Rorug01G0364100

sodium-coupled neutral amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004145
Physical Location & Seq
Reverse (-)
47902155 .. 47905589
3435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0364100.1

Sequence Viewer

Length: 1047 bp
ATGGAATCGGAGCCATTCGAGAGAGAAAAGCACGTGACTTTTCTGGAGATGATGTACCGGCTCCTCCCACACCAGTACCAGACCCAAGAGATCAACCGCCTCACTCTCGCCTACTTCGTCGTCTCCGGCCTCGACCTCCTCCGCGCTCTCCACCGCATTGACAAGGACGCAGTTGCCGATTGGGTTCTGTCACTCCAAGCTCGCCCGAGTGACAGCGACCAAGTCAACAATGGGCAATTCTATGGGTTTTATGGTTCCAGAAGTTCTCAGTTTTCTCCTCAAGATGATAATAATGGGGCTTCGAGTTCCGGTATCAGTAACTTGGCAAGCACGTATTGTGCTTTGGCCATACTGAAAATTATCGGCTATGACTTGTCTAGTATCGACTCTGAGTCGTTATTGAAGTCGATGAGGAACCTTCAACAGCCTGATGGGAGTTTTATGCCTATACATACAGGGGCGGAGACTGATCTTCGATTCGTTTATTGTGCTGCTGCGATTTGTCATATGTTGGGAAATTGGAGTGGCATGGACAAGGAGAGAGCCAAGGAGTACATAATAAATTGCCAGTCATATGATGGTGGATTTGGGTTGACTCCTGGTGCAGAATCTCATGGTGGTGCAATTTATTGTGGTATTACATCTCTCCGGTTGATGGGATTCCTTGAAGAGGATGTACTTTCCAAAAATGTGTCATCCTCCATGGTAAATGTGCCTCTGCTGCTGGTTTGGTGCCTACAGAGGCAGGCAGCTGATGGTGGATTCCAGGGTAGACCGAACAAGCCTAGTGACACATGTTATGCATTTTGGATTGTATCAGTTTTGAAGATTTTAGGGGGGCACAAATTGATTGACCAGAAAGCTTTACGTGGATTCTTAATAACTTGTCAGTCTCAGTATGGTGGTTTCAGCAAATTTCCAGGGGACCTGCCAGATCTGTATCACTCTTATTATGGGTTTACAGCATTCAGCCTTCTGGAAGAACCTGGCCTCAATCCACTCTGTGTTGAGCTAGGAATGACGGATCTTGCTGCCATAGGAATCTAA

Protein Analysis

348

Amino Acids

38.47

Weight (kDa)

5.17

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltrans PF00432 6 - 335 5e-100 Prenyltransferase alpha-alpha toroid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 936
AccB1I GGYRCC 1 cut(s) 732
AccI GTMKAC 1 cut(s) 772
AccII CGCG 1 cut(s) 144
AciI CCGC 4 cut(s) 97, 142, 154, 461
AclWI GGATC 1 cut(s) 1032
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 1 cut(s) 914
AcvI CACGTG 1 cut(s) 34
AdeI CACNNNGTG 1 cut(s) 1004
AfaI GTAC 4 cut(s) 56, 77, 554, 678
AfiI CCNNNNNNNGG 2 cut(s) 655, 670
AflIII ACRYGT 1 cut(s) 794
AgsI TTSAA 4 cut(s) 403, 422, 668, 826
AhdI GACNNNNNGTC 1 cut(s) 391
AjnI CCWGG 4 cut(s) 598, 765, 919, 985
AluBI AGCT 4 cut(s) 200, 752, 863, 1012
AluI AGCT 4 cut(s) 200, 752, 863, 1012
Alw26I GTCTC 3 cut(s) 127, 458, 897
AlwI GGATC 1 cut(s) 1032
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 3 cut(s) 127, 345, 988
ApeKI GCWGC 5 cut(s) 491, 494, 721, 749, 1031
ApoI RAATTY 1 cut(s) 914
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 925
AvaI CYCGRG 1 cut(s) 205
AvaII GGWCC 1 cut(s) 925
BaeGI GKGCMC 1 cut(s) 843
BaeI ACNNNNGTAYC 2 cut(s) 59, 92
BalI TGGCCA 1 cut(s) 347
BanI GGYRCC 1 cut(s) 732
BarI GAAGNNNNNNTAC 2 cut(s) 660, 692
BbrPI CACGTG 1 cut(s) 34
BbvI GCAGC 5 cut(s) 478, 481, 708, 761, 1018
BccI CCATC 4 cut(s) 425, 572, 649, 749
BciT130I CCWGG 4 cut(s) 600, 767, 921, 987
BcoDI GTCTC 3 cut(s) 127, 458, 897
BfaI CTAG 3 cut(s) 378, 786, 1013
BfmI CTRYAG 1 cut(s) 737
BfuAI ACCTGC 1 cut(s) 936
BglII AGATCT 1 cut(s) 934
BisI GCNGC 5 cut(s) 492, 495, 722, 750, 1032
BlsI GCNGC 5 cut(s) 493, 496, 723, 751, 1033
Bme1390I CCNGG 4 cut(s) 600, 767, 921, 987
Bme18I GGWCC 1 cut(s) 925
BmeRI GACNNNNNGTC 1 cut(s) 391
BmeT110I CYCGRG 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 925
BmiI GGNNCC 6 cut(s) 12, 62, 256, 416, 734, 926
BmrFI CCNGG 4 cut(s) 600, 767, 921, 987
BpmI CTGGAG 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 264
BsaAI YACGTR 3 cut(s) 34, 333, 869
BsaBI GATNNNNATC 1 cut(s) 939
BsaJI CCNNGG 4 cut(s) 546, 702, 766, 920
BsaWI WCCGGW 2 cut(s) 308, 648
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 2 cut(s) 655, 670
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 2 cut(s) 73, 568
Bse8I GATNNNNATC 1 cut(s) 939
BseBI CCWGG 4 cut(s) 600, 767, 921, 987
BseDI CCNNGG 4 cut(s) 546, 702, 766, 920
BseGI GGATG 2 cut(s) 679, 695
BseJI GATNNNNATC 1 cut(s) 939
BseLI CCNNNNNNNGG 2 cut(s) 655, 670
BseMII CTCAG 3 cut(s) 281, 381, 908
BseNI ACTGG 2 cut(s) 73, 568
BseRI GAGGAG 3 cut(s) 53, 128, 267
BseSI GKGCMC 1 cut(s) 843
BseXI GCAGC 5 cut(s) 478, 481, 708, 761, 1018
BsgI GTGCAG 1 cut(s) 624
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 3 cut(s) 129, 347, 990
BshNI GGYRCC 1 cut(s) 732
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 4 cut(s) 58, 126, 309, 649
BslFI GGGAC 1 cut(s) 938
BslI CCNNNNNNNGG 2 cut(s) 655, 670
BsmAI GTCTC 3 cut(s) 127, 458, 897
BsmBI CGTCTC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 938
BsmI GAATGC 1 cut(s) 965
BsnI GGCC 3 cut(s) 129, 347, 990
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 843
Bsp143I GATC 4 cut(s) 90, 469, 934, 1024
Bsp19I CCATGG 1 cut(s) 702
BspACI CCGC 4 cut(s) 97, 142, 154, 461
BspANI GGCC 3 cut(s) 129, 347, 990
BspCNI CTCAG 3 cut(s) 280, 382, 907
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 6 cut(s) 12, 62, 256, 416, 734, 926
BspMI ACCTGC 1 cut(s) 936
BspPI GGATC 1 cut(s) 1032
BspT107I GGYRCC 1 cut(s) 732
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 2 cut(s) 73, 568
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 4 cut(s) 546, 702, 766, 920
BssMI GATC 4 cut(s) 90, 469, 934, 1024
BssT1I CCWWGG 2 cut(s) 546, 702
Bst2UI CCWGG 4 cut(s) 600, 767, 921, 987
Bst6I CTCTTC 1 cut(s) 663
BstBAI YACGTR 3 cut(s) 34, 333, 869
BstC8I GCNNGC 3 cut(s) 202, 328, 747
BstDEI CTNAG 3 cut(s) 267, 390, 894
BstDSI CCRYGG 1 cut(s) 702
BstENI CCTNNNNNAGG 1 cut(s) 668
BstF5I GGATG 2 cut(s) 679, 695
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 4 cut(s) 93, 472, 937, 1027
BstMAI GTCTC 3 cut(s) 127, 458, 897
BstMBI GATC 4 cut(s) 90, 469, 934, 1024
BstMWI GCNNNNNNNGC 1 cut(s) 721
BstNI CCWGG 4 cut(s) 600, 767, 921, 987
BstNSI RCATGY 1 cut(s) 798
BstSCI CCNGG 4 cut(s) 598, 765, 919, 985
BstSFI CTRYAG 1 cut(s) 737
BstSLI GKGCMC 1 cut(s) 843
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 5 cut(s) 478, 481, 708, 761, 1018
BstX2I RGATCY 2 cut(s) 934, 1024
BstYI RGATCY 2 cut(s) 934, 1024
BsuRI GGCC 3 cut(s) 129, 347, 990
BtgI CCRYGG 1 cut(s) 702
BtsCI GGATG 2 cut(s) 679, 695
BveI ACCTGC 1 cut(s) 936
Cac8I GCNNGC 3 cut(s) 202, 328, 747
CfoI GCGC 1 cut(s) 146
Cfr10I RCCGGY 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 925
CseI GACGC 1 cut(s) 176
Csp6I GTAC 4 cut(s) 55, 76, 553, 677
CviAII CATG 4 cut(s) 529, 614, 703, 795
CviQI GTAC 4 cut(s) 55, 76, 553, 677
DdeI CTNAG 3 cut(s) 267, 390, 894
DpnI GATC 4 cut(s) 92, 471, 936, 1026
DpnII GATC 4 cut(s) 90, 469, 934, 1024
DraIII CACNNNGTG 1 cut(s) 1004
DriI GACNNNNNGTC 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 663
Eam1105I GACNNNNNGTC 1 cut(s) 391
EarI CTCTTC 1 cut(s) 663
EciI GGCGGA 1 cut(s) 476
Eco130I CCWWGG 2 cut(s) 546, 702
Eco47I GGWCC 1 cut(s) 925
Eco72I CACGTG 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 668
EcoO109I RGGNCCY 1 cut(s) 925
EcoRII CCWGG 4 cut(s) 598, 765, 919, 985
EcoT14I CCWWGG 2 cut(s) 546, 702
EcoT22I ATGCAT 1 cut(s) 805
ErhI CCWWGG 2 cut(s) 546, 702
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 4 cut(s) 532, 617, 706, 798
FaqI GGGAC 1 cut(s) 938
FatI CATG 4 cut(s) 528, 613, 702, 794
FauNDI CATATG 2 cut(s) 507, 574
FblI GTMKAC 1 cut(s) 772
Fnu4HI GCNGC 5 cut(s) 492, 495, 722, 750, 1032
FokI GGATG 2 cut(s) 682, 686
Fsp4HI GCNGC 5 cut(s) 492, 495, 722, 750, 1032
FspBI CTAG 3 cut(s) 378, 786, 1013
GlaI GCGC 1 cut(s) 145
GluI GCNGC 5 cut(s) 492, 495, 722, 750, 1032
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 3 cut(s) 129, 347, 990
HapII CCGG 4 cut(s) 58, 126, 309, 649
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 146
Hin1II CATG 4 cut(s) 532, 617, 706, 798
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HincII GTYRAC 2 cut(s) 226, 594
HindII GTYRAC 2 cut(s) 226, 594
HindIII AAGCTT 1 cut(s) 861
HpaII CCGG 4 cut(s) 58, 126, 309, 649
Hpy166II GTNNAC 4 cut(s) 226, 594, 773, 960
Hpy188I TCNGA 2 cut(s) 10, 391
Hpy188III TCNNGA 5 cut(s) 19, 44, 258, 281, 977
Hpy8I GTNNAC 4 cut(s) 226, 594, 773, 960
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 428, 983
HpyCH4IV ACGT 3 cut(s) 33, 332, 868
HpyCH4V TGCA 3 cut(s) 605, 623, 803
HpyF10VI GCNNNNNNNGC 1 cut(s) 721
HpyF3I CTNAG 3 cut(s) 267, 390, 894
HpySE526I ACGT 3 cut(s) 33, 332, 868
Hsp92II CATG 4 cut(s) 532, 617, 706, 798
HspAI GCGC 1 cut(s) 144
Kzo9I GATC 4 cut(s) 90, 469, 934, 1024
LmnI GCTCC 2 cut(s) 10, 66
Lsp1109I GCAGC 5 cut(s) 478, 481, 708, 761, 1018
MaeI CTAG 3 cut(s) 378, 786, 1013
MaeII ACGT 3 cut(s) 33, 332, 868
MaeIII GTNAC 5 cut(s) 34, 189, 209, 317, 788
MalI GATC 4 cut(s) 92, 471, 936, 1026
MboI GATC 4 cut(s) 90, 469, 934, 1024
MboII GAAGA 4 cut(s) 464, 680, 838, 992
MflI RGATCY 2 cut(s) 934, 1024
MhlI GDGCHC 1 cut(s) 843
MlsI TGGCCA 1 cut(s) 347
MluCI AATT 7 cut(s) 236, 357, 517, 562, 624, 845, 914
MluNI TGGCCA 1 cut(s) 347
MlyI GAGTC 3 cut(s) 380, 401, 589
Mox20I TGGCCA 1 cut(s) 347
Mph1103I ATGCAT 1 cut(s) 805
MscI TGGCCA 1 cut(s) 347
MseI TTAA 1 cut(s) 878
MslI CAYNNNNRTG 1 cut(s) 618
Msp20I TGGCCA 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 4 cut(s) 58, 126, 309, 649
MspR9I CCNGG 4 cut(s) 600, 767, 921, 987
Mva1269I GAATGC 1 cut(s) 965
MvaI CCWGG 4 cut(s) 600, 767, 921, 987
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 721
NcoI CCATGG 1 cut(s) 702
NdeI CATATG 2 cut(s) 507, 574
NdeII GATC 4 cut(s) 90, 469, 934, 1024
NlaIII CATG 4 cut(s) 532, 617, 706, 798
NlaIV GGNNCC 6 cut(s) 12, 62, 256, 416, 734, 926
NmuCI GTSAC 4 cut(s) 34, 189, 209, 788
NsiI ATGCAT 1 cut(s) 805
NspI RCATGY 1 cut(s) 798
PciI ACATGT 1 cut(s) 794
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 174
PctI GAATGC 1 cut(s) 965
PfeI GAWTC 7 cut(s) 5, 477, 608, 660, 762, 873, 1041
PflFI GACNNNGTC 1 cut(s) 221
PkrI GCNGC 5 cut(s) 493, 496, 723, 751, 1033
PleI GAGTC 3 cut(s) 380, 400, 589
PmaCI CACGTG 1 cut(s) 34
PmlI CACGTG 1 cut(s) 34
PpsI GAGTC 3 cut(s) 380, 400, 589
Ppu21I YACGTR 3 cut(s) 34, 333, 869
PpuMI RGGWCCY 1 cut(s) 925
PscI ACATGT 1 cut(s) 794
Psp5II RGGWCCY 1 cut(s) 925
Psp6I CCWGG 4 cut(s) 598, 765, 919, 985
PspCI CACGTG 1 cut(s) 34
PspGI CCWGG 4 cut(s) 598, 765, 919, 985
PspN4I GGNNCC 6 cut(s) 12, 62, 256, 416, 734, 926
PspPI GGNCC 1 cut(s) 925
PspPPI RGGWCCY 1 cut(s) 925
PsuI RGATCY 2 cut(s) 934, 1024
PsyI GACNNNGTC 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 4 cut(s) 56, 77, 554, 678
RsaNI GTAC 4 cut(s) 55, 76, 553, 677
RseI CAYNNNNRTG 1 cut(s) 618
SaqAI TTAA 1 cut(s) 878
SatI GCNGC 5 cut(s) 492, 495, 722, 750, 1032
Sau3AI GATC 4 cut(s) 90, 469, 934, 1024
Sau96I GGNCC 1 cut(s) 925
SchI GAGTC 3 cut(s) 380, 401, 589
ScrFI CCNGG 4 cut(s) 600, 767, 921, 987
SduI GDGCHC 1 cut(s) 843
SfcI CTRYAG 1 cut(s) 737
SinI GGWCC 1 cut(s) 925
SmiMI CAYNNNNRTG 1 cut(s) 618
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
Sse9I AATT 7 cut(s) 236, 357, 517, 562, 624, 845, 914
SsiI CCGC 4 cut(s) 97, 142, 154, 461
SspMI CTAG 3 cut(s) 378, 786, 1013
StyD4I CCNGG 4 cut(s) 598, 765, 919, 985
StyI CCWWGG 2 cut(s) 546, 702
TaiI ACGT 3 cut(s) 36, 335, 871
TaqI TCGA 6 cut(s) 18, 132, 302, 384, 407, 475
TaqII GACCGA 1 cut(s) 790
TasI AATT 7 cut(s) 236, 357, 517, 562, 624, 845, 914
TatI WGTACW 2 cut(s) 552, 676
TfiI GAWTC 7 cut(s) 5, 477, 608, 660, 762, 873, 1041
Tru1I TTAA 1 cut(s) 878
Tru9I TTAA 1 cut(s) 878
TseFI GTSAC 4 cut(s) 34, 189, 209, 788
TseI GCWGC 5 cut(s) 491, 494, 721, 749, 1031
Tsp45I GTSAC 4 cut(s) 34, 189, 209, 788
TspGWI ACGGA 1 cut(s) 1037
Tth111I GACNNNGTC 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 925
XagI CCTNNNNNAGG 1 cut(s) 668
XapI RAATTY 1 cut(s) 914
XceI RCATGY 1 cut(s) 798
XcmI CCANNNNNNNNNTGG 2 cut(s) 227, 575
XmiI GTMKAC 1 cut(s) 772
XspI CTAG 3 cut(s) 378, 786, 1013
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.