC 1 cut(s) 779
ApeKI GCWGC 4 cut(s) 53, 74, 854, 1145
ApoI RAATTY 1 cut(s) 1045
Asp718I GGTACC 2 cut(s) 691, 885
AsuC2I CCSGG 3 cut(s) 222, 1226, 1227
AsuHPI GGTGA 1 cut(s) 127
AvaI CYCGRG 1 cut(s) 1225
BaeGI GKGCMC 1 cut(s) 783
BalI TGGCCA 1 cut(s) 1122
BanI GGYRCC 2 cut(s) 691, 885
BanII GRGCYC 1 cut(s) 85
BauI CACGAG 1 cut(s) 157
Bbv12I GWGCWC 3 cut(s) 85, 783, 969
BbvI GCAGC 4 cut(s) 65, 86, 866, 1132
BccI CCATC 3 cut(s) 65, 866, 1008
BceAI ACGGC 2 cut(s) 771, 793
BciT130I CCWGG 2 cut(s) 1142, 1304
BclI TGATCA 1 cut(s) 240
BcnI CCSGG 3 cut(s) 222, 1226, 1227
BcoDI GTCTC 1 cut(s) 268
BcuI ACTAGT 1 cut(s) 841
BfaI CTAG 3 cut(s) 38, 842, 1095
BfmI CTRYAG 1 cut(s) 447
BfuAI ACCTGC 1 cut(s) 334
BglI GCCNNNNNGGC 1 cut(s) 118
BisI GCNGC 5 cut(s) 54, 75, 855, 1076, 1146
BlsI GCNGC 5 cut(s) 55, 76, 856, 1077, 1147
Bme1390I CCNGG 5 cut(s) 222, 1142, 1226, 1227, 1304
BmeT110I CYCGRG 1 cut(s) 1225
BmgBI CACGTC 1 cut(s) 88
BmiI GGNNCC 3 cut(s) 172, 693, 887
BmrFI CCNGG 5 cut(s) 222, 1142, 1226, 1227, 1304
BmrI ACTGGG 1 cut(s) 737
BmsI GCATC 1 cut(s) 892
BmuI ACTGGG 1 cut(s) 737
BpuEI CTTGAG 1 cut(s) 185
BpuMI CCSGG 3 cut(s) 222, 1226, 1227
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 642, 1225
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 553, 688, 701
Bse118I RCCGGY 2 cut(s) 70, 112
Bse1I ACTGG 1 cut(s) 743
Bse3DI GCAATG 2 cut(s) 243, 960
BseBI CCWGG 2 cut(s) 1142, 1304
BseDI CCNNGG 2 cut(s) 642, 1225
BseGI GGATG 4 cut(s) 430, 907, 1057, 1252
BseLI CCNNNNNNNGG 4 cut(s) 77, 553, 688, 701
BseMI GCAATG 2 cut(s) 243, 960
BseMII CTCAG 2 cut(s) 572, 1028
BseNI ACTGG 1 cut(s) 743
BseSI GKGCMC 1 cut(s) 783
BseXI GCAGC 4 cut(s) 65, 86, 866, 1132
BsgI GTGCAG 1 cut(s) 873
BshFI GGCC 4 cut(s) 257, 596, 758, 1122
BshNI GGYRCC 2 cut(s) 691, 885
BsiHKAI GWGCWC 3 cut(s) 85, 783, 969
BsiHKCI CYCGRG 1 cut(s) 1225
BsiSI CCGG 8 cut(s) 71, 78, 113, 174, 221, 297, 318, 1226
BslFI GGGAC 3 cut(s) 74, 725, 1286
BslI CCNNNNNNNGG 4 cut(s) 77, 553, 688, 701
BsmAI GTCTC 1 cut(s) 268
BsmBI CGTCTC 1 cut(s) 268
BsmFI GGGAC 3 cut(s) 74, 725, 1286
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 4 cut(s) 257, 596, 758, 1122
BsoBI CYCGRG 1 cut(s) 1225
Bsp1286I GDGCHC 3 cut(s) 85, 783, 969
Bsp1407I TGTACA 2 cut(s) 3, 1249
Bsp143I GATC 5 cut(s) 240, 350, 834, 1190, 1278
Bsp19I CCATGG 1 cut(s) 642
BspACI CCGC 4 cut(s) 121, 140, 827, 1076
BspANI GGCC 4 cut(s) 257, 596, 758, 1122
BspCNI CTCAG 2 cut(s) 573, 1029
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 3 cut(s) 172, 693, 887
BspMAI CTGCAG 1 cut(s) 451
BspMI ACCTGC 1 cut(s) 334
BspPI GGATC 4 cut(s) 358, 842, 1198, 1286
BspT107I GGYRCC 2 cut(s) 691, 885
BsrDI GCAATG 2 cut(s) 243, 960
BsrFI RCCGGY 2 cut(s) 70, 112
BsrGI TGTACA 2 cut(s) 3, 1249
BsrI ACTGG 1 cut(s) 743
BssAI RCCGGY 2 cut(s) 70, 112
BssECI CCNNGG 2 cut(s) 642, 1225
BssMI GATC 5 cut(s) 240, 350, 834, 1190, 1278
BssNI GRCGYC 1 cut(s) 261
BssSI CACGAG 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 642
Bst2BI CACGAG 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 1142, 1304
Bst4CI ACNGT 1 cut(s) 1291
BstACI GRCGYC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 653
BstAUI TGTACA 2 cut(s) 3, 1249
BstC8I GCNNGC 3 cut(s) 72, 255, 1124
BstDEI CTNAG 3 cut(s) 581, 1037, 1241
BstDSI CCRYGG 1 cut(s) 642
BstF5I GGATG 4 cut(s) 430, 907, 1057, 1252
BstKTI GATC 5 cut(s) 243, 353, 837, 1193, 1281
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 5 cut(s) 240, 350, 834, 1190, 1278
BstMWI GCNNNNNNNGC 8 cut(s) 80, 118, 254, 653, 805, 911, 959, 1151
BstNI CCWGG 2 cut(s) 1142, 1304
BstSCI CCNGG 5 cut(s) 220, 1140, 1224, 1225, 1302
BstSFI CTRYAG 1 cut(s) 447
BstSLI GKGCMC 1 cut(s) 783
BstV1I GCAGC 4 cut(s) 65, 86, 866, 1132
BstX2I RGATCY 1 cut(s) 834
BstXI CCANNNNNNTGG 1 cut(s) 1167
BstYI RGATCY 1 cut(s) 834
BsuRI GGCC 4 cut(s) 257, 596, 758, 1122
BtgI CCRYGG 1 cut(s) 642
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 4 cut(s) 430, 907, 1057, 1252
BtsI GCAGTG 2 cut(s) 732, 969
BtsIMutI CAGTG 2 cut(s) 732, 969
BveI ACCTGC 1 cut(s) 334
Cac8I GCNNGC 3 cut(s) 72, 255, 1124
CciI TCATGA 1 cut(s) 375
Cfr10I RCCGGY 2 cut(s) 70, 112
Cfr9I CCCGGG 1 cut(s) 1225
Csp6I GTAC 6 cut(s) 4, 406, 692, 886, 1171, 1250
CviAII CATG 4 cut(s) 376, 643, 1253, 1282
CviQI GTAC 6 cut(s) 4, 406, 692, 886, 1171, 1250
DdeI CTNAG 3 cut(s) 581, 1037, 1241
DpnI GATC 5 cut(s) 242, 352, 836, 1192, 1280
DpnII GATC 5 cut(s) 240, 350, 834, 1190, 1278
EaeI YGGCCR 3 cut(s) 255, 594, 1120
Ecl136II GAGCTC 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 642
Eco24I GRGCYC 1 cut(s) 85
Eco32I GATATC 1 cut(s) 822
Eco53kI GAGCTC 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 1225
EcoICRI GAGCTC 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 1140, 1302
EcoRV GATATC 1 cut(s) 822
EcoT14I CCWWGG 1 cut(s) 642
EcoT38I GRGCYC 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 642
Esp3I CGTCTC 1 cut(s) 268
FaeI CATG 4 cut(s) 379, 646, 1256, 1285
FaqI GGGAC 3 cut(s) 74, 725, 1286
FatI CATG 4 cut(s) 375, 642, 1252, 1281
FauI CCCGC 1 cut(s) 114
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 5 cut(s) 54, 75, 855, 1076, 1146
FokI GGATG 4 cut(s) 437, 914, 1064, 1259
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 5 cut(s) 54, 75, 855, 1076, 1146
FspBI CTAG 3 cut(s) 38, 842, 1095
GluI GCNGC 5 cut(s) 54, 75, 855, 1076, 1146
HaeIII GGCC 4 cut(s) 257, 596, 758, 1122
HapII CCGG 8 cut(s) 71, 78, 113, 174, 221, 297, 318, 1226
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 4 cut(s) 379, 646, 1256, 1285
HindIII AAGCTT 1 cut(s) 697
HinfI GANTC 5 cut(s) 302, 332, 468, 575, 947
HpaII CCGG 8 cut(s) 71, 78, 113, 174, 221, 297, 318, 1226
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 4 cut(s) 156, 288, 781, 928
Hpy188I TCNGA 8 cut(s) 62, 103, 582, 814, 946, 983, 1005, 1038
Hpy188III TCNNGA 6 cut(s) 277, 376, 435, 465, 832, 1024
Hpy8I GTNNAC 4 cut(s) 156, 288, 781, 928
Hpy99I CGWCG 3 cut(s) 263, 313, 814
HpyAV CCTTC 7 cut(s) 449, 659, 727, 769, 1165, 1225, 1263
HpyCH4III ACNGT 1 cut(s) 1291
HpyCH4IV ACGT 5 cut(s) 87, 150, 261, 311, 1173
HpyCH4V TGCA 8 cut(s) 449, 475, 656, 781, 854, 905, 1148, 1232
HpyF10VI GCNNNNNNNGC 8 cut(s) 80, 118, 254, 653, 805, 911, 959, 1151
HpyF3I CTNAG 3 cut(s) 581, 1037, 1241
HpySE526I ACGT 5 cut(s) 87, 150, 261, 311, 1173
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 4 cut(s) 379, 646, 1256, 1285
KpnI GGTACC 2 cut(s) 695, 889
KroI GCCGGC 1 cut(s) 70
KroNI GCCGGC 1 cut(s) 72
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 5 cut(s) 240, 350, 834, 1190, 1278
LmnI GCTCC 2 cut(s) 80, 170
Lsp1109I GCAGC 4 cut(s) 65, 86, 866, 1132
LweI GCATC 1 cut(s) 892
MaeI CTAG 3 cut(s) 38, 842, 1095
MaeII ACGT 5 cut(s) 87, 150, 261, 311, 1173
MaeIII GTNAC 2 cut(s) 751, 1312
MalI GATC 5 cut(s) 242, 352, 836, 1192, 1280
MboI GATC 5 cut(s) 240, 350, 834, 1190, 1278
MboII GAAGA 1 cut(s) 599
MfeI CAATTG 3 cut(s) 786, 1149, 1233
MflI RGATCY 1 cut(s) 834
MhlI GDGCHC 3 cut(s) 85, 783, 969
MlsI TGGCCA 1 cut(s) 1122
MluCI AATT 9 cut(s) 165, 177, 399, 417, 786, 906, 1045, 1149, 1233
MluNI TGGCCA 1 cut(s) 1122
MlyI GAGTC 2 cut(s) 341, 477
MmeI TCCRAC 2 cut(s) 81, 792
MnlI CCTC 9 cut(s) 111, 276, 321, 530, 576, 724, 1007, 1029, 1032
Mox20I TGGCCA 1 cut(s) 1122
MroNI GCCGGC 1 cut(s) 70
MscI TGGCCA 1 cut(s) 1122
MseI TTAA 4 cut(s) 398, 563, 986, 1347
MslI CAYNNNNRTG 3 cut(s) 62, 774, 923
Msp20I TGGCCA 1 cut(s) 1122
MspA1I CMGCKG 2 cut(s) 827, 1126
MspI CCGG 8 cut(s) 71, 78, 113, 174, 221, 297, 318, 1226
MspR9I CCNGG 5 cut(s) 222, 1142, 1226, 1227, 1304
MunI CAATTG 3 cut(s) 786, 1149, 1233
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 2 cut(s) 1142, 1304
MwoI GCNNNNNNNGC 8 cut(s) 80, 118, 254, 653, 805, 911, 959, 1151
NaeI GCCGGC 1 cut(s) 72
NciI CCSGG 3 cut(s) 222, 1226, 1227
NcoI CCATGG 1 cut(s) 642
NdeII GATC 5 cut(s) 240, 350, 834, 1190, 1278
NgoMIV GCCGGC 1 cut(s) 70
NlaIII CATG 4 cut(s) 379, 646, 1256, 1285
NlaIV GGNNCC 3 cut(s) 172, 693, 887
NmuCI GTSAC 1 cut(s) 751
PagI TCATGA 1 cut(s) 375
PaqCI CACCTGC 1 cut(s) 334
PctI GAATGC 1 cut(s) 292
PdiI GCCGGC 1 cut(s) 72
PfeI GAWTC 3 cut(s) 302, 575, 947
PkrI GCNGC 5 cut(s) 55, 76, 856, 1077, 1147
PleI GAGTC 2 cut(s) 340, 476
PpsI GAGTC 2 cut(s) 340, 476
PsiI TTATAA 1 cut(s) 416
Psp124BI GAGCTC 1 cut(s) 85
Psp6I CCWGG 2 cut(s) 1140, 1302
PspGI CCWGG 2 cut(s) 1140, 1302
PspN4I GGNNCC 3 cut(s) 172, 693, 887
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 1 cut(s) 834
PvuII CAGCTG 1 cut(s) 1126
RsaI GTAC 6 cut(s) 5, 407, 693, 887, 1172, 1251
RsaNI GTAC 6 cut(s) 4, 406, 692, 886, 1171, 1250
RseI CAYNNNNRTG 3 cut(s) 62, 774, 923
SacI GAGCTC 1 cut(s) 85
SaqAI TTAA 4 cut(s) 398, 563, 986, 1347
SatI GCNGC 5 cut(s) 54, 75, 855, 1076, 1146
Sau3AI GATC 5 cut(s) 240, 350, 834, 1190, 1278
SchI GAGTC 2 cut(s) 341, 477
ScrFI CCNGG 5 cut(s) 222, 1142, 1226, 1227, 1304
SduI GDGCHC 3 cut(s) 85, 783, 969
SfaNI GCATC 1 cut(s) 892
SfcI CTRYAG 1 cut(s) 447
SmaI CCCGGG 1 cut(s) 1227
SmiMI CAYNNNNRTG 3 cut(s) 62, 774, 923
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SpeI ACTAGT 1 cut(s) 841
Sse9I AATT 9 cut(s) 165, 177, 399, 417, 786, 906, 1045, 1149, 1233
SsiI CCGC 4 cut(s) 121, 140, 827, 1076
SspMI CTAG 3 cut(s) 38, 842, 1095
SstI GAGCTC 1 cut(s) 85
StyD4I CCNGG 5 cut(s) 220, 1140, 1224, 1225, 1302
StyI CCWWGG 1 cut(s) 642
TaaI ACNGT 1 cut(s) 1291
TaiI ACGT 5 cut(s) 90, 153, 264, 314, 1176
TasI AATT 9 cut(s) 165, 177, 399, 417, 786, 906, 1045, 1149, 1233
TatI WGTACW 2 cut(s) 3, 1249
TauI GCSGC 1 cut(s) 1078
TfiI GAWTC 3 cut(s) 302, 575, 947
Tru1I TTAA 4 cut(s) 398, 563, 986, 1347
Tru9I TTAA 4 cut(s) 398, 563, 986, 1347
TscAI CASTG 2 cut(s) 739, 969
TseFI GTSAC 1 cut(s) 751
TseI GCWGC 4 cut(s) 53, 74, 854, 1145
Tsp45I GTSAC 1 cut(s) 751
TspDTI ATGAA 3 cut(s) 529, 1068, 1207
TspMI CCCGGG 1 cut(s) 1225
TspRI CASTG 2 cut(s) 739, 969
VneI GTGCAC 1 cut(s) 779
XapI RAATTY 1 cut(s) 1045
XcmI CCANNNNNNNNNTGG 1 cut(s) 416
XmaI CCCGGG 1 cut(s) 1225
XspI CTAG 3 cut(s) 38, 842, 1095
ZraI GACGTC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.