FvH4_7g25490

Amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004145
Physical Location & Seq
Forward (+)
19434186 .. 19436791
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25490.t1

Sequence Viewer

Length: 1335 bp
ATGAAGAACCAGCAAAACAACGACGAATCTGGGGAGATCGCTCATCCTCTTCTCCATGACTTCAAAGCCCTGGAAGGCCAAACTTCTTCATCATCATGCTCCATAGAAAAGGCTTCATTTTCCGGCGCCGTCTTCAACATCTCAACCACCATGATCGGAGCCGGAATCATGTCGATCCCAGCCACGATAAAAGTGCTGGGAATAATTCCTGGGCTCATAGCCATTGTAGTAGTGGCTGTCTTGACGGAGGTCACGGTGGAGTTCCTTTTAAGATACACAAACTCCGGCAAGTCAGAAACCTACGCCGGCATGGTGGGGGAGTCGTTTGGACCGTTGGGATCGATTGCTGTGCAAGTTTGTATCATCATAACCAACCTGGGTTGCCTCATCATTTTCTTCATCATCATCGGGGATGTGCTATGTGGGAGTACTCAATCGGAAGGAGCTTTGCACTTGGGCATTTTGCAAGAATTGTTTGGCATCCATTGGTGGAATTCTCGAGCTTATGCGCTTCTTCTCATTGCAATCTTTGTGATGCTTCCATTAGTCTCGTTACGCCGAGTTGATTCACTAAGGCACAGTTCAGCAGTGTCCGTTTTGTTAGCAGTGGTTTTTGTTGCCATAAGCTCTGCAATGGCGATTTACGCTTTGTGTGAAGGAAAGGCTCACAAATTGAGACTATTTCCGGACTTTGCGGTGATATCAATATTTGATGTGTTCACCAGTATCCCAGTTATTGTGACAAGTTTTGGAGTCCATGTCAATGTTCATCCAATTAGAGCAGAGCTCGGTGAGCCTTCTGATATGAAGTTAGCTGCTCGAATTTCTCTGCTGATCTGCGTCGTCATTTACAGCTCTATCGGTTTCTTTGGCTACCTATTGTTCGGGGACTCAATAATGGCTGACATGCTAGTAAACTTTGATCAAAACTCTGGCTCCACATTCGGGCAGTTGCTCAATATCATTGTTAGATCAAGCTACGCAATGCACCTCTTGCTCGTGTTCCCTGTCATGAACTTCTCTTTGAGGGCCAATATAGATGAGCTGCTCTTCCCACACAAACCTATTTTGGCCGAAAGCAACTCAAGATTTCTAATCCTCACTTGTATTTTGCTCTCATTTTCTTACTTTGTGGCAATAGCTATCCCAAACATATGGTACTTGTTTCAGTTTATGGGATCAACCACTGTGGTTTGCCTCTCATTTATATTCCCTGGTGCTCTCATTCTCAGGGATGGACAGGGGATATCAACAACAAAGGACAAGATAATAGCAATATTGGTGATAGTTTTGGCTGTGGTGACAAGCTCAGTTGCAATCTCCAGCAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

445

Amino Acids

48.0

Weight (kDa)

6.05

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 37 - 434 1.3e-50 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 38 - 284 2e-08 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AccIII TCCGGA 1 cut(s) 685
AciI CCGC 1 cut(s) 695
AclWI GGATC 3 cut(s) 169, 346, 1186
AcoI YGGCCR 1 cut(s) 1071
AcsI RAATTY 2 cut(s) 493, 822
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 2 cut(s) 430, 1160
AfiI CCNNNNNNNGG 1 cut(s) 945
AgsI TTSAA 2 cut(s) 64, 136
AjnI CCWGG 4 cut(s) 69, 208, 375, 1213
Alw21I GWGCWC 2 cut(s) 789, 1222
Alw26I GTCTC 2 cut(s) 553, 670
AlwI GGATC 3 cut(s) 169, 346, 1186
Ama87I CYCGRG 1 cut(s) 498
Aor13HI TCCGGA 1 cut(s) 685
AoxI GGCC 3 cut(s) 76, 1029, 1071
ApeKI GCWGC 2 cut(s) 815, 1045
ApoI RAATTY 2 cut(s) 493, 822
AspLEI GCGC 2 cut(s) 128, 511
AspS9I GGNCC 2 cut(s) 329, 1029
AsuHPI GGTGA 5 cut(s) 709, 712, 803, 1294, 1312
AvaI CYCGRG 1 cut(s) 498
AvaII GGWCC 1 cut(s) 329
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 2 cut(s) 216, 789
BauI CACGAG 1 cut(s) 998
BbsI GAAGAC 1 cut(s) 124
Bbv12I GWGCWC 2 cut(s) 789, 1222
BbvI GCAGC 2 cut(s) 802, 1032
BccI CCATC 1 cut(s) 1229
BceAI ACGGC 1 cut(s) 113
BcgI CGANNNNNNTGC 4 cut(s) 175, 209, 331, 365
BciT130I CCWGG 4 cut(s) 71, 210, 377, 1215
BciVI GTATCC 1 cut(s) 737
BclI TGATCA 1 cut(s) 922
BcoDI GTCTC 2 cut(s) 553, 670
BfaI CTAG 1 cut(s) 911
BfoI RGCGCY 1 cut(s) 129
BfuI GTATCC 1 cut(s) 737
BisI GCNGC 2 cut(s) 816, 1046
BlsI GCNGC 2 cut(s) 817, 1047
BmcAI AGTACT 1 cut(s) 430
Bme1390I CCNGG 4 cut(s) 71, 210, 377, 1215
Bme18I GGWCC 1 cut(s) 329
BmeT110I CYCGRG 1 cut(s) 498
BmgT120I GGNCC 2 cut(s) 329, 1029
BmiI GGNNCC 3 cut(s) 127, 160, 937
BmrFI CCNGG 4 cut(s) 71, 210, 377, 1215
BmrI ACTGGG 1 cut(s) 725
BmsI GCATC 2 cut(s) 489, 525
BmuI ACTGGG 1 cut(s) 725
BoxI GACNNNNGTC 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 124
BplI GAGNNNNNCTC 2 cut(s) 771, 803
BpmI CTGGAG 1 cut(s) 1306
BpuEI CTTGAG 1 cut(s) 1069
Bsa29I ATCGAT 1 cut(s) 341
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 4 cut(s) 69, 209, 376, 1213
BsaWI WCCGGW 1 cut(s) 685
BsaXI ACNNNNNCTCC 6 cut(s) 266, 296, 744, 774, 920, 950
Bsc4I CCNNNNNNNGG 1 cut(s) 945
Bse118I RCCGGY 1 cut(s) 305
Bse1I ACTGG 2 cut(s) 723, 731
Bse3DI GCAATG 3 cut(s) 519, 639, 990
BseAI TCCGGA 1 cut(s) 685
BseBI CCWGG 4 cut(s) 71, 210, 377, 1215
BseCI ATCGAT 1 cut(s) 341
BseDI CCNNGG 4 cut(s) 69, 209, 376, 1213
BseGI GGATG 5 cut(s) 43, 418, 480, 769, 1240
BseLI CCNNNNNNNGG 1 cut(s) 945
BseMI GCAATG 3 cut(s) 519, 639, 990
BseMII CTCAG 2 cut(s) 1243, 1323
BseNI ACTGG 2 cut(s) 723, 731
BseXI GCAGC 2 cut(s) 802, 1032
BseYI CCCAGC 2 cut(s) 178, 196
BshFI GGCC 3 cut(s) 78, 1031, 1073
BshNI GGYRCC 1 cut(s) 125
BshVI ATCGAT 1 cut(s) 341
BsiHKAI GWGCWC 2 cut(s) 789, 1222
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 5 cut(s) 123, 162, 285, 306, 686
BslFI GGGAC 1 cut(s) 902
BslI CCNNNNNNNGG 1 cut(s) 945
BsmAI GTCTC 2 cut(s) 553, 670
BsmFI GGGAC 1 cut(s) 902
BsnI GGCC 3 cut(s) 78, 1031, 1073
BsoBI CYCGRG 1 cut(s) 498
Bsp1286I GDGCHC 3 cut(s) 216, 789, 1222
Bsp13I TCCGGA 1 cut(s) 685
Bsp143I GATC 8 cut(s) 36, 153, 174, 338, 834, 922, 971, 1178
BspACI CCGC 1 cut(s) 695
BspANI GGCC 3 cut(s) 78, 1031, 1073
BspCNI CTCAG 2 cut(s) 1242, 1322
BspDI ATCGAT 1 cut(s) 341
BspEI TCCGGA 1 cut(s) 685
BspHI TCATGA 1 cut(s) 1011
BspLI GGNNCC 3 cut(s) 127, 160, 937
BspPI GGATC 3 cut(s) 169, 346, 1186
BspQI GCTCTTC 1 cut(s) 1055
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 3 cut(s) 519, 639, 990
BsrFI RCCGGY 1 cut(s) 305
BsrI ACTGG 2 cut(s) 723, 731
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 4 cut(s) 69, 209, 376, 1213
BssMI GATC 8 cut(s) 36, 153, 174, 338, 834, 922, 971, 1178
BssNI GRCGYC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 998
Bst2BI CACGAG 1 cut(s) 998
Bst2UI CCWGG 4 cut(s) 71, 210, 377, 1215
Bst4CI ACNGT 4 cut(s) 256, 333, 581, 1189
Bst6I CTCTTC 2 cut(s) 54, 1055
BstACI GRCGYC 1 cut(s) 126
BstAPI GCANNNNNTGC 1 cut(s) 994
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 3 cut(s) 572, 1229, 1309
BstF5I GGATG 5 cut(s) 43, 418, 480, 769, 1240
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 2 cut(s) 128, 511
BstKTI GATC 8 cut(s) 39, 156, 177, 341, 837, 925, 974, 1181
BstMAI GTCTC 2 cut(s) 553, 670
BstMBI GATC 8 cut(s) 36, 153, 174, 338, 834, 922, 971, 1178
BstMWI GCNNNNNNNGC 3 cut(s) 644, 793, 994
BstNI CCWGG 4 cut(s) 71, 210, 377, 1215
BstNSI RCATGY 1 cut(s) 910
BstPAI GACNNNNGTC 1 cut(s) 248
BstSCI CCNGG 4 cut(s) 69, 208, 375, 1213
BstV1I GCAGC 2 cut(s) 802, 1032
BstV2I GAAGAC 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 1155
Bsu15I ATCGAT 1 cut(s) 341
BsuI GTATCC 1 cut(s) 737
BsuRI GGCC 3 cut(s) 78, 1031, 1073
BsuTUI ATCGAT 1 cut(s) 341
BtsCI GGATG 5 cut(s) 43, 418, 480, 769, 1240
BtsI GCAGTG 2 cut(s) 594, 612
BtsIMutI CAGTG 3 cut(s) 594, 612, 1185
Cac8I GCNNGC 1 cut(s) 307
CciI TCATGA 1 cut(s) 1011
CfoI GCGC 2 cut(s) 128, 511
Cfr10I RCCGGY 1 cut(s) 305
Cfr13I GGNCC 2 cut(s) 329, 1029
ClaI ATCGAT 1 cut(s) 341
CseI GACGC 1 cut(s) 829
Csp6I GTAC 2 cut(s) 429, 1159
CspCI CAANNNNNGTGG 2 cut(s) 1170, 1205
CviAII CATG 8 cut(s) 56, 96, 151, 169, 310, 758, 907, 1012
CviQI GTAC 2 cut(s) 429, 1159
DdeI CTNAG 3 cut(s) 572, 1229, 1309
DinI GGCGCC 1 cut(s) 127
DpnI GATC 8 cut(s) 38, 155, 176, 340, 836, 924, 973, 1180
DpnII GATC 8 cut(s) 36, 153, 174, 338, 834, 922, 971, 1178
EaeI YGGCCR 1 cut(s) 1071
Eam1104I CTCTTC 2 cut(s) 54, 1055
EarI CTCTTC 2 cut(s) 54, 1055
Ecl136II GAGCTC 1 cut(s) 787
Eco24I GRGCYC 2 cut(s) 216, 789
Eco32I GATATC 2 cut(s) 702, 1248
Eco47I GGWCC 1 cut(s) 329
Eco53kI GAGCTC 1 cut(s) 787
Eco88I CYCGRG 1 cut(s) 498
EcoICRI GAGCTC 1 cut(s) 787
EcoRI GAATTC 1 cut(s) 493
EcoRII CCWGG 4 cut(s) 69, 208, 375, 1213
EcoRV GATATC 2 cut(s) 702, 1248
EcoT38I GRGCYC 2 cut(s) 216, 789
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
FaeI CATG 8 cut(s) 59, 99, 154, 172, 313, 761, 910, 1015
FaqI GGGAC 1 cut(s) 902
FatI CATG 8 cut(s) 55, 95, 150, 168, 309, 757, 906, 1011
FauNDI CATATG 1 cut(s) 1154
FbaI TGATCA 1 cut(s) 922
Fnu4HI GCNGC 2 cut(s) 816, 1046
FokI GGATG 5 cut(s) 30, 425, 467, 756, 1247
FriOI GRGCYC 2 cut(s) 216, 789
Fsp4HI GCNGC 2 cut(s) 816, 1046
FspBI CTAG 1 cut(s) 911
GlaI GCGC 2 cut(s) 127, 510
GluI GCNGC 2 cut(s) 816, 1046
GsaI CCCAGC 2 cut(s) 182, 200
GsuI CTGGAG 1 cut(s) 1306
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 3 cut(s) 78, 1031, 1073
HapII CCGG 5 cut(s) 123, 162, 285, 306, 686
HgaI GACGC 1 cut(s) 829
HhaI GCGC 2 cut(s) 128, 511
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 8 cut(s) 59, 99, 154, 172, 313, 761, 910, 1015
Hin6I GCGC 2 cut(s) 126, 509
HinP1I GCGC 2 cut(s) 126, 509
HinfI GANTC 6 cut(s) 26, 165, 320, 566, 753, 890
HpaII CCGG 5 cut(s) 123, 162, 285, 306, 686
HphI GGTGA 5 cut(s) 709, 712, 803, 1294, 1312
Hpy166II GTNNAC 2 cut(s) 720, 916
Hpy188I TCNGA 4 cut(s) 158, 295, 439, 802
Hpy188III TCNNGA 5 cut(s) 241, 498, 686, 1012, 1086
Hpy8I GTNNAC 2 cut(s) 720, 916
Hpy99I CGWCG 2 cut(s) 26, 845
HpyAV CCTTC 4 cut(s) 68, 434, 650, 807
HpyCH4III ACNGT 4 cut(s) 256, 333, 581, 1189
HpyCH4V TGCA 7 cut(s) 352, 451, 466, 524, 632, 988, 1316
HpyF10VI GCNNNNNNNGC 3 cut(s) 644, 793, 994
HpyF3I CTNAG 3 cut(s) 572, 1229, 1309
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 8 cut(s) 59, 99, 154, 172, 313, 761, 910, 1015
HspAI GCGC 2 cut(s) 126, 509
KasI GGCGCC 1 cut(s) 125
Kpn2I TCCGGA 1 cut(s) 685
KroI GCCGGC 1 cut(s) 305
KroNI GCCGGC 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 922
Kzo9I GATC 8 cut(s) 36, 153, 174, 338, 834, 922, 971, 1178
LguI GCTCTTC 1 cut(s) 1055
LmnI GCTCC 4 cut(s) 104, 158, 443, 941
Lsp1109I GCAGC 2 cut(s) 802, 1032
LweI GCATC 2 cut(s) 489, 525
MaeI CTAG 1 cut(s) 911
MaeIII GTNAC 4 cut(s) 250, 552, 739, 1300
MalI GATC 8 cut(s) 38, 155, 176, 340, 836, 924, 973, 1180
MboI GATC 8 cut(s) 36, 153, 174, 338, 834, 922, 971, 1178
MboII GAAGA 7 cut(s) 16, 41, 78, 124, 388, 506, 1042
MhlI GDGCHC 3 cut(s) 216, 789, 1222
MluCI AATT 7 cut(s) 204, 470, 493, 671, 774, 822, 1327
Mly113I GGCGCC 1 cut(s) 126
MlyI GAGTC 3 cut(s) 329, 762, 884
MnlI CCTC 7 cut(s) 57, 241, 395, 1001, 1020, 1109, 1208
MroI TCCGGA 1 cut(s) 685
MroNI GCCGGC 1 cut(s) 305
MseI TTAA 1 cut(s) 269
MslI CAYNNNNRTG 2 cut(s) 94, 762
MspI CCGG 5 cut(s) 123, 162, 285, 306, 686
MspR9I CCNGG 4 cut(s) 71, 210, 377, 1215
MvaI CCWGG 4 cut(s) 71, 210, 377, 1215
MwoI GCNNNNNNNGC 3 cut(s) 644, 793, 994
NaeI GCCGGC 1 cut(s) 307
NarI GGCGCC 1 cut(s) 126
NdeI CATATG 1 cut(s) 1154
NdeII GATC 8 cut(s) 36, 153, 174, 338, 834, 922, 971, 1178
NgoMIV GCCGGC 1 cut(s) 305
NlaIII CATG 8 cut(s) 59, 99, 154, 172, 313, 761, 910, 1015
NlaIV GGNNCC 3 cut(s) 127, 160, 937
NmeAIII GCCGAG 1 cut(s) 584
NmuCI GTSAC 3 cut(s) 250, 739, 1300
NspI RCATGY 1 cut(s) 910
PaeR7I CTCGAG 1 cut(s) 498
PagI TCATGA 1 cut(s) 1011
PciSI GCTCTTC 1 cut(s) 1055
PcsI WCGNNNNNNNCGW 1 cut(s) 329
PdiI GCCGGC 1 cut(s) 307
PfeI GAWTC 3 cut(s) 26, 165, 566
PkrI GCNGC 2 cut(s) 817, 1047
PleI GAGTC 3 cut(s) 328, 761, 884
PluTI GGCGCC 1 cut(s) 129
PpsI GAGTC 3 cut(s) 328, 761, 884
PshAI GACNNNNGTC 1 cut(s) 248
Psp124BI GAGCTC 1 cut(s) 789
Psp6I CCWGG 4 cut(s) 69, 208, 375, 1213
PspFI CCCAGC 2 cut(s) 178, 196
PspGI CCWGG 4 cut(s) 69, 208, 375, 1213
PspN4I GGNNCC 3 cut(s) 127, 160, 937
PspPI GGNCC 2 cut(s) 329, 1029
RsaI GTAC 2 cut(s) 430, 1160
RsaNI GTAC 2 cut(s) 429, 1159
RseI CAYNNNNRTG 2 cut(s) 94, 762
SacI GAGCTC 1 cut(s) 789
SapI GCTCTTC 1 cut(s) 1055
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 2 cut(s) 816, 1046
Sau3AI GATC 8 cut(s) 36, 153, 174, 338, 834, 922, 971, 1178
Sau96I GGNCC 2 cut(s) 329, 1029
ScaI AGTACT 1 cut(s) 430
SchI GAGTC 3 cut(s) 329, 762, 884
ScrFI CCNGG 4 cut(s) 71, 210, 377, 1215
SduI GDGCHC 3 cut(s) 216, 789, 1222
SfaNI GCATC 2 cut(s) 489, 525
SfoI GGCGCC 1 cut(s) 127
Sfr274I CTCGAG 1 cut(s) 498
SinI GGWCC 1 cut(s) 329
SlaI CTCGAG 1 cut(s) 498
SmiMI CAYNNNNRTG 2 cut(s) 94, 762
SmlI CTYRAG 2 cut(s) 498, 1084
SmoI CTYRAG 2 cut(s) 498, 1084
Sse9I AATT 7 cut(s) 204, 470, 493, 671, 774, 822, 1327
SsiI CCGC 1 cut(s) 695
SspDI GGCGCC 1 cut(s) 125
SspI AATATT 2 cut(s) 708, 1278
SspMI CTAG 1 cut(s) 911
SstI GAGCTC 1 cut(s) 789
StyD4I CCNGG 4 cut(s) 69, 208, 375, 1213
TaaI ACNGT 4 cut(s) 256, 333, 581, 1189
TaqI TCGA 4 cut(s) 173, 341, 499, 820
TasI AATT 7 cut(s) 204, 470, 493, 671, 774, 822, 1327
TatI WGTACW 1 cut(s) 428
TfiI GAWTC 3 cut(s) 26, 165, 566
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 3 cut(s) 594, 612, 1192
TseFI GTSAC 3 cut(s) 250, 739, 1300
TseI GCWGC 2 cut(s) 815, 1045
Tsp45I GTSAC 3 cut(s) 250, 739, 1300
TspDTI ATGAA 7 cut(s) 17, 78, 105, 388, 758, 821, 1028
TspGWI ACGGA 2 cut(s) 260, 583
TspRI CASTG 3 cut(s) 594, 612, 1192
VpaK11BI GGWCC 1 cut(s) 329
XapI RAATTY 2 cut(s) 493, 822
XceI RCATGY 1 cut(s) 910
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XhoI CTCGAG 1 cut(s) 498
XspI CTAG 1 cut(s) 911
ZrmI AGTACT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.