Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004145

Physical Location & Seq

Genomic Coordinates Forward (+)

26966658 .. 26969470

Gene Structure 2813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G259300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGTGAAGCAGGAAAACGGTGATGAGGCTGAAGCGGTTGCTCATCCACTCTTGCAGGACCTCAAGTCCTTGGAAGGTCAAAATTCATCATCATCAGAAAAAGGCGCTTCATTTTCTGGGGCTGTCTTCAACATCTCAACCACAATGATTGGAGCTGGGATCATGTCAATTCCAGCAACCATCAAGGTCCTAGGCATAGTTCCTGGGTTCATTCTCATATTGTTGGTGGCCTTGGTTGTGGAGGTCACAGTGGAGTTCTTGCTCAGGTACACAAACTCAGGCGAGTCTTCTACCTATGCTGGCATGGTGGGTGAGTCTTTTGGACCCTGGGGTTCCATTGCTGTGCAAATTTGTGTCATCATCACCAATCTTGGCTGCCTCATCATTTATTTCATTATCATTGGGGATGTTCTATGTGGAAGTCAGTCTGGAGGAACCTTGCACTTTGGTATTTTACAAGAATGGTTTGGCGTCCACTGGTGGAATTCTCGTGCTTATGCGCTTCTCTTTATTGCACTCTTTGTGATGCTTCCATTAGTCTTGTCTCGCCGAGTAGATTCACTAAGGCACACTTCAGCAGTGTCCATTCTGCTAGCAGTGGTTTTTGTTGTCATATGCTCTGCAATGGCAATTTACGCATTGTGCAAAGGGAAGACTCAGAAACCGAGACTATTTCCGGATTGTGCACATCAAGTCTCAGTATTTGATCTTTTCACCACCATCCCAATTCTTGTGACAGGTTTTGGATTCCATGTCAATGTTCATCCAATTCGAGCAGAGCTTGGTAAACCTTCTGATATGAGATCAGCTGCTCGGATTTCTCTTGTGATCAGCATCATCATTTACTTTTCTATTGGTTTCTTTGGCTACCTATTGTTTGGCGATTCGGTAATGGATGACATACTAGTAAACTTTGATCAAAGTTCTGATTCCACAATTGGGCAGATAATCAATGACACTGTTCGACTGAGCTATGCAGTTCACCTCTTGTTTGTGTTTCCTATTATGAACTTTTCCTTAAGGGCCAACATAGATGAACTGCTTTTCCCAAATAAGCCTATTTTGGCCCAAAGCACCTCAAGATTTCTGTCCCTCACTTTTGTGCTGCTCTCCTTTACATACATTGTGGCAATAGCTATCCCAAGCATATGGTACTTCTTTCAGTTCATGGGATCCACTACCATAGTTTGCCTCTCATTTATATTCCCAGCTGCTCTCATTCTTAGGGATGGGCATGGTATATCAACAAGAAGGGACAAGATAATTGCAATATTGGTGATTATTTTGGCTGTGGTGACAAGCTCAATTGCAATGTCTACCACTCTGTACAATTCAGCTCAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

449

Amino Acids

48.87

Weight (kDa)

6.3

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40420 AT3G56200
fragaria_vesca	FvH4_7g25490 FvH4_7g25490 FvH4_7g25500
malus_domestica	MD01G1161200.v1.1 MD01G1161300.v1.1 MD06G1044000.v1.1 MD07G1229200.v1.1
prunus_persica	Prupe.2G259300_v2.0.a1 Prupe.2G259400_v2.0.a1
pyrus_communis	pycom01g17700 pycom01g17710 pycom07g20740
rosa_chinensis	RchiOBHm_Chr1g0371451 RchiOBHm_Chr1g0371471
rosa_laevigata	RLG00000026959 RLG00000026960
rosa_multiflora	Rmu_sc0000809.1_g000020 Rmu_sc0000809.1_g000021 Rmu_sc0029071.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285660 Rroxscaffold_4G00285670
rosa_rugosa	Rorug01G0364100 Rorug01G0364100
rosa_samantha	Rh1AG374300 Rh1AG374400 Rh1BG337800 Rh1CG351000 Rh1CG351100 Rh1DG368800
rosa_wichuraiana	Rw1G032920 Rw1G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1316
AccIII	TCCGGA	1 cut(s)	676
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	3 cut(s)	167, 1167, 1180
AcsI	RAATTY	3 cut(s)	82, 348, 484
AcuI	CTGAAG	2 cut(s)	51, 558
AcyI	GRCGYC	1 cut(s)	471
AfaI	GTAC	3 cut(s)	269, 1154, 1328
AfiI	CCNNNNNNNGG	1 cut(s)	939
AflII	CTTAAG	1 cut(s)	1018
AgsI	TTSAA	1 cut(s)	130
AhdI	GACNNNNNGTC	1 cut(s)	64
AhlI	ACTAGT	1 cut(s)	904
AjnI	CCWGG	2 cut(s)	202, 326
AleI	CACNNNNGTG	1 cut(s)	1100
AloI	GAACNNNNNNTCC	2 cut(s)	1029, 1061
AluBI	AGCT	9 cut(s)	155, 781, 809, 972, 1136, 1211, 1302, 1337, 1344
AluI	AGCT	9 cut(s)	155, 781, 809, 972, 1136, 1211, 1302, 1337, 1344
Alw21I	GWGCWC	1 cut(s)	688
Alw26I	GTCTC	3 cut(s)	549, 661, 700
Alw44I	GTGCAC	1 cut(s)	684
AlwI	GGATC	3 cut(s)	167, 1167, 1180
Aor13HI	TCCGGA	1 cut(s)	676
AoxI	GGCC	3 cut(s)	228, 1023, 1065
ApaLI	GTGCAC	1 cut(s)	684
ApeKI	GCWGC	4 cut(s)	375, 809, 1105, 1211
ApoI	RAATTY	3 cut(s)	82, 348, 484
AspA2I	CCTAGG	1 cut(s)	190
AspLEI	GCGC	2 cut(s)	107, 502
AspS9I	GGNCC	5 cut(s)	58, 187, 323, 1023, 1066
AsuHPI	GGTGA	8 cut(s)	16, 32, 323, 355, 706, 974, 1288, 1306
AsuNHI	GCTAGC	1 cut(s)	592
AvaII	GGWCC	3 cut(s)	58, 187, 323
AvrII	CCTAGG	1 cut(s)	190
BaeGI	GKGCMC	1 cut(s)	688
BamHI	GGATCC	1 cut(s)	1172
BauI	CACGAG	1 cut(s)	489
BbsI	GAAGAC	3 cut(s)	118, 279, 659
Bbv12I	GWGCWC	1 cut(s)	688
BbvI	GCAGC	4 cut(s)	362, 796, 1092, 1198
BccI	CCATC	3 cut(s)	188, 728, 1223
BciT130I	CCWGG	2 cut(s)	204, 328
BclI	TGATCA	2 cut(s)	828, 916
BcoDI	GTCTC	3 cut(s)	549, 661, 700
BcuI	ACTAGT	1 cut(s)	904
BfaI	CTAG	4 cut(s)	191, 593, 905, 1345
BfoI	RGCGCY	1 cut(s)	108
BfrI	CTTAAG	1 cut(s)	1018
BisI	GCNGC	4 cut(s)	376, 810, 1106, 1212
BlnI	CCTAGG	1 cut(s)	190
BlsI	GCNGC	4 cut(s)	377, 811, 1107, 1213
Bme1390I	CCNGG	2 cut(s)	204, 328
Bme18I	GGWCC	3 cut(s)	58, 187, 323
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmgT120I	GGNCC	5 cut(s)	58, 187, 323, 1023, 1066
BmiI	GGNNCC	4 cut(s)	325, 334, 436, 1174
BmrFI	CCNGG	2 cut(s)	204, 328
BmsI	GCATC	2 cut(s)	516, 843
BmtI	GCTAGC	1 cut(s)	596
BpiI	GAAGAC	3 cut(s)	118, 279, 659
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	263
BpuEI	CTTGAG	2 cut(s)	47, 1063
BsaBI	GATNNNNATC	1 cut(s)	833
BsaHI	GRCGYC	1 cut(s)	471
BsaJI	CCNNGG	6 cut(s)	69, 190, 203, 231, 326, 327
BsaWI	WCCGGW	1 cut(s)	676
Bsc4I	CCNNNNNNNGG	1 cut(s)	939
Bse1I	ACTGG	1 cut(s)	482
Bse3DI	GCAATG	3 cut(s)	336, 630, 1317
Bse8I	GATNNNNATC	1 cut(s)	833
BseAI	TCCGGA	1 cut(s)	676
BseBI	CCWGG	2 cut(s)	204, 328
BseDI	CCNNGG	6 cut(s)	69, 190, 203, 231, 326, 327
BseGI	GGATG	6 cut(s)	43, 412, 720, 763, 901, 1234
BseJI	GATNNNNATC	1 cut(s)	833
BseLI	CCNNNNNNNGG	1 cut(s)	939
BseMI	GCAATG	3 cut(s)	336, 630, 1317
BseMII	CTCAG	5 cut(s)	277, 291, 671, 711, 959
BseNI	ACTGG	1 cut(s)	482
BseSI	GKGCMC	1 cut(s)	688
BseXI	GCAGC	4 cut(s)	362, 796, 1092, 1198
BseYI	CCCAGC	2 cut(s)	155, 1207
BshFI	GGCC	3 cut(s)	230, 1025, 1067
BsiHKAI	GWGCWC	1 cut(s)	688
BsiSI	CCGG	1 cut(s)	677
BslFI	GGGAC	2 cut(s)	1075, 1268
BslI	CCNNNNNNNGG	1 cut(s)	939
BsmAI	GTCTC	3 cut(s)	549, 661, 700
BsmFI	GGGAC	2 cut(s)	1075, 1268
BsnI	GGCC	3 cut(s)	230, 1025, 1067
Bsp1286I	GDGCHC	1 cut(s)	688
Bsp13I	TCCGGA	1 cut(s)	676
Bsp1407I	TGTACA	1 cut(s)	1326
Bsp143I	GATC	6 cut(s)	159, 706, 803, 828, 916, 1172
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	3 cut(s)	230, 1025, 1067
BspCNI	CTCAG	5 cut(s)	276, 290, 670, 710, 960
BspEI	TCCGGA	1 cut(s)	676
BspLI	GGNNCC	4 cut(s)	325, 334, 436, 1174
BspOI	GCTAGC	1 cut(s)	596
BspPI	GGATC	3 cut(s)	167, 1167, 1180
BspTI	CTTAAG	1 cut(s)	1018
BsrDI	GCAATG	3 cut(s)	336, 630, 1317
BsrGI	TGTACA	1 cut(s)	1326
BsrI	ACTGG	1 cut(s)	482
BssECI	CCNNGG	6 cut(s)	69, 190, 203, 231, 326, 327
BssMI	GATC	6 cut(s)	159, 706, 803, 828, 916, 1172
BssNI	GRCGYC	1 cut(s)	471
BssSI	CACGAG	1 cut(s)	489
BssT1I	CCWWGG	3 cut(s)	69, 190, 231
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	2 cut(s)	204, 328
Bst4CI	ACNGT	3 cut(s)	20, 250, 961
BstACI	GRCGYC	1 cut(s)	471
BstAFI	CTTAAG	1 cut(s)	1018
BstAUI	TGTACA	1 cut(s)	1326
BstC8I	GCNNGC	2 cut(s)	301, 594
BstDEI	CTNAG	7 cut(s)	263, 277, 563, 657, 697, 968, 1223
BstF5I	GGATG	6 cut(s)	43, 412, 720, 763, 901, 1234
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	2 cut(s)	107, 502
BstKTI	GATC	6 cut(s)	162, 709, 806, 831, 919, 1175
BstMAI	GTCTC	3 cut(s)	549, 661, 700
BstMBI	GATC	6 cut(s)	159, 706, 803, 828, 916, 1172
BstMWI	GCNNNNNNNGC	1 cut(s)	635
BstNI	CCWGG	2 cut(s)	204, 328
BstSCI	CCNGG	2 cut(s)	202, 326
BstSLI	GKGCMC	1 cut(s)	688
BstV1I	GCAGC	4 cut(s)	362, 796, 1092, 1198
BstV2I	GAAGAC	3 cut(s)	118, 279, 659
BstX2I	RGATCY	1 cut(s)	1172
BstXI	CCANNNNNNTGG	1 cut(s)	1149
BstYI	RGATCY	1 cut(s)	1172
BsuRI	GGCC	3 cut(s)	230, 1025, 1067
BtsCI	GGATG	6 cut(s)	43, 412, 720, 763, 901, 1234
BtsI	GCAGTG	2 cut(s)	585, 603
BtsIMutI	CAGTG	5 cut(s)	255, 475, 585, 603, 957
Cac8I	GCNNGC	2 cut(s)	301, 594
CfoI	GCGC	2 cut(s)	107, 502
Cfr13I	GGNCC	5 cut(s)	58, 187, 323, 1023, 1066
CseI	GACGC	1 cut(s)	460
Csp6I	GTAC	3 cut(s)	268, 1153, 1327
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	5 cut(s)	163, 304, 752, 1168, 1235
CviQI	GTAC	3 cut(s)	268, 1153, 1327
DdeI	CTNAG	7 cut(s)	263, 277, 563, 657, 697, 968, 1223
DpnI	GATC	6 cut(s)	161, 708, 805, 830, 918, 1174
DpnII	GATC	6 cut(s)	159, 706, 803, 828, 916, 1172
DriI	GACNNNNNGTC	1 cut(s)	64
Eam1105I	GACNNNNNGTC	1 cut(s)	64
Eco130I	CCWWGG	3 cut(s)	69, 190, 231
Eco47I	GGWCC	3 cut(s)	58, 187, 323
Eco57I	CTGAAG	2 cut(s)	51, 558
EcoO109I	RGGNCCY	2 cut(s)	58, 187
EcoRI	GAATTC	1 cut(s)	484
EcoRII	CCWGG	2 cut(s)	202, 326
EcoT14I	CCWWGG	3 cut(s)	69, 190, 231
ErhI	CCWWGG	3 cut(s)	69, 190, 231
FaeI	CATG	5 cut(s)	166, 307, 755, 1171, 1238
FalI	AAGNNNNNCTT	2 cut(s)	556, 588
FaqI	GGGAC	2 cut(s)	1075, 1268
FatI	CATG	5 cut(s)	162, 303, 751, 1167, 1234
FauNDI	CATATG	2 cut(s)	614, 1148
FbaI	TGATCA	2 cut(s)	828, 916
FblI	GTMKAC	1 cut(s)	1316
Fnu4HI	GCNGC	4 cut(s)	376, 810, 1106, 1212
FokI	GGATG	6 cut(s)	30, 419, 707, 750, 908, 1241
Fsp4HI	GCNGC	4 cut(s)	376, 810, 1106, 1212
FspBI	CTAG	4 cut(s)	191, 593, 905, 1345
GlaI	GCGC	2 cut(s)	106, 501
GluI	GCNGC	4 cut(s)	376, 810, 1106, 1212
GsaI	CCCAGC	2 cut(s)	159, 1211
GsuI	CTGGAG	1 cut(s)	450
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	230, 1025, 1067
HapII	CCGG	1 cut(s)	677
HgaI	GACGC	1 cut(s)	460
HhaI	GCGC	2 cut(s)	107, 502
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	5 cut(s)	166, 307, 755, 1171, 1238
Hin6I	GCGC	2 cut(s)	105, 500
HinP1I	GCGC	2 cut(s)	105, 500
HinfI	GANTC	7 cut(s)	284, 314, 557, 655, 747, 884, 929
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	8 cut(s)	16, 32, 323, 355, 706, 974, 1288, 1306
Hpy166II	GTNNAC	7 cut(s)	270, 475, 686, 788, 910, 982, 1317
Hpy188I	TCNGA	5 cut(s)	97, 660, 796, 816, 928
Hpy188III	TCNNGA	3 cut(s)	429, 677, 1080
Hpy8I	GTNNAC	7 cut(s)	270, 475, 686, 788, 910, 982, 1317
HpyAV	CCTTC	3 cut(s)	68, 801, 1245
HpyCH4III	ACNGT	3 cut(s)	20, 250, 961
HpyF10VI	GCNNNNNNNGC	1 cut(s)	635
HpyF3I	CTNAG	7 cut(s)	263, 277, 563, 657, 697, 968, 1223
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	5 cut(s)	166, 307, 755, 1171, 1238
HspAI	GCGC	2 cut(s)	105, 500
Kpn2I	TCCGGA	1 cut(s)	676
Ksp22I	TGATCA	2 cut(s)	828, 916
Kzo9I	GATC	6 cut(s)	159, 706, 803, 828, 916, 1172
LmnI	GCTCC	1 cut(s)	152
Lsp1109I	GCAGC	4 cut(s)	362, 796, 1092, 1198
LweI	GCATC	2 cut(s)	516, 843
MaeI	CTAG	4 cut(s)	191, 593, 905, 1345
MaeIII	GTNAC	3 cut(s)	244, 733, 1294
MalI	GATC	6 cut(s)	161, 708, 805, 830, 918, 1174
MboI	GATC	6 cut(s)	159, 706, 803, 828, 916, 1172
MboII	GAAGA	3 cut(s)	118, 279, 664
MfeI	CAATTG	2 cut(s)	936, 1305
MflI	RGATCY	1 cut(s)	1172
MhlI	GDGCHC	1 cut(s)	688
MlyI	GAGTC	3 cut(s)	293, 323, 649
MnlI	CCTC	9 cut(s)	19, 71, 235, 389, 425, 995, 1087, 1103, 1202
MroI	TCCGGA	1 cut(s)	676
MseI	TTAA	1 cut(s)	1019
MslI	CAYNNNNRTG	3 cut(s)	341, 756, 1100
MspA1I	CMGCKG	2 cut(s)	809, 1211
MspCI	CTTAAG	1 cut(s)	1018
MspI	CCGG	1 cut(s)	677
MspR9I	CCNGG	2 cut(s)	204, 328
MunI	CAATTG	2 cut(s)	936, 1305
MvaI	CCWGG	2 cut(s)	204, 328
MwoI	GCNNNNNNNGC	1 cut(s)	635
NdeI	CATATG	2 cut(s)	614, 1148
NdeII	GATC	6 cut(s)	159, 706, 803, 828, 916, 1172
NheI	GCTAGC	1 cut(s)	592
NlaIII	CATG	5 cut(s)	166, 307, 755, 1171, 1238
NlaIV	GGNNCC	4 cut(s)	325, 334, 436, 1174
NmeAIII	GCCGAG	1 cut(s)	575
NmuCI	GTSAC	3 cut(s)	244, 733, 1294
OliI	CACNNNNGTG	1 cut(s)	1100
PasI	CCCWGGG	1 cut(s)	327
PfeI	GAWTC	4 cut(s)	557, 747, 884, 929
PkrI	GCNGC	4 cut(s)	377, 811, 1107, 1213
PleI	GAGTC	3 cut(s)	292, 322, 649
PpsI	GAGTC	3 cut(s)	292, 322, 649
PpuMI	RGGWCCY	2 cut(s)	58, 187
Psp5II	RGGWCCY	2 cut(s)	58, 187
Psp6I	CCWGG	2 cut(s)	202, 326
PspFI	CCCAGC	2 cut(s)	155, 1207
PspGI	CCWGG	2 cut(s)	202, 326
PspN4I	GGNNCC	4 cut(s)	325, 334, 436, 1174
PspPI	GGNCC	5 cut(s)	58, 187, 323, 1023, 1066
PspPPI	RGGWCCY	2 cut(s)	58, 187
PsuI	RGATCY	1 cut(s)	1172
PvuII	CAGCTG	2 cut(s)	809, 1211
RsaI	GTAC	3 cut(s)	269, 1154, 1328
RsaNI	GTAC	3 cut(s)	268, 1153, 1327
RseI	CAYNNNNRTG	3 cut(s)	341, 756, 1100
SaqAI	TTAA	1 cut(s)	1019
SatI	GCNGC	4 cut(s)	376, 810, 1106, 1212
Sau3AI	GATC	6 cut(s)	159, 706, 803, 828, 916, 1172
Sau96I	GGNCC	5 cut(s)	58, 187, 323, 1023, 1066
SchI	GAGTC	3 cut(s)	293, 323, 649
ScrFI	CCNGG	2 cut(s)	204, 328
SduI	GDGCHC	1 cut(s)	688
SfaNI	GCATC	2 cut(s)	516, 843
SinI	GGWCC	3 cut(s)	58, 187, 323
SmiMI	CAYNNNNRTG	3 cut(s)	341, 756, 1100
SmlI	CTYRAG	3 cut(s)	62, 1018, 1078
SmoI	CTYRAG	3 cut(s)	62, 1018, 1078
SpeI	ACTAGT	1 cut(s)	904
SsiI	CCGC	1 cut(s)	35
SspI	AATATT	1 cut(s)	1272
SspMI	CTAG	4 cut(s)	191, 593, 905, 1345
StyD4I	CCNGG	2 cut(s)	202, 326
StyI	CCWWGG	3 cut(s)	69, 190, 231
TaaI	ACNGT	3 cut(s)	20, 250, 961
TaqI	TCGA	2 cut(s)	772, 964
TatI	WGTACW	1 cut(s)	1326
TfiI	GAWTC	4 cut(s)	557, 747, 884, 929
Tru1I	TTAA	1 cut(s)	1019
Tru9I	TTAA	1 cut(s)	1019
TscAI	CASTG	5 cut(s)	255, 482, 585, 603, 964
TseFI	GTSAC	3 cut(s)	244, 733, 1294
TseI	GCWGC	4 cut(s)	375, 809, 1105, 1211
Tsp45I	GTSAC	3 cut(s)	244, 733, 1294
TspDTI	ATGAA	8 cut(s)	75, 99, 199, 382, 752, 1022, 1050, 1156
TspRI	CASTG	5 cut(s)	255, 482, 585, 603, 964
Vha464I	CTTAAG	1 cut(s)	1018
VneI	GTGCAC	1 cut(s)	684
VpaK11BI	GGWCC	3 cut(s)	58, 187, 323
XapI	RAATTY	3 cut(s)	82, 348, 484
XmaJI	CCTAGG	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	1316
XspI	CTAG	4 cut(s)	191, 593, 905, 1345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.