Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004145

Physical Location & Seq

Genomic Coordinates Forward (+)

5928188 .. 5929260

Gene Structure 1073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1044000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGTTGCCGGCAGTCGAAGCCCATGTGCCACTGCTGCAGGACAGAAAGCCGGTGAGGCGCAGGTTTGTTTCAGGGGCGGTGTTCAACGTGTCCATGAGCATAATTGGTGCCGGAATCATGTCCATACCGGCCACTCTCAAGGTGCTTGGTGTGATACCGGCTTTTGTGCTTATTGTGATCATTGCTTTGTTGGCCGACGTCTCGGTGGAGTTCCTGATGAGGTTCACGCATTCCGACGAGTCCACGATGTATTCCGGCGTTATGAGGGAGTCCTTTGGGCAGATTATAATTGGGGATGTTCTATCTGGAAATGGGGCTGTCGGAGTAAGGCATTCCGGTGTTCTGCAAGAGTGGTTTGGAGTCTATTGGTGGAACTCACGTGAAATTGCCCTCCTATTCACGTTTATTTTCATCTTTCTGCCATTGGTTTTGTTAAGAGTCTCTGAGGTTCATTCTGCCATGGCGATCTATGCAATCTTTGAAGGGAAAGTCAACACCCCAAGATTGTTACCAAGCTCGGGCAAACAAACCTCCTTCTTTGACTTTTTCACTGTTGTTCCAGTCCTTGTTACAGCCTTCACTTTTCACTTCAACGTTCACCCAATTGGCTTTGAGCTTGGTAAGCCGTCTGATATGATATCAACGGTCAGGATTTCATTGGTGCTCTATGCAGCCATCTACTTCTCCATTGGACTGTTTGGGTACCTTTTGTTTGGGGATGCAATCGTGGTTGACATACTTGTGAATTTTGATAGAAGCTCAGATTCAGCAATGGGGGCAGTGCTGAATGATGCGGTCAGATTAAGCTATGCCCTCTATCTGATGTTGGTTTTTCCTCTCTTAAACTTTTCTCTGAGGGTAAATTTGGATGAATTGTGCATCAACATTTCTGCTCAGGGCTTGGTACAATTCTGGGCCCTCAAAAGATGCAAATTGGAGCGTCTGACAAAGTACAAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

321

Amino Acids

35.56

Weight (kDa)

8.51

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	26 - 94	8.9e-08	Transmembrane amino acid transporter protein
Aa_trans	PF01490	135 - 296	9.4e-16	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40420 AT3G56200
fragaria_vesca	FvH4_7g25490 FvH4_7g25490 FvH4_7g25500
malus_domestica	MD01G1161200.v1.1 MD01G1161300.v1.1 MD06G1044000.v1.1 MD07G1229200.v1.1
prunus_persica	Prupe.2G259300_v2.0.a1 Prupe.2G259400_v2.0.a1
pyrus_communis	pycom01g17700 pycom01g17710 pycom07g20740
rosa_chinensis	RchiOBHm_Chr1g0371451 RchiOBHm_Chr1g0371471
rosa_laevigata	RLG00000026959 RLG00000026960
rosa_multiflora	Rmu_sc0000809.1_g000020 Rmu_sc0000809.1_g000021 Rmu_sc0029071.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285660 Rroxscaffold_4G00285670
rosa_rugosa	Rorug01G0364100 Rorug01G0364100
rosa_samantha	Rh1AG374300 Rh1AG374400 Rh1BG337800 Rh1CG351000 Rh1CG351100 Rh1DG368800
rosa_wichuraiana	Rw1G032920 Rw1G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AatII	GACGTC	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	51
Acc65I	GGTACC	1 cut(s)	702
AccB1I	GGYRCC	2 cut(s)	107, 702
AciI	CCGC	2 cut(s)	77, 794
AclI	AACGTT	1 cut(s)	594
AcoI	YGGCCR	2 cut(s)	129, 192
AcsI	RAATTY	2 cut(s)	745, 862
AcvI	CACGTG	1 cut(s)	380
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	3 cut(s)	704, 906, 953
AfiI	CCNNNNNNNGG	1 cut(s)	518
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	3 cut(s)	85, 482, 592
AluBI	AGCT	4 cut(s)	516, 616, 759, 807
AluI	AGCT	4 cut(s)	516, 616, 759, 807
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	2 cut(s)	205, 445
Ama87I	CYCGRG	1 cut(s)	517
AoxI	GGCC	3 cut(s)	129, 192, 915
ApaI	GGGCCC	1 cut(s)	919
ApeKI	GCWGC	2 cut(s)	34, 671
ApoI	RAATTY	2 cut(s)	745, 862
Asp718I	GGTACC	1 cut(s)	702
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	915, 916
AsuHPI	GGTGA	2 cut(s)	64, 590
AvaI	CYCGRG	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	919
BanI	GGYRCC	2 cut(s)	107, 702
BanII	GRGCYC	1 cut(s)	919
BbrPI	CACGTG	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	666
BbvI	GCAGC	2 cut(s)	21, 683
BccI	CCATC	1 cut(s)	683
BceAI	ACGGC	1 cut(s)	610
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	2 cut(s)	205, 445
BfmI	CTRYAG	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	51
BglI	GCCNNNNNGGC	1 cut(s)	55
BisI	GCNGC	2 cut(s)	35, 672
BlsI	GCNGC	2 cut(s)	36, 673
BmeT110I	CYCGRG	1 cut(s)	517
BmgT120I	GGNCC	2 cut(s)	915, 916
BmiI	GGNNCC	3 cut(s)	109, 704, 917
BmsI	GCATC	4 cut(s)	709, 781, 888, 917
Bpu10I	CCTNAGC	1 cut(s)	894
BpuEI	CTTGAG	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	459
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse118I	RCCGGY	4 cut(s)	7, 49, 127, 157
Bse1I	ACTGG	1 cut(s)	560
Bse3DI	GCAATG	2 cut(s)	180, 777
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	3 cut(s)	301, 724, 874
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseMI	GCAATG	2 cut(s)	180, 777
BseMII	CTCAG	4 cut(s)	435, 774, 845, 908
BseNI	ACTGG	1 cut(s)	560
BseSI	GKGCMC	1 cut(s)	919
BseXI	GCAGC	2 cut(s)	21, 683
BshFI	GGCC	3 cut(s)	131, 194, 917
BshNI	GGYRCC	2 cut(s)	107, 702
BsiHKAI	GWGCWC	1 cut(s)	666
BsiHKCI	CYCGRG	1 cut(s)	517
BsiSI	CCGG	7 cut(s)	8, 50, 111, 128, 158, 255, 336
BslI	CCNNNNNNNGG	1 cut(s)	518
BsmAI	GTCTC	2 cut(s)	205, 445
BsmBI	CGTCTC	1 cut(s)	205
BsmI	GAATGC	2 cut(s)	229, 331
BsnI	GGCC	3 cut(s)	131, 194, 917
BsoBI	CYCGRG	1 cut(s)	517
Bsp120I	GGGCCC	1 cut(s)	915
Bsp1286I	GDGCHC	2 cut(s)	666, 919
Bsp143I	GATC	2 cut(s)	177, 465
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	2 cut(s)	77, 794
BspANI	GGCC	3 cut(s)	131, 194, 917
BspCNI	CTCAG	4 cut(s)	436, 773, 846, 907
BspLI	GGNNCC	3 cut(s)	109, 704, 917
BspMAI	CTGCAG	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	51
BspT107I	GGYRCC	2 cut(s)	107, 702
BsrDI	GCAATG	2 cut(s)	180, 777
BsrFI	RCCGGY	4 cut(s)	7, 49, 127, 157
BsrI	ACTGG	1 cut(s)	560
BssAI	RCCGGY	4 cut(s)	7, 49, 127, 157
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	2 cut(s)	177, 465
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	459
Bst4CI	ACNGT	3 cut(s)	553, 646, 696
BstACI	GRCGYC	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	4 cut(s)	444, 760, 854, 894
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	3 cut(s)	301, 724, 874
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	2 cut(s)	180, 468
BstMAI	GTCTC	2 cut(s)	205, 445
BstMBI	GATC	2 cut(s)	177, 465
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 34, 55, 191, 470, 622, 776
BstSFI	CTRYAG	1 cut(s)	35
BstSLI	GKGCMC	1 cut(s)	919
BstV1I	GCAGC	2 cut(s)	21, 683
BsuRI	GGCC	3 cut(s)	131, 194, 917
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	3 cut(s)	301, 724, 874
BtsI	GCAGTG	2 cut(s)	29, 786
BtsIMutI	CAGTG	3 cut(s)	29, 549, 786
BveI	ACCTGC	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	1 cut(s)	60
Cfr10I	RCCGGY	4 cut(s)	7, 49, 127, 157
Cfr13I	GGNCC	2 cut(s)	915, 916
CseI	GACGC	1 cut(s)	929
Csp6I	GTAC	3 cut(s)	703, 905, 952
CviAII	CATG	4 cut(s)	23, 94, 118, 460
CviQI	GTAC	3 cut(s)	703, 905, 952
DdeI	CTNAG	4 cut(s)	444, 760, 854, 894
DpnI	GATC	2 cut(s)	179, 467
DpnII	GATC	2 cut(s)	177, 465
EaeI	YGGCCR	2 cut(s)	129, 192
Eco130I	CCWWGG	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	919
Eco32I	GATATC	1 cut(s)	639
Eco72I	CACGTG	1 cut(s)	380
Eco88I	CYCGRG	1 cut(s)	517
EcoO109I	RGGNCCY	1 cut(s)	916
EcoRV	GATATC	1 cut(s)	639
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	919
ErhI	CCWWGG	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	4 cut(s)	26, 97, 121, 463
FatI	CATG	4 cut(s)	22, 93, 117, 459
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	2 cut(s)	35, 672
FokI	GGATG	3 cut(s)	308, 731, 881
FriOI	GRGCYC	1 cut(s)	919
Fsp4HI	GCNGC	2 cut(s)	35, 672
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	2 cut(s)	35, 672
HaeIII	GGCC	3 cut(s)	131, 194, 917
HapII	CCGG	7 cut(s)	8, 50, 111, 128, 158, 255, 336
HgaI	GACGC	1 cut(s)	929
HhaI	GCGC	1 cut(s)	60
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	26, 97, 121, 463
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	2 cut(s)	493, 733
HindII	GTYRAC	2 cut(s)	493, 733
HinfI	GANTC	6 cut(s)	114, 239, 269, 360, 438, 764
HpaII	CCGG	7 cut(s)	8, 50, 111, 128, 158, 255, 336
HphI	GGTGA	2 cut(s)	64, 590
Hpy166II	GTNNAC	5 cut(s)	225, 243, 493, 598, 733
Hpy188I	TCNGA	9 cut(s)	235, 323, 445, 631, 763, 800, 822, 855, 945
Hpy188III	TCNNGA	3 cut(s)	214, 306, 649
Hpy8I	GTNNAC	5 cut(s)	225, 243, 493, 598, 733
Hpy99I	CGWCG	2 cut(s)	200, 239
HpyAV	CCTTC	3 cut(s)	476, 544, 586
HpyCH4III	ACNGT	3 cut(s)	553, 646, 696
HpyCH4IV	ACGT	5 cut(s)	87, 198, 379, 401, 594
HpyCH4V	TGCA	7 cut(s)	37, 346, 473, 671, 722, 879, 930
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 34, 55, 191, 470, 622, 776
HpyF3I	CTNAG	4 cut(s)	444, 760, 854, 894
HpySE526I	ACGT	5 cut(s)	87, 198, 379, 401, 594
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	26, 97, 121, 463
HspAI	GCGC	1 cut(s)	58
KpnI	GGTACC	1 cut(s)	706
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	177, 465
LmnI	GCTCC	1 cut(s)	937
Lsp1109I	GCAGC	2 cut(s)	21, 683
LweI	GCATC	4 cut(s)	709, 781, 888, 917
MaeII	ACGT	5 cut(s)	87, 198, 379, 401, 594
MaeIII	GTNAC	2 cut(s)	507, 568
MalI	GATC	2 cut(s)	179, 467
MboI	GATC	2 cut(s)	177, 465
MfeI	CAATTG	1 cut(s)	603
MhlI	GDGCHC	2 cut(s)	666, 919
MluCI	AATT	9 cut(s)	102, 288, 384, 603, 745, 862, 872, 908, 932
MlyI	GAGTC	4 cut(s)	248, 278, 369, 447
MmeI	TCCRAC	2 cut(s)	258, 301
MroNI	GCCGGC	1 cut(s)	7
MseI	TTAA	3 cut(s)	434, 803, 842
MslI	CAYNNNNRTG	2 cut(s)	336, 740
MspI	CCGG	7 cut(s)	8, 50, 111, 128, 158, 255, 336
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	2 cut(s)	229, 331
MwoI	GCNNNNNNNGC	7 cut(s)	17, 34, 55, 191, 470, 622, 776
NaeI	GCCGGC	1 cut(s)	9
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	2 cut(s)	177, 465
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	4 cut(s)	26, 97, 121, 463
NlaIV	GGNNCC	3 cut(s)	109, 704, 917
PctI	GAATGC	2 cut(s)	229, 331
PdiI	GCCGGC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	114, 764
PkrI	GCNGC	2 cut(s)	36, 673
PleI	GAGTC	4 cut(s)	247, 277, 368, 446
PmaCI	CACGTG	1 cut(s)	380
PmlI	CACGTG	1 cut(s)	380
PpsI	GAGTC	4 cut(s)	247, 277, 368, 446
Ppu21I	YACGTR	1 cut(s)	380
PsiI	TTATAA	1 cut(s)	287
Psp1406I	AACGTT	1 cut(s)	594
PspCI	CACGTG	1 cut(s)	380
PspN4I	GGNNCC	3 cut(s)	109, 704, 917
PspOMI	GGGCCC	1 cut(s)	915
PspPI	GGNCC	2 cut(s)	915, 916
PstI	CTGCAG	1 cut(s)	39
RsaI	GTAC	3 cut(s)	704, 906, 953
RsaNI	GTAC	3 cut(s)	703, 905, 952
RseI	CAYNNNNRTG	2 cut(s)	336, 740
SaqAI	TTAA	3 cut(s)	434, 803, 842
SatI	GCNGC	2 cut(s)	35, 672
Sau3AI	GATC	2 cut(s)	177, 465
Sau96I	GGNCC	2 cut(s)	915, 916
SchI	GAGTC	4 cut(s)	248, 278, 369, 447
SduI	GDGCHC	2 cut(s)	666, 919
SfaNI	GCATC	4 cut(s)	709, 781, 888, 917
SfcI	CTRYAG	1 cut(s)	35
SmiMI	CAYNNNNRTG	2 cut(s)	336, 740
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	9 cut(s)	102, 288, 384, 603, 745, 862, 872, 908, 932
SsiI	CCGC	2 cut(s)	77, 794
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	3 cut(s)	553, 646, 696
TaiI	ACGT	5 cut(s)	90, 201, 382, 404, 597
TaqI	TCGA	1 cut(s)	15
TasI	AATT	9 cut(s)	102, 288, 384, 603, 745, 862, 872, 908, 932
TatI	WGTACW	1 cut(s)	951
TfiI	GAWTC	2 cut(s)	114, 764
Tru1I	TTAA	3 cut(s)	434, 803, 842
Tru9I	TTAA	3 cut(s)	434, 803, 842
TscAI	CASTG	3 cut(s)	36, 556, 786
TseI	GCWGC	2 cut(s)	34, 671
TspDTI	ATGAA	4 cut(s)	400, 440, 645, 885
TspRI	CASTG	3 cut(s)	36, 556, 786
XapI	RAATTY	2 cut(s)	745, 862
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.