MD07G1229200.v1.1

sodium-coupled neutral amino acid transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
30429273 .. 30432141
2869 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1229200.v1.1.491

Sequence Viewer

Length: 1308 bp
ATGTCGCCGGCAGCCGAAGCCCACGTGCCGCTGCTGCAGGACAGAAAGCCGGTGAGGCGGGGGTCTGTTTCAGGGGCGGTGTTCAACGTGTCCACGAGCATAATTGGCGCCGGAATCATGTCCATACCGGCCACTCTCAAGGTGCTTGGTGTGATACCGGCTTTTGTGCTTATTGTGATCATTGCTTTGCTGGCTGACGTCTCGGTGGAGTTCCTGATGAGGTTCACGCATTCCGGCGAGTCCACGACGTATTCCGGCGTCATGAGGGAGTCCTTTGGGCAGGCGGGATCGGTTGCCACACAGATATGTGTCATGATTACTAATCTTGGGTGCTTAATTATGTACCAGATTATAATTGGGGATGTTCTATCTGGAAATGGGGCTGCCGGAGTAGGGCATTCCGGTGTTCTGCAAGAGTGGTTTGGAGTCCATTGGTGGAACTCACGTGAAATTGCCCTCCTATTCACGCTTATTTTCATCTTCCTGCCACTGGTTTTGTTAAGGCGAGTAGAGTCTCTGAGGTTCAGTTCAGCCATATCAATTCTTCTTGCTGTGGTTTTTGTTGGCATAAGTTCTGCCATGGCGATCTATGCAATCTTTGAAGGGAAAGTCAACACCCCAAGATTGTTACCAAGCTTGGGCAAACAAACCTCCTTCTTTGACCTTTTCACTGCTGTTCCAGTCATTGTTACAGCCTTCACTTTTCACTTCAACGTTCACCCAATTGGCTTCGAGCTTGGTAAGCCGTCTGATATGATATCAGCGGTCAGGATTTCACTGGTGCTCTGTGCAGCCATCTACTTCTCCATTGGACTGTTTGGGTACCTTTTGTTTGGGGATGCAATCGTGGCTGACATACTTGTGAATTTTGACAGAAGCTCAGATTCAGCAATGGGGGCAGTGCTGAATGATGCGGTTAGATTAAGCTATGCCCTCCATCTGATGTTGGTTTTTCCTCTCTTGAACTTTTCTCTGAGGGTAAATTTGGATGAACTGCTTTTCCCTCAAAAGCCGCTTTTGGCCGCAGATAGTAGGAGATTTGTGCTCCTCACTCTTGGCCTGCTGGTTTTCTCTTACCTGGCTGCGATTGCCTTCCCAAACATTTGGTACATTTTTCAGTTTTTGGGATCAACTTCTGCTGTCTGCCTTGCCTTCATTTTCCCTGGTGCGATTGTTCTACGGGATGTACATGGCATATCTACAGGAAAGGACAGGATCATGGCAACTGTGATGGTAGTCCTGGCAGTTGTAACAAGTGCAGTTGCCATTTCCACCAATGTATATAACTTTTTTGGGAACAAGTCCTAG

Protein Analysis

436

Amino Acids

46.99

Weight (kDa)

8.34

Isoelectric Point (pI)

29.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 20 - 417 1.6e-48 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 22 - 423 1.4e-06 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
AatII GACGTC 1 cut(s) 201
Acc65I GGTACC 1 cut(s) 822
AccB1I GGYRCC 2 cut(s) 107, 822
AciI CCGC 8 cut(s) 29, 58, 77, 284, 764, 914, 1013, 1023
AclI AACGTT 1 cut(s) 714
AclWI GGATC 3 cut(s) 295, 1135, 1223
AcoI YGGCCR 2 cut(s) 129, 1020
AcsI RAATTY 2 cut(s) 865, 982
AcvI CACGTG 2 cut(s) 25, 446
AcyI GRCGYC 3 cut(s) 108, 198, 258
AfaI GTAC 4 cut(s) 344, 824, 1109, 1188
AfiI CCNNNNNNNGG 3 cut(s) 393, 490, 638
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 4 cut(s) 85, 602, 712, 964
AjnI CCWGG 3 cut(s) 1077, 1162, 1239
AloI GAACNNNNNNTCC 2 cut(s) 984, 1016
AluBI AGCT 4 cut(s) 636, 736, 879, 927
AluI AGCT 4 cut(s) 636, 736, 879, 927
Alw21I GWGCWC 2 cut(s) 786, 1047
Alw26I GTCTC 2 cut(s) 205, 519
AlwI GGATC 3 cut(s) 295, 1135, 1223
AoxI GGCC 3 cut(s) 129, 1020, 1057
ApeKI GCWGC 6 cut(s) 11, 31, 34, 383, 791, 1082
ApoI RAATTY 2 cut(s) 865, 982
Asp718I GGTACC 1 cut(s) 822
AspLEI GCGC 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 64, 710
BanI GGYRCC 2 cut(s) 107, 822
BauI CACGAG 1 cut(s) 94
BbrPI CACGTG 2 cut(s) 25, 446
Bbv12I GWGCWC 2 cut(s) 786, 1047
BbvI GCAGC 6 cut(s) 18, 21, 23, 370, 803, 1069
BccI CCATC 3 cut(s) 803, 945, 1225
BceAI ACGGC 1 cut(s) 730
BciT130I CCWGG 3 cut(s) 1079, 1164, 1241
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 2 cut(s) 205, 519
BfaI CTAG 1 cut(s) 1306
BfmI CTRYAG 2 cut(s) 35, 1200
BfoI RGCGCY 1 cut(s) 111
BglI GCCNNNNNGGC 1 cut(s) 55
BisI GCNGC 9 cut(s) 12, 29, 32, 35, 384, 792, 1013, 1023, 1083
BlsI GCNGC 9 cut(s) 13, 30, 33, 36, 385, 793, 1014, 1024, 1084
Bme1390I CCNGG 3 cut(s) 1079, 1164, 1241
BmiI GGNNCC 2 cut(s) 109, 824
BmrFI CCNGG 3 cut(s) 1079, 1164, 1241
BmsI GCATC 2 cut(s) 829, 901
BpuEI CTTGAG 1 cut(s) 122
BsaAI YACGTR 2 cut(s) 25, 446
BsaHI GRCGYC 3 cut(s) 108, 198, 258
BsaJI CCNNGG 2 cut(s) 579, 1162
BsaWI WCCGGW 1 cut(s) 401
Bsc4I CCNNNNNNNGG 3 cut(s) 393, 490, 638
Bse118I RCCGGY 4 cut(s) 7, 49, 127, 157
Bse1I ACTGG 3 cut(s) 495, 680, 783
Bse3DI GCAATG 2 cut(s) 180, 897
BseBI CCWGG 3 cut(s) 1079, 1164, 1241
BseDI CCNNGG 2 cut(s) 579, 1162
BseGI GGATG 4 cut(s) 367, 844, 994, 1189
BseLI CCNNNNNNNGG 3 cut(s) 393, 490, 638
BseMI GCAATG 2 cut(s) 180, 897
BseMII CTCAG 3 cut(s) 509, 894, 965
BseNI ACTGG 3 cut(s) 495, 680, 783
BseRI GAGGAG 1 cut(s) 1037
BseXI GCAGC 6 cut(s) 18, 21, 23, 370, 803, 1069
BsgI GTGCAG 2 cut(s) 810, 1278
BshFI GGCC 3 cut(s) 131, 1022, 1059
BshNI GGYRCC 2 cut(s) 107, 822
BsiHKAI GWGCWC 2 cut(s) 786, 1047
BsiSI CCGG 9 cut(s) 8, 50, 111, 128, 158, 234, 255, 387, 402
BslI CCNNNNNNNGG 3 cut(s) 393, 490, 638
BsmAI GTCTC 2 cut(s) 205, 519
BsmBI CGTCTC 1 cut(s) 205
BsmI GAATGC 2 cut(s) 229, 397
BsnI GGCC 3 cut(s) 131, 1022, 1059
Bsp1286I GDGCHC 2 cut(s) 786, 1047
Bsp1407I TGTACA 1 cut(s) 1186
Bsp143I GATC 5 cut(s) 177, 287, 585, 1127, 1215
Bsp19I CCATGG 1 cut(s) 579
BspACI CCGC 8 cut(s) 29, 58, 77, 284, 764, 914, 1013, 1023
BspANI GGCC 3 cut(s) 131, 1022, 1059
BspCNI CTCAG 3 cut(s) 510, 893, 966
BspHI TCATGA 2 cut(s) 261, 312
BspLI GGNNCC 2 cut(s) 109, 824
BspMAI CTGCAG 1 cut(s) 39
BspPI GGATC 3 cut(s) 295, 1135, 1223
BspT107I GGYRCC 2 cut(s) 107, 822
BsrDI GCAATG 2 cut(s) 180, 897
BsrFI RCCGGY 4 cut(s) 7, 49, 127, 157
BsrGI TGTACA 1 cut(s) 1186
BsrI ACTGG 3 cut(s) 495, 680, 783
BssAI RCCGGY 4 cut(s) 7, 49, 127, 157
BssECI CCNNGG 2 cut(s) 579, 1162
BssMI GATC 5 cut(s) 177, 287, 585, 1127, 1215
BssNI GRCGYC 3 cut(s) 108, 198, 258
BssSI CACGAG 1 cut(s) 94
BssT1I CCWWGG 1 cut(s) 579
Bst2BI CACGAG 1 cut(s) 94
Bst2UI CCWGG 3 cut(s) 1079, 1164, 1241
Bst4CI ACNGT 2 cut(s) 816, 1228
BstACI GRCGYC 3 cut(s) 108, 198, 258
BstAUI TGTACA 1 cut(s) 1186
BstBAI YACGTR 2 cut(s) 25, 446
BstC8I GCNNGC 4 cut(s) 9, 192, 282, 1061
BstDEI CTNAG 3 cut(s) 518, 880, 974
BstDSI CCRYGG 1 cut(s) 579
BstF5I GGATG 4 cut(s) 367, 844, 994, 1189
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 5 cut(s) 180, 290, 588, 1130, 1218
BstMAI GTCTC 2 cut(s) 205, 519
BstMBI GATC 5 cut(s) 177, 287, 585, 1127, 1215
BstNI CCWGG 3 cut(s) 1079, 1164, 1241
BstSCI CCNGG 3 cut(s) 1077, 1162, 1239
BstSFI CTRYAG 2 cut(s) 35, 1200
BstV1I GCAGC 6 cut(s) 18, 21, 23, 370, 803, 1069
BstXI CCANNNNNNTGG 1 cut(s) 1104
BsuRI GGCC 3 cut(s) 131, 1022, 1059
BtgI CCRYGG 1 cut(s) 579
BtsCI GGATG 4 cut(s) 367, 844, 994, 1189
BtsI GCAGTG 2 cut(s) 669, 906
BtsIMutI CAGTG 4 cut(s) 488, 669, 776, 906
Cac8I GCNNGC 4 cut(s) 9, 192, 282, 1061
CciI TCATGA 2 cut(s) 261, 312
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 4 cut(s) 7, 49, 127, 157
CseI GACGC 1 cut(s) 247
Csp6I GTAC 4 cut(s) 343, 823, 1108, 1187
CspCI CAANNNNNGTGG 2 cut(s) 477, 512
CviAII CATG 6 cut(s) 118, 262, 313, 580, 1190, 1219
CviQI GTAC 4 cut(s) 343, 823, 1108, 1187
DdeI CTNAG 3 cut(s) 518, 880, 974
DinI GGCGCC 1 cut(s) 109
DpnI GATC 5 cut(s) 179, 289, 587, 1129, 1217
DpnII GATC 5 cut(s) 177, 287, 585, 1127, 1215
EaeI YGGCCR 2 cut(s) 129, 1020
Eco130I CCWWGG 1 cut(s) 579
Eco32I GATATC 1 cut(s) 759
Eco72I CACGTG 2 cut(s) 25, 446
EcoRII CCWGG 3 cut(s) 1077, 1162, 1239
EcoRV GATATC 1 cut(s) 759
EcoT14I CCWWGG 1 cut(s) 579
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 579
Esp3I CGTCTC 1 cut(s) 205
FaeI CATG 6 cut(s) 121, 265, 316, 583, 1193, 1222
FatI CATG 6 cut(s) 117, 261, 312, 579, 1189, 1218
FauI CCCGC 2 cut(s) 51, 277
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 9 cut(s) 12, 29, 32, 35, 384, 792, 1013, 1023, 1083
FokI GGATG 4 cut(s) 374, 851, 1001, 1196
Fsp4HI GCNGC 9 cut(s) 12, 29, 32, 35, 384, 792, 1013, 1023, 1083
FspBI CTAG 1 cut(s) 1306
GlaI GCGC 1 cut(s) 109
GluI GCNGC 9 cut(s) 12, 29, 32, 35, 384, 792, 1013, 1023, 1083
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 3 cut(s) 131, 1022, 1059
HapII CCGG 9 cut(s) 8, 50, 111, 128, 158, 234, 255, 387, 402
HgaI GACGC 1 cut(s) 247
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 3 cut(s) 108, 198, 258
Hin1II CATG 6 cut(s) 121, 265, 316, 583, 1193, 1222
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HindIII AAGCTT 1 cut(s) 634
HinfI GANTC 6 cut(s) 114, 239, 269, 426, 512, 884
HpaII CCGG 9 cut(s) 8, 50, 111, 128, 158, 234, 255, 387, 402
HphI GGTGA 2 cut(s) 64, 710
Hpy166II GTNNAC 5 cut(s) 93, 225, 243, 613, 718
Hpy188I TCNGA 5 cut(s) 519, 751, 883, 942, 975
Hpy188III TCNNGA 6 cut(s) 214, 262, 313, 372, 769, 961
Hpy8I GTNNAC 5 cut(s) 93, 225, 243, 613, 718
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 5 cut(s) 596, 664, 706, 1102, 1162
HpyCH4III ACNGT 2 cut(s) 816, 1228
HpyCH4IV ACGT 6 cut(s) 24, 87, 198, 248, 445, 714
HpyCH4V TGCA 6 cut(s) 37, 412, 593, 791, 842, 1259
HpyF3I CTNAG 3 cut(s) 518, 880, 974
HpySE526I ACGT 6 cut(s) 24, 87, 198, 248, 445, 714
Hsp92I GRCGYC 3 cut(s) 108, 198, 258
Hsp92II CATG 6 cut(s) 121, 265, 316, 583, 1193, 1222
HspAI GCGC 1 cut(s) 108
KasI GGCGCC 1 cut(s) 107
KpnI GGTACC 1 cut(s) 826
KroI GCCGGC 1 cut(s) 7
KroNI GCCGGC 1 cut(s) 9
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 5 cut(s) 177, 287, 585, 1127, 1215
LmnI GCTCC 1 cut(s) 1050
Lsp1109I GCAGC 6 cut(s) 18, 21, 23, 370, 803, 1069
LweI GCATC 2 cut(s) 829, 901
MaeI CTAG 1 cut(s) 1306
MaeII ACGT 6 cut(s) 24, 87, 198, 248, 445, 714
MaeIII GTNAC 3 cut(s) 627, 688, 1249
MalI GATC 5 cut(s) 179, 289, 587, 1129, 1217
MboI GATC 5 cut(s) 177, 287, 585, 1127, 1215
MboII GAAGA 2 cut(s) 472, 536
MfeI CAATTG 1 cut(s) 723
MhlI GDGCHC 2 cut(s) 786, 1047
MluCI AATT 8 cut(s) 102, 336, 354, 450, 540, 723, 865, 982
Mly113I GGCGCC 1 cut(s) 108
MlyI GAGTC 4 cut(s) 248, 278, 435, 521
MroNI GCCGGC 1 cut(s) 7
MseI TTAA 3 cut(s) 335, 500, 923
MslI CAYNNNNRTG 3 cut(s) 304, 402, 860
MspA1I CMGCKG 2 cut(s) 31, 764
MspI CCGG 9 cut(s) 8, 50, 111, 128, 158, 234, 255, 387, 402
MspR9I CCNGG 3 cut(s) 1079, 1164, 1241
MunI CAATTG 1 cut(s) 723
Mva1269I GAATGC 2 cut(s) 229, 397
MvaI CCWGG 3 cut(s) 1079, 1164, 1241
NaeI GCCGGC 1 cut(s) 9
NarI GGCGCC 1 cut(s) 108
NcoI CCATGG 1 cut(s) 579
NdeII GATC 5 cut(s) 177, 287, 585, 1127, 1215
NgoMIV GCCGGC 1 cut(s) 7
NlaIII CATG 6 cut(s) 121, 265, 316, 583, 1193, 1222
NlaIV GGNNCC 2 cut(s) 109, 824
PagI TCATGA 2 cut(s) 261, 312
PctI GAATGC 2 cut(s) 229, 397
PdiI GCCGGC 1 cut(s) 9
PfeI GAWTC 2 cut(s) 114, 884
PkrI GCNGC 9 cut(s) 13, 30, 33, 36, 385, 793, 1014, 1024, 1084
PleI GAGTC 4 cut(s) 247, 277, 434, 520
PluTI GGCGCC 1 cut(s) 111
PmaCI CACGTG 2 cut(s) 25, 446
PmlI CACGTG 2 cut(s) 25, 446
PpsI GAGTC 4 cut(s) 247, 277, 434, 520
Ppu21I YACGTR 2 cut(s) 25, 446
PsiI TTATAA 1 cut(s) 353
Psp1406I AACGTT 1 cut(s) 714
Psp6I CCWGG 3 cut(s) 1077, 1162, 1239
PspCI CACGTG 2 cut(s) 25, 446
PspGI CCWGG 3 cut(s) 1077, 1162, 1239
PspN4I GGNNCC 2 cut(s) 109, 824
PstI CTGCAG 1 cut(s) 39
RsaI GTAC 4 cut(s) 344, 824, 1109, 1188
RsaNI GTAC 4 cut(s) 343, 823, 1108, 1187
RseI CAYNNNNRTG 3 cut(s) 304, 402, 860
SaqAI TTAA 3 cut(s) 335, 500, 923
SatI GCNGC 9 cut(s) 12, 29, 32, 35, 384, 792, 1013, 1023, 1083
Sau3AI GATC 5 cut(s) 177, 287, 585, 1127, 1215
SchI GAGTC 4 cut(s) 248, 278, 435, 521
ScrFI CCNGG 3 cut(s) 1079, 1164, 1241
SduI GDGCHC 2 cut(s) 786, 1047
SfaNI GCATC 2 cut(s) 829, 901
SfcI CTRYAG 2 cut(s) 35, 1200
SfoI GGCGCC 1 cut(s) 109
SmiMI CAYNNNNRTG 3 cut(s) 304, 402, 860
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 8 cut(s) 102, 336, 354, 450, 540, 723, 865, 982
SsiI CCGC 8 cut(s) 29, 58, 77, 284, 764, 914, 1013, 1023
SspDI GGCGCC 1 cut(s) 107
SspMI CTAG 1 cut(s) 1306
StyD4I CCNGG 3 cut(s) 1077, 1162, 1239
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 2 cut(s) 816, 1228
TaiI ACGT 6 cut(s) 27, 90, 201, 251, 448, 717
TaqI TCGA 1 cut(s) 732
TasI AATT 8 cut(s) 102, 336, 354, 450, 540, 723, 865, 982
TatI WGTACW 1 cut(s) 1186
TauI GCSGC 3 cut(s) 31, 1015, 1025
TfiI GAWTC 2 cut(s) 114, 884
Tru1I TTAA 3 cut(s) 335, 500, 923
Tru9I TTAA 3 cut(s) 335, 500, 923
TscAI CASTG 4 cut(s) 495, 676, 783, 906
TseI GCWGC 6 cut(s) 11, 31, 34, 383, 791, 1082
TspDTI ATGAA 3 cut(s) 466, 1005, 1144
TspRI CASTG 4 cut(s) 495, 676, 783, 906
XapI RAATTY 2 cut(s) 865, 982
XcmI CCANNNNNNNNNTGG 1 cut(s) 353
XspI CTAG 1 cut(s) 1306
ZraI GACGTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.