Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004145

Physical Location & Seq

Genomic Coordinates Forward (+)

59394274 .. 59397056

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG368800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTCGCCGGCGGCCGGAGTTCACGCTCCACTGCTGCCGGAGAACAAGAAAGTAAGGCATGGAGGCTCGGTTTCCGGGGCGGTGTTCAATGTTTCGACTAGCATTATTGGTGCTGGGATTATGTCCATTCCTGCCACTCTTAAGGTGTTGGGGGTCATACCAGCCTTTGTGCTCATTGTGATCATTGCTTTCTTGGCCGACGTTTCGGTAGAGTTTCTGATGAGGTTTACGCATTCCGGCGAGTCGAGGACGTACGCCGGTGTCATGAGGGAGTCGTTTGGGGAGGTCGGATCGGTTGCAGCACAAGTATGTGTTATGATCACTAATCTAGGGTGCTTGATCATGTACCAGATTATAATAGGGGATGTCCTTTCTGGAAATAAAACGGGGCATTTGGGTGTTCTGCAAGAATGGTTTGGAGTTCAGTGGTGGAACTCACGTGACATCGCTCTCTTGTTCACTCTGGTTTTGATAATGCTACCGTTGGTGTTGTTAAGGCGTGTAGAATCTCTGAGGTTCAGTTCAGCTATATCAGTTCTTCTTGCTGTGGTTTTTGTTGGAATAAGTTCTGCAATGGCAATCCTCGCAATCTTTGAAGGGAAAACCAAAACCCCAAGATTGGTTCCAAGTTTAGACCAACAAACCACCTTCTTTGATCTGTTCACTGCTGTTCCAGTCATTGTGACTGCCTTCACTTTTCATTTCAATGTTCACCCTATCGGTTTCGAGCTTGGGAAGCCTTCAGATATGATCTTGGCTGTCCAAATCTCATTAGTGCTTTGTGCAGCCATCTACTTCACCATAGGACTATTTGGGTACCTATTGTTTGGGGATTCAATCATGCCTGACATACTTGTAAACTTTGATAGAAGCTCTGATTCAGCAATGGGGGCACTACTCAATGATGTGGTCAGATTGAGCTATGCACTCCACTTGATGTTGGTGTTTCCACTCTTGAACTTCTCTTTAAGAACAAACATGGATGAGTTTCTTTTCCCTAAGAAGCCACTACTGGCAACAGATACCAAAAGATTTATGTTCCTCACTTTTGGTTTACTAGTCTTTTCTTACCTAGCAGCAATAGCATTCCCAAACATTTGGTATCTCTTTCAGTTTCTGGGTTCAACCTCTGCGGTCTGCCTTGCATTCATTTTCCCTGGTGCTATTGTTCTGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

392

Amino Acids

42.81

Weight (kDa)

7.72

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	20 - 389	1.1e-49	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	23 - 255	5.5e-09	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40420 AT3G56200
fragaria_vesca	FvH4_7g25490 FvH4_7g25490 FvH4_7g25500
malus_domestica	MD01G1161200.v1.1 MD01G1161300.v1.1 MD06G1044000.v1.1 MD07G1229200.v1.1
prunus_persica	Prupe.2G259300_v2.0.a1 Prupe.2G259400_v2.0.a1
pyrus_communis	pycom01g17700 pycom01g17710 pycom07g20740
rosa_chinensis	RchiOBHm_Chr1g0371451 RchiOBHm_Chr1g0371471
rosa_laevigata	RLG00000026959 RLG00000026960
rosa_multiflora	Rmu_sc0000809.1_g000020 Rmu_sc0000809.1_g000021 Rmu_sc0029071.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285660 Rroxscaffold_4G00285670
rosa_rugosa	Rorug01G0364100 Rorug01G0364100
rosa_samantha	Rh1AG374300 Rh1AG374400 Rh1BG337800 Rh1CG351000 Rh1CG351100 Rh1DG368800
rosa_wichuraiana	Rw1G032920 Rw1G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
Acc65I	GGTACC	1 cut(s)	816
AccB1I	GGYRCC	1 cut(s)	816
AciI	CCGC	3 cut(s)	11, 80, 1133
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	2 cut(s)	12, 195
AcuI	CTGAAG	1 cut(s)	726
AcvI	CACGTG	1 cut(s)	440
AfaI	GTAC	3 cut(s)	254, 347, 818
AfiI	CCNNNNNNNGG	2 cut(s)	14, 619
AflII	CTTAAG	1 cut(s)	140
AgsI	TTSAA	6 cut(s)	88, 596, 706, 837, 958, 1125
AhlI	ACTAGT	1 cut(s)	1057
AjnI	CCWGG	1 cut(s)	1156
AluBI	AGCT	4 cut(s)	527, 730, 873, 921
AluI	AGCT	4 cut(s)	527, 730, 873, 921
Alw21I	GWGCWC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	298
AlwNI	CAGNNNCTG	1 cut(s)	1117
AoxI	GGCC	2 cut(s)	12, 195
ApeKI	GCWGC	4 cut(s)	34, 299, 785, 1076
Asp700I	GAANNNNTTC	1 cut(s)	565
Asp718I	GGTACC	1 cut(s)	816
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	704, 790
BaeGI	GKGCMC	1 cut(s)	895
BanI	GGYRCC	1 cut(s)	816
BbrPI	CACGTG	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	4 cut(s)	21, 311, 797, 1088
BccI	CCATC	1 cut(s)	797
BciT130I	CCWGG	1 cut(s)	1158
BclI	TGATCA	3 cut(s)	180, 318, 339
BcnI	CCSGG	1 cut(s)	76
BcuI	ACTAGT	1 cut(s)	1057
BfaI	CTAG	4 cut(s)	99, 329, 1058, 1073
BfrI	CTTAAG	1 cut(s)	140
BisI	GCNGC	5 cut(s)	12, 35, 300, 786, 1077
BlsI	GCNGC	5 cut(s)	13, 36, 301, 787, 1078
Bme1390I	CCNGG	2 cut(s)	76, 1158
BmiI	GGNNCC	2 cut(s)	624, 818
BmrFI	CCNGG	2 cut(s)	76, 1158
BpuMI	CCSGG	1 cut(s)	76
BsaAI	YACGTR	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	75, 1156
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 619
Bse118I	RCCGGY	2 cut(s)	7, 257
Bse1I	ACTGG	2 cut(s)	674, 1017
Bse3DI	GCAATG	3 cut(s)	183, 579, 891
BseBI	CCWGG	1 cut(s)	1158
BseDI	CCNNGG	2 cut(s)	75, 1156
BseGI	GGATG	2 cut(s)	370, 988
BseLI	CCNNNNNNNGG	2 cut(s)	14, 619
BseMI	GCAATG	3 cut(s)	183, 579, 891
BseMII	CTCAG	2 cut(s)	503, 1163
BseNI	ACTGG	2 cut(s)	674, 1017
BseSI	GKGCMC	1 cut(s)	895
BseX3I	CGGCCG	1 cut(s)	12
BseXI	GCAGC	4 cut(s)	21, 311, 797, 1088
BseYI	CCCAGC	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	804
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	14, 197
BshNI	GGYRCC	1 cut(s)	816
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	6 cut(s)	8, 15, 38, 75, 237, 258
BsiWI	CGTACG	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	14, 619
BsmI	GAATGC	3 cut(s)	232, 1085, 1145
BsnI	GGCC	2 cut(s)	14, 197
Bsp1286I	GDGCHC	2 cut(s)	174, 895
Bsp143I	GATC	6 cut(s)	180, 290, 318, 339, 655, 750
BspACI	CCGC	3 cut(s)	11, 80, 1133
BspANI	GGCC	2 cut(s)	14, 197
BspCNI	CTCAG	2 cut(s)	504, 1164
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	624, 818
BspPI	GGATC	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	816
BspTI	CTTAAG	1 cut(s)	140
BsrDI	GCAATG	3 cut(s)	183, 579, 891
BsrFI	RCCGGY	2 cut(s)	7, 257
BsrI	ACTGG	2 cut(s)	674, 1017
BssAI	RCCGGY	2 cut(s)	7, 257
BssECI	CCNNGG	2 cut(s)	75, 1156
BssMI	GATC	6 cut(s)	180, 290, 318, 339, 655, 750
Bst2UI	CCWGG	1 cut(s)	1158
Bst4CI	ACNGT	1 cut(s)	483
BstAFI	CTTAAG	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	3 cut(s)	512, 999, 1172
BstF5I	GGATG	2 cut(s)	370, 988
BstKTI	GATC	6 cut(s)	183, 293, 321, 342, 658, 753
BstMBI	GATC	6 cut(s)	180, 290, 318, 339, 655, 750
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	5 cut(s)	194, 584, 736, 890, 1082
BstNI	CCWGG	1 cut(s)	1158
BstSCI	CCNGG	2 cut(s)	74, 1156
BstSLI	GKGCMC	1 cut(s)	895
BstV1I	GCAGC	4 cut(s)	21, 311, 797, 1088
BstXI	CCANNNNNNTGG	1 cut(s)	1098
BstZI	CGGCCG	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	14, 197
BtgZI	GCGATG	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	370, 988
BtsI	GCAGTG	2 cut(s)	29, 663
BtsIMutI	CAGTG	3 cut(s)	29, 431, 663
Cac8I	GCNNGC	1 cut(s)	9
CaiI	CAGNNNCTG	1 cut(s)	1117
CciI	TCATGA	1 cut(s)	264
Cfr10I	RCCGGY	2 cut(s)	7, 257
Csp6I	GTAC	3 cut(s)	253, 346, 817
CspCI	CAANNNNNGTGG	2 cut(s)	634, 669
CviAII	CATG	5 cut(s)	59, 265, 343, 841, 979
CviQI	GTAC	3 cut(s)	253, 346, 817
DdeI	CTNAG	3 cut(s)	512, 999, 1172
DpnI	GATC	6 cut(s)	182, 292, 320, 341, 657, 752
DpnII	GATC	6 cut(s)	180, 290, 318, 339, 655, 750
EaeI	YGGCCR	2 cut(s)	12, 195
EagI	CGGCCG	1 cut(s)	12
EclXI	CGGCCG	1 cut(s)	12
Eco52I	CGGCCG	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	726
Eco72I	CACGTG	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	1156
FaeI	CATG	5 cut(s)	62, 268, 346, 844, 982
FatI	CATG	5 cut(s)	58, 264, 342, 840, 978
FbaI	TGATCA	3 cut(s)	180, 318, 339
Fnu4HI	GCNGC	5 cut(s)	12, 35, 300, 786, 1077
FokI	GGATG	2 cut(s)	377, 995
Fsp4HI	GCNGC	5 cut(s)	12, 35, 300, 786, 1077
FspBI	CTAG	4 cut(s)	99, 329, 1058, 1073
GluI	GCNGC	5 cut(s)	12, 35, 300, 786, 1077
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	14, 197
HapII	CCGG	6 cut(s)	8, 15, 38, 75, 237, 258
Hin1II	CATG	5 cut(s)	62, 268, 346, 844, 982
HinfI	GANTC	5 cut(s)	242, 272, 506, 833, 878
HpaII	CCGG	6 cut(s)	8, 15, 38, 75, 237, 258
HphI	GGTGA	2 cut(s)	704, 790
Hpy166II	GTNNAC	7 cut(s)	22, 228, 459, 663, 712, 859, 1055
Hpy188I	TCNGA	7 cut(s)	219, 290, 513, 745, 877, 914, 1173
Hpy188III	TCNNGA	3 cut(s)	265, 375, 955
Hpy8I	GTNNAC	7 cut(s)	22, 228, 459, 663, 712, 859, 1055
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	4 cut(s)	590, 658, 700, 750
HpyCH4III	ACNGT	1 cut(s)	483
HpyCH4IV	ACGT	3 cut(s)	201, 251, 439
HpyCH4V	TGCA	6 cut(s)	299, 406, 572, 785, 926, 1145
HpyF10VI	GCNNNNNNNGC	5 cut(s)	194, 584, 736, 890, 1082
HpyF3I	CTNAG	3 cut(s)	512, 999, 1172
HpySE526I	ACGT	3 cut(s)	201, 251, 439
Hsp92II	CATG	5 cut(s)	62, 268, 346, 844, 982
KpnI	GGTACC	1 cut(s)	820
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Ksp22I	TGATCA	3 cut(s)	180, 318, 339
Kzo9I	GATC	6 cut(s)	180, 290, 318, 339, 655, 750
LmnI	GCTCC	1 cut(s)	31
Lsp1109I	GCAGC	4 cut(s)	21, 311, 797, 1088
MaeI	CTAG	4 cut(s)	99, 329, 1058, 1073
MaeII	ACGT	3 cut(s)	201, 251, 439
MaeIII	GTNAC	2 cut(s)	440, 682
MalI	GATC	6 cut(s)	182, 292, 320, 341, 657, 752
MboI	GATC	6 cut(s)	180, 290, 318, 339, 655, 750
MboII	GAAGA	1 cut(s)	530
MhlI	GDGCHC	2 cut(s)	174, 895
MlyI	GAGTC	2 cut(s)	251, 281
MmeI	TCCRAC	2 cut(s)	268, 538
MreI	CGCCGGCG	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	7
MroXI	GAANNNNTTC	1 cut(s)	565
MseI	TTAA	3 cut(s)	141, 494, 968
MslI	CAYNNNNRTG	3 cut(s)	307, 396, 705
MspCI	CTTAAG	1 cut(s)	140
MspI	CCGG	6 cut(s)	8, 15, 38, 75, 237, 258
MspR9I	CCNGG	2 cut(s)	76, 1158
Mva1269I	GAATGC	3 cut(s)	232, 1085, 1145
MvaI	CCWGG	1 cut(s)	1158
MwoI	GCNNNNNNNGC	5 cut(s)	194, 584, 736, 890, 1082
NaeI	GCCGGC	1 cut(s)	9
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	6 cut(s)	180, 290, 318, 339, 655, 750
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	5 cut(s)	62, 268, 346, 844, 982
NlaIV	GGNNCC	2 cut(s)	624, 818
NmuCI	GTSAC	2 cut(s)	440, 682
PagI	TCATGA	1 cut(s)	264
PctI	GAATGC	3 cut(s)	232, 1085, 1145
PdiI	GCCGGC	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	565
PfeI	GAWTC	3 cut(s)	506, 833, 878
Pfl23II	CGTACG	1 cut(s)	252
PkrI	GCNGC	5 cut(s)	13, 36, 301, 787, 1078
PleI	GAGTC	2 cut(s)	250, 280
PmaCI	CACGTG	1 cut(s)	440
PmlI	CACGTG	1 cut(s)	440
PpsI	GAGTC	2 cut(s)	250, 280
Ppu21I	YACGTR	1 cut(s)	440
PsiI	TTATAA	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	1156
PspCI	CACGTG	1 cut(s)	440
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	1156
PspLI	CGTACG	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	624, 818
PstNI	CAGNNNCTG	1 cut(s)	1117
RsaI	GTAC	3 cut(s)	254, 347, 818
RsaNI	GTAC	3 cut(s)	253, 346, 817
RseI	CAYNNNNRTG	3 cut(s)	307, 396, 705
SaqAI	TTAA	3 cut(s)	141, 494, 968
SatI	GCNGC	5 cut(s)	12, 35, 300, 786, 1077
Sau3AI	GATC	6 cut(s)	180, 290, 318, 339, 655, 750
SchI	GAGTC	2 cut(s)	251, 281
ScrFI	CCNGG	2 cut(s)	76, 1158
SduI	GDGCHC	2 cut(s)	174, 895
SgrAI	CRCCGGYG	2 cut(s)	7, 257
SmiMI	CAYNNNNRTG	3 cut(s)	307, 396, 705
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SpeI	ACTAGT	1 cut(s)	1057
SsiI	CCGC	3 cut(s)	11, 80, 1133
SspMI	CTAG	4 cut(s)	99, 329, 1058, 1073
StyD4I	CCNGG	2 cut(s)	74, 1156
TaaI	ACNGT	1 cut(s)	483
TaiI	ACGT	3 cut(s)	204, 254, 442
TaqI	TCGA	3 cut(s)	95, 245, 726
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	3 cut(s)	506, 833, 878
Tru1I	TTAA	3 cut(s)	141, 494, 968
Tru9I	TTAA	3 cut(s)	141, 494, 968
TscAI	CASTG	3 cut(s)	36, 431, 670
TseFI	GTSAC	2 cut(s)	440, 682
TseI	GCWGC	4 cut(s)	34, 299, 785, 1076
Tsp45I	GTSAC	2 cut(s)	440, 682
TspDTI	ATGAA	2 cut(s)	689, 1138
TspRI	CASTG	3 cut(s)	36, 431, 670
Vha464I	CTTAAG	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	565
XspI	CTAG	4 cut(s)	99, 329, 1058, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.