MD01G1161300.v1.1

sodium-coupled neutral amino acid transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
26661965 .. 26664885
2921 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1161300.v1.1.491

Sequence Viewer

Length: 1308 bp
ATGTCGCCGGCAACCGGAGCTCACGTGCCACTTCTGTCGGACAGAAAGCCGGTGAGGCGGGGGTCAGTGTCCGGGGCGGTGTTCAACGTGTCCACGAGCATAATTGGAGCCGGAATTATGTCCATACCGGCAACTCTCAAGGTGCTCGGTGTGATACCGGCTTTTGTGCTTATTGTGATCATTGCTTTGCTGGCCGACGTCTCGGTGGAGTTCCTGATGAGGTTCACGCATTCCGGCGAATCCACGACGTATTCCGGCGTTATGAGGGAGTCTTTTGGGCAGGTGGGATCGGTTGCCGCACAAATATGTGTCATGATCACTAATCTTGGGTGCTTAATTATGTACCAGATAATAATTGGGGATGTTCTATCTGGAAATGGGTCTGCAGGAGAAGGGCATTCAGGTGTTCTGCAAGAGTGGTTTGGAAGTCATTGGTGGAACTCCCGTGATATTGCCCTCCTATTCACACTTATTTTCATTTTCCTGCCATTGGTTTTGTTAAAGCGAGTAGAATCTCTAAGGTTCAGTTCAGCCATATCAGTTCTTCTTGCAGTGGTTTTTGTTGGCATAAGTTCAGCCATGGCAATCTATGCAATCTTTGAAGGGAAAACCAACACCCCAAGATTGGTACCAAGCTTGGGCAAACAAACCTCCTTCTTTGACCTTTTCACTGCTGTCCCAGTCATTGTCACAGCCTTCACTTTTCACTTCAATGTGCACCCAATTGGGTTTGAGCTTGGGAAGCCGTCGGATATGATATCAGCGGTCAGGATCTCACTGGTGCTATGTGCAGCCATCTACTTCTCCATTGGACTGTTTGGGTACCTTTTGTTTGGGGATGCAATCATGGCTGACATACTTGTGAACTTTGACAGAAGCTCGGATTCAGCAATGGGGGCAGTGCTGAATGATGTGGTTCGATTAAGCTATGCCCTCCATCTGATGTTGGTTTTTCCTCTCTTGAACTTTTCTCTGAGGGTAAATTTGGATGAACTGCTTTTCCCCAAAAAGCCGCTTTTGGCCACAGATACTAGGAGATTTCTGCTTCTCACTCTTGGCCTGCTGGTTTTCTCTTACCTGGCTGCAATTGCCTTCCCAAACATTTGGTACGTTTTTCAGTTTTTGGGATCAACTTCTGCCGTCTGCCTTGCCTTCATTTTTCCGGGTGCAATTGTTCTAAGGGATGTACATGGCATATCTACAAGAAGGGACAGGACCATGGCAACTGTAATGGTAGTCCTGGCAGTAGTAACAAGTGCAACTGCCATTTCCACCAATGTATATAACATTTTTGGGAACAAGTCCTAG

Protein Analysis

436

Amino Acids

47.06

Weight (kDa)

8.88

Isoelectric Point (pI)

27.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 20 - 409 2.4e-48 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 22 - 419 9.8e-07 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 271
AatII GACGTC 1 cut(s) 201
Acc36I ACCTGC 1 cut(s) 271
Acc65I GGTACC 2 cut(s) 628, 822
AccB1I GGYRCC 2 cut(s) 628, 822
AciI CCGC 5 cut(s) 58, 77, 297, 764, 1013
AclWI GGATC 3 cut(s) 295, 779, 1135
AcoI YGGCCR 2 cut(s) 192, 1020
AcsI RAATTY 1 cut(s) 982
AcvI CACGTG 1 cut(s) 25
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 5 cut(s) 344, 630, 824, 1109, 1188
AfiI CCNNNNNNNGG 4 cut(s) 14, 490, 625, 638
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 4 cut(s) 85, 602, 712, 964
AjnI CCWGG 2 cut(s) 1077, 1239
AloI GAACNNNNNNTCC 2 cut(s) 984, 1016
AluBI AGCT 5 cut(s) 20, 636, 736, 879, 927
AluI AGCT 5 cut(s) 20, 636, 736, 879, 927
Alw21I GWGCWC 3 cut(s) 22, 147, 720
Alw26I GTCTC 1 cut(s) 205
Alw44I GTGCAC 1 cut(s) 716
AlwI GGATC 3 cut(s) 295, 779, 1135
AoxI GGCC 3 cut(s) 192, 1020, 1057
ApaLI GTGCAC 1 cut(s) 716
ApeKI GCWGC 2 cut(s) 791, 1082
ApoI RAATTY 1 cut(s) 982
Asp718I GGTACC 2 cut(s) 628, 822
AspS9I GGNCC 1 cut(s) 1215
AsuC2I CCSGG 2 cut(s) 73, 1164
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 1215
BaeGI GKGCMC 1 cut(s) 720
BalI TGGCCA 1 cut(s) 1022
BanI GGYRCC 2 cut(s) 628, 822
BanII GRGCYC 1 cut(s) 22
BauI CACGAG 1 cut(s) 94
BbrPI CACGTG 1 cut(s) 25
Bbv12I GWGCWC 3 cut(s) 22, 147, 720
BbvI GCAGC 2 cut(s) 803, 1069
BccI CCATC 2 cut(s) 803, 945
BceAI ACGGC 2 cut(s) 730, 1124
BciT130I CCWGG 2 cut(s) 1079, 1241
BclI TGATCA 2 cut(s) 177, 315
BcnI CCSGG 2 cut(s) 73, 1164
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 2 cut(s) 1032, 1306
BfmI CTRYAG 1 cut(s) 384
BfuAI ACCTGC 1 cut(s) 271
BglI GCCNNNNNGGC 1 cut(s) 55
BisI GCNGC 4 cut(s) 297, 792, 1013, 1083
BlsI GCNGC 4 cut(s) 298, 793, 1014, 1084
Bme1390I CCNGG 4 cut(s) 73, 1079, 1164, 1241
Bme18I GGWCC 1 cut(s) 1215
BmgT120I GGNCC 1 cut(s) 1215
BmiI GGNNCC 3 cut(s) 109, 630, 824
BmrFI CCNGG 4 cut(s) 73, 1079, 1164, 1241
BmrI ACTGGG 1 cut(s) 674
BmsI GCATC 1 cut(s) 829
BmuI ACTGGG 1 cut(s) 674
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 2 cut(s) 73, 1164
BsaAI YACGTR 1 cut(s) 25
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 3 cut(s) 72, 579, 1218
BsaWI WCCGGW 1 cut(s) 14
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 490, 625, 638
Bse118I RCCGGY 4 cut(s) 7, 49, 127, 157
Bse1I ACTGG 2 cut(s) 680, 783
Bse3DI GCAATG 2 cut(s) 180, 897
BseBI CCWGG 2 cut(s) 1079, 1241
BseDI CCNNGG 3 cut(s) 72, 579, 1218
BseGI GGATG 4 cut(s) 367, 844, 994, 1189
BseLI CCNNNNNNNGG 4 cut(s) 14, 490, 625, 638
BseMI GCAATG 2 cut(s) 180, 897
BseMII CTCAG 1 cut(s) 965
BseNI ACTGG 2 cut(s) 680, 783
BseSI GKGCMC 1 cut(s) 720
BseXI GCAGC 2 cut(s) 803, 1069
BsgI GTGCAG 1 cut(s) 810
BshFI GGCC 3 cut(s) 194, 1022, 1059
BshNI GGYRCC 2 cut(s) 628, 822
BsiHKAI GWGCWC 3 cut(s) 22, 147, 720
BslFI GGGAC 2 cut(s) 662, 1223
BslI CCNNNNNNNGG 4 cut(s) 14, 490, 625, 638
BsmAI GTCTC 1 cut(s) 205
BsmBI CGTCTC 1 cut(s) 205
BsmFI GGGAC 2 cut(s) 662, 1223
BsmI GAATGC 2 cut(s) 229, 397
BsnI GGCC 3 cut(s) 194, 1022, 1059
Bsp1286I GDGCHC 3 cut(s) 22, 147, 720
Bsp1407I TGTACA 1 cut(s) 1186
Bsp143I GATC 5 cut(s) 177, 287, 315, 771, 1127
Bsp19I CCATGG 2 cut(s) 579, 1218
BspACI CCGC 5 cut(s) 58, 77, 297, 764, 1013
BspANI GGCC 3 cut(s) 194, 1022, 1059
BspCNI CTCAG 1 cut(s) 966
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 3 cut(s) 109, 630, 824
BspMAI CTGCAG 1 cut(s) 388
BspMI ACCTGC 1 cut(s) 271
BspPI GGATC 3 cut(s) 295, 779, 1135
BspT107I GGYRCC 2 cut(s) 628, 822
BsrDI GCAATG 2 cut(s) 180, 897
BsrFI RCCGGY 4 cut(s) 7, 49, 127, 157
BsrGI TGTACA 1 cut(s) 1186
BsrI ACTGG 2 cut(s) 680, 783
BssAI RCCGGY 4 cut(s) 7, 49, 127, 157
BssECI CCNNGG 3 cut(s) 72, 579, 1218
BssMI GATC 5 cut(s) 177, 287, 315, 771, 1127
BssNI GRCGYC 1 cut(s) 198
BssSI CACGAG 1 cut(s) 94
BssT1I CCWWGG 2 cut(s) 579, 1218
Bst2BI CACGAG 1 cut(s) 94
Bst2UI CCWGG 2 cut(s) 1079, 1241
Bst4CI ACNGT 2 cut(s) 816, 1228
BstACI GRCGYC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 590
BstAUI TGTACA 1 cut(s) 1186
BstBAI YACGTR 1 cut(s) 25
BstC8I GCNNGC 3 cut(s) 9, 192, 1061
BstDEI CTNAG 3 cut(s) 518, 974, 1178
BstDSI CCRYGG 2 cut(s) 579, 1218
BstF5I GGATG 4 cut(s) 367, 844, 994, 1189
BstKTI GATC 5 cut(s) 180, 290, 318, 774, 1130
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 5 cut(s) 177, 287, 315, 771, 1127
BstMWI GCNNNNNNNGC 8 cut(s) 17, 55, 191, 590, 742, 848, 896, 1088
BstNI CCWGG 2 cut(s) 1079, 1241
BstSCI CCNGG 4 cut(s) 71, 1077, 1162, 1239
BstSFI CTRYAG 1 cut(s) 384
BstSLI GKGCMC 1 cut(s) 720
BstV1I GCAGC 2 cut(s) 803, 1069
BstX2I RGATCY 1 cut(s) 771
BstXI CCANNNNNNTGG 1 cut(s) 1104
BstYI RGATCY 1 cut(s) 771
BsuRI GGCC 3 cut(s) 194, 1022, 1059
BtgI CCRYGG 2 cut(s) 579, 1218
BtsCI GGATG 4 cut(s) 367, 844, 994, 1189
BtsI GCAGTG 3 cut(s) 558, 669, 906
BtsIMutI CAGTG 5 cut(s) 72, 558, 669, 776, 906
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 3 cut(s) 9, 192, 1061
CciI TCATGA 1 cut(s) 312
Cfr10I RCCGGY 4 cut(s) 7, 49, 127, 157
Cfr13I GGNCC 1 cut(s) 1215
Csp6I GTAC 5 cut(s) 343, 629, 823, 1108, 1187
CviAII CATG 5 cut(s) 313, 580, 847, 1190, 1219
CviQI GTAC 5 cut(s) 343, 629, 823, 1108, 1187
DdeI CTNAG 3 cut(s) 518, 974, 1178
DpnI GATC 5 cut(s) 179, 289, 317, 773, 1129
DpnII GATC 5 cut(s) 177, 287, 315, 771, 1127
EaeI YGGCCR 2 cut(s) 192, 1020
Ecl136II GAGCTC 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 579, 1218
Eco24I GRGCYC 1 cut(s) 22
Eco32I GATATC 1 cut(s) 759
Eco47I GGWCC 1 cut(s) 1215
Eco53kI GAGCTC 1 cut(s) 20
Eco72I CACGTG 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 20
EcoRII CCWGG 2 cut(s) 1077, 1239
EcoRV GATATC 1 cut(s) 759
EcoT14I CCWWGG 2 cut(s) 579, 1218
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 2 cut(s) 579, 1218
Esp3I CGTCTC 1 cut(s) 205
FaeI CATG 5 cut(s) 316, 583, 850, 1193, 1222
FaqI GGGAC 2 cut(s) 662, 1223
FatI CATG 5 cut(s) 312, 579, 846, 1189, 1218
FauI CCCGC 1 cut(s) 51
FbaI TGATCA 2 cut(s) 177, 315
Fnu4HI GCNGC 4 cut(s) 297, 792, 1013, 1083
FokI GGATG 4 cut(s) 374, 851, 1001, 1196
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 4 cut(s) 297, 792, 1013, 1083
FspBI CTAG 2 cut(s) 1032, 1306
GluI GCNGC 4 cut(s) 297, 792, 1013, 1083
HaeIII GGCC 3 cut(s) 194, 1022, 1059
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 5 cut(s) 316, 583, 850, 1193, 1222
HindIII AAGCTT 1 cut(s) 634
HinfI GANTC 4 cut(s) 239, 269, 512, 884
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 4 cut(s) 93, 225, 718, 865
Hpy188I TCNGA 5 cut(s) 40, 751, 883, 942, 975
Hpy188III TCNNGA 5 cut(s) 214, 313, 372, 769, 961
Hpy8I GTNNAC 4 cut(s) 93, 225, 718, 865
Hpy99I CGWCG 3 cut(s) 200, 250, 751
HpyAV CCTTC 7 cut(s) 386, 596, 664, 706, 1102, 1162, 1200
HpyCH4III ACNGT 2 cut(s) 816, 1228
HpyCH4IV ACGT 5 cut(s) 24, 87, 198, 248, 1110
HpyF10VI GCNNNNNNNGC 8 cut(s) 17, 55, 191, 590, 742, 848, 896, 1088
HpyF3I CTNAG 3 cut(s) 518, 974, 1178
HpySE526I ACGT 5 cut(s) 24, 87, 198, 248, 1110
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 5 cut(s) 316, 583, 850, 1193, 1222
KpnI GGTACC 2 cut(s) 632, 826
KroI GCCGGC 1 cut(s) 7
KroNI GCCGGC 1 cut(s) 9
Ksp22I TGATCA 2 cut(s) 177, 315
Kzo9I GATC 5 cut(s) 177, 287, 315, 771, 1127
LmnI GCTCC 2 cut(s) 17, 107
Lsp1109I GCAGC 2 cut(s) 803, 1069
LweI GCATC 1 cut(s) 829
MaeI CTAG 2 cut(s) 1032, 1306
MaeII ACGT 5 cut(s) 24, 87, 198, 248, 1110
MaeIII GTNAC 2 cut(s) 688, 1249
MalI GATC 5 cut(s) 179, 289, 317, 773, 1129
MboI GATC 5 cut(s) 177, 287, 315, 771, 1127
MboII GAAGA 1 cut(s) 536
MfeI CAATTG 3 cut(s) 723, 1086, 1170
MflI RGATCY 1 cut(s) 771
MhlI GDGCHC 3 cut(s) 22, 147, 720
MlsI TGGCCA 1 cut(s) 1022
MluCI AATT 8 cut(s) 102, 114, 336, 354, 723, 982, 1086, 1170
MluNI TGGCCA 1 cut(s) 1022
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 2 cut(s) 18, 729
MnlI CCTC 8 cut(s) 48, 213, 258, 467, 661, 944, 966, 969
Mox20I TGGCCA 1 cut(s) 1022
MroNI GCCGGC 1 cut(s) 7
MscI TGGCCA 1 cut(s) 1022
MseI TTAA 3 cut(s) 335, 500, 923
MslI CAYNNNNRTG 4 cut(s) 304, 402, 711, 860
Msp20I TGGCCA 1 cut(s) 1022
MspA1I CMGCKG 1 cut(s) 764
MspR9I CCNGG 4 cut(s) 73, 1079, 1164, 1241
MunI CAATTG 3 cut(s) 723, 1086, 1170
Mva1269I GAATGC 2 cut(s) 229, 397
MvaI CCWGG 2 cut(s) 1079, 1241
MwoI GCNNNNNNNGC 8 cut(s) 17, 55, 191, 590, 742, 848, 896, 1088
NaeI GCCGGC 1 cut(s) 9
NciI CCSGG 2 cut(s) 73, 1164
NcoI CCATGG 2 cut(s) 579, 1218
NdeII GATC 5 cut(s) 177, 287, 315, 771, 1127
NgoMIV GCCGGC 1 cut(s) 7
NlaIII CATG 5 cut(s) 316, 583, 850, 1193, 1222
NlaIV GGNNCC 3 cut(s) 109, 630, 824
NmuCI GTSAC 1 cut(s) 688
PagI TCATGA 1 cut(s) 312
PaqCI CACCTGC 1 cut(s) 271
PctI GAATGC 2 cut(s) 229, 397
PdiI GCCGGC 1 cut(s) 9
PfeI GAWTC 3 cut(s) 239, 512, 884
PkrI GCNGC 4 cut(s) 298, 793, 1014, 1084
PleI GAGTC 1 cut(s) 277
PmaCI CACGTG 1 cut(s) 25
PmlI CACGTG 1 cut(s) 25
PpsI GAGTC 1 cut(s) 277
Ppu21I YACGTR 1 cut(s) 25
Psp124BI GAGCTC 1 cut(s) 22
Psp6I CCWGG 2 cut(s) 1077, 1239
PspCI CACGTG 1 cut(s) 25
PspGI CCWGG 2 cut(s) 1077, 1239
PspN4I GGNNCC 3 cut(s) 109, 630, 824
PspPI GGNCC 1 cut(s) 1215
PstI CTGCAG 1 cut(s) 388
PsuI RGATCY 1 cut(s) 771
RsaI GTAC 5 cut(s) 344, 630, 824, 1109, 1188
RsaNI GTAC 5 cut(s) 343, 629, 823, 1108, 1187
RseI CAYNNNNRTG 4 cut(s) 304, 402, 711, 860
SacI GAGCTC 1 cut(s) 22
SaqAI TTAA 3 cut(s) 335, 500, 923
SatI GCNGC 4 cut(s) 297, 792, 1013, 1083
Sau3AI GATC 5 cut(s) 177, 287, 315, 771, 1127
Sau96I GGNCC 1 cut(s) 1215
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 4 cut(s) 73, 1079, 1164, 1241
SduI GDGCHC 3 cut(s) 22, 147, 720
SfaNI GCATC 1 cut(s) 829
SfcI CTRYAG 1 cut(s) 384
SinI GGWCC 1 cut(s) 1215
SmiMI CAYNNNNRTG 4 cut(s) 304, 402, 711, 860
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 8 cut(s) 102, 114, 336, 354, 723, 982, 1086, 1170
SsiI CCGC 5 cut(s) 58, 77, 297, 764, 1013
SspMI CTAG 2 cut(s) 1032, 1306
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 4 cut(s) 71, 1077, 1162, 1239
StyI CCWWGG 2 cut(s) 579, 1218
TaaI ACNGT 2 cut(s) 816, 1228
TaiI ACGT 5 cut(s) 27, 90, 201, 251, 1113
TaqI TCGA 1 cut(s) 919
TasI AATT 8 cut(s) 102, 114, 336, 354, 723, 982, 1086, 1170
TatI WGTACW 1 cut(s) 1186
TauI GCSGC 2 cut(s) 299, 1015
TfiI GAWTC 3 cut(s) 239, 512, 884
Tru1I TTAA 3 cut(s) 335, 500, 923
Tru9I TTAA 3 cut(s) 335, 500, 923
TscAI CASTG 5 cut(s) 72, 558, 676, 783, 906
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 2 cut(s) 791, 1082
Tsp45I GTSAC 1 cut(s) 688
TspDTI ATGAA 3 cut(s) 466, 1005, 1144
TspRI CASTG 5 cut(s) 72, 558, 676, 783, 906
VneI GTGCAC 1 cut(s) 716
VpaK11BI GGWCC 1 cut(s) 1215
XapI RAATTY 1 cut(s) 982
XcmI CCANNNNNNNNNTGG 1 cut(s) 353
XspI CTAG 2 cut(s) 1032, 1306
ZraI GACGTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.