Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004145

Physical Location & Seq

Genomic Coordinates Reverse (-)

6916318 .. 6918801

Gene Structure 2484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00285670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGACGAACCAGCAAAACAACGATGAAGCCGGAGTGGTCACTCATCCTCTTCTCCATGACTTCAAAACCCTAGAAGGTCAAACTTCTTCATCATCCTCCATACAAGGCGCTTCATTTTCCGGCGCCGTTTTCAACATCTCAACCACCATGATCGGAGCCGGAATCATGTCTATCCCGGCCACCATGAAAGTGCTGGGAATAATTCCGGGGTTCATAGCTATCTTAGTAGTGGCTGTCTTGACAGAGGTCACGGTGGAGTTCATGCTAAGGTACACGAACTCCGGCAAGTCGGAAACTTACGCCGGCATGGTGGGGGAGTCGTTTGGACCGTTGGGTTCGATTTCTGTGCAAGTCTGTATCATCATAACCAACCTGGGTTGCCTCATCATTTATTTCATCATCATCGGGGATGTGCTATGTGGGAGTACTCAATCTGGAGGAATTTTGCATTTGGGAATGTTACAAGAATGGTTTGGCATCCATTGGTGGAATTCTCGAGCTTATGCGCTTCTTTTCATTGCTATATTTGTGATGCTTCCATTAGTCTTGTTACGCCGAGTAGATTCACTGAGGCACACTTCAGCAATATCCATTTTGTTAGCAGTGGTTTTTGTTGCCATATGCTCTGCAACGGCGATTTATGCTGTGTGCAAAGGGAAAGCTCACAAACTGAGACTATTTCCGGACTTTGCAATGGTCTCAATATTTGATATTTTCACCAGTATCCCAGTCGTTGTGACAAGTTTTGGATTCCATGTCAATGTTCATCCAATTAGAGCAGAGCTTGGTGAGCCTTCTGATATGAAGTTAGCTGGTCGGATTTCTCTGCTGATCTGCGTCACCATTTACTTCTCGATTGGCTTCTTTGGCTACCTATTGTTCGGGGACTCAATAATGGCTGACATGCTAGTAAACTTTGATCAAAACTCTGGCTCCACATTCGGGCAGATGCTCAATGTTGTTGTTCGATCAAGCTATGCAATGCACCTCTTGCTGGTGTTCCCCGTTATGCACTTTTCATTAAGGGCCAACATAGATGAACTGCTCTTCCCAAACAAGCCTGTTTTGGCCGAAAGCAACTCAAGATTTCTAATCCTCACTTGTGTCTTGCTCTCATTTTCTTACTTTGTGGCAATAGCTATCCCAAACATATGGTACTTCTTTCAGTTCATGGGATCAACCACTGTGGTTTGCCTCTCATTTATATTTCCTGGTGCACTCATTCTCAGGGATGGACATGGGATATCAACAACAAAGGACAAGATAATAGCAATATTGGTGATAGTTTTGGCTGTGGTGACAAGCTCAGTTGCAATCTCCAGCAATTTGTACACTTCAACTCAAAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

450

Amino Acids

48.92

Weight (kDa)

6.58

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	37 - 421	2.1e-50	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	38 - 284	2.4e-10	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40420 AT3G56200
fragaria_vesca	FvH4_7g25490 FvH4_7g25490 FvH4_7g25500
malus_domestica	MD01G1161200.v1.1 MD01G1161300.v1.1 MD06G1044000.v1.1 MD07G1229200.v1.1
prunus_persica	Prupe.2G259300_v2.0.a1 Prupe.2G259400_v2.0.a1
pyrus_communis	pycom01g17700 pycom01g17710 pycom07g20740
rosa_chinensis	RchiOBHm_Chr1g0371451 RchiOBHm_Chr1g0371471
rosa_laevigata	RLG00000026959 RLG00000026960
rosa_multiflora	Rmu_sc0000809.1_g000020 Rmu_sc0000809.1_g000021 Rmu_sc0029071.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285660 Rroxscaffold_4G00285670
rosa_rugosa	Rorug01G0364100 Rorug01G0364100
rosa_samantha	Rh1AG374300 Rh1AG374400 Rh1BG337800 Rh1CG351000 Rh1CG351100 Rh1DG368800
rosa_wichuraiana	Rw1G032920 Rw1G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccIII	TCCGGA	1 cut(s)	682
AclWI	GGATC	1 cut(s)	1183
AcoI	YGGCCR	2 cut(s)	177, 1068
AcsI	RAATTY	2 cut(s)	441, 490
AcuI	CTGAAG	1 cut(s)	564
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	4 cut(s)	272, 427, 1157, 1331
AfiI	CCNNNNNNNGG	2 cut(s)	942, 994
AgsI	TTSAA	3 cut(s)	64, 133, 1338
AjnI	CCWGG	2 cut(s)	372, 1210
AloI	GAACNNNNNNTCC	2 cut(s)	1032, 1064
AluBI	AGCT	9 cut(s)	218, 500, 662, 784, 812, 975, 1139, 1305, 1347
AluI	AGCT	9 cut(s)	218, 500, 662, 784, 812, 975, 1139, 1305, 1347
Alw21I	GWGCWC	1 cut(s)	1219
Alw26I	GTCTC	2 cut(s)	667, 703
Alw44I	GTGCAC	1 cut(s)	1215
AlwI	GGATC	1 cut(s)	1183
Ama87I	CYCGRG	1 cut(s)	495
Aor13HI	TCCGGA	1 cut(s)	682
AoxI	GGCC	3 cut(s)	177, 1026, 1068
ApaLI	GTGCAC	1 cut(s)	1215
ApoI	RAATTY	2 cut(s)	441, 490
AspLEI	GCGC	3 cut(s)	110, 125, 508
AspS9I	GGNCC	2 cut(s)	326, 1026
AsuC2I	CCSGG	2 cut(s)	176, 207
AsuHPI	GGTGA	5 cut(s)	709, 800, 832, 1291, 1309
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	1219
BanI	GGYRCC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	1219
BccI	CCATC	1 cut(s)	1226
BceAI	ACGGC	2 cut(s)	110, 648
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BciT130I	CCWGG	2 cut(s)	374, 1212
BciVI	GTATCC	1 cut(s)	734
BclI	TGATCA	1 cut(s)	919
BcnI	CCSGG	2 cut(s)	176, 207
BcoDI	GTCTC	2 cut(s)	667, 703
BfaI	CTAG	2 cut(s)	71, 908
BfoI	RGCGCY	2 cut(s)	111, 126
BfuI	GTATCC	1 cut(s)	734
BmcAI	AGTACT	1 cut(s)	427
Bme1390I	CCNGG	4 cut(s)	176, 207, 374, 1212
Bme18I	GGWCC	1 cut(s)	326
BmeT110I	CYCGRG	1 cut(s)	495
BmgT120I	GGNCC	2 cut(s)	326, 1026
BmiI	GGNNCC	3 cut(s)	124, 157, 934
BmrFI	CCNGG	4 cut(s)	176, 207, 374, 1212
BmrI	ACTGGG	1 cut(s)	722
BmsI	GCATC	3 cut(s)	486, 522, 939
BmuI	ACTGGG	1 cut(s)	722
BoxI	GACNNNNGTC	1 cut(s)	245
BpmI	CTGGAG	2 cut(s)	456, 1303
Bpu10I	CCTNAGC	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	1066
BpuMI	CCSGG	2 cut(s)	176, 207
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	703
BsaJI	CCNNGG	2 cut(s)	206, 373
BsaWI	WCCGGW	1 cut(s)	682
BsaXI	ACNNNNNCTCC	4 cut(s)	263, 293, 917, 947
Bsc4I	CCNNNNNNNGG	2 cut(s)	942, 994
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	2 cut(s)	720, 728
Bse3DI	GCAATG	3 cut(s)	516, 699, 987
BseAI	TCCGGA	1 cut(s)	682
BseBI	CCWGG	2 cut(s)	374, 1212
BseDI	CCNNGG	2 cut(s)	206, 373
BseGI	GGATG	6 cut(s)	43, 92, 415, 477, 766, 1237
BseLI	CCNNNNNNNGG	2 cut(s)	942, 994
BseMI	GCAATG	3 cut(s)	516, 699, 987
BseMII	CTCAG	4 cut(s)	560, 662, 1240, 1320
BseNI	ACTGG	2 cut(s)	720, 728
BseSI	GKGCMC	1 cut(s)	1219
BseYI	CCCAGC	1 cut(s)	193
BshFI	GGCC	3 cut(s)	179, 1028, 1070
BshNI	GGYRCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	1219
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	8 cut(s)	30, 120, 159, 176, 206, 282, 303, 683
BslFI	GGGAC	1 cut(s)	899
BslI	CCNNNNNNNGG	2 cut(s)	942, 994
BsmAI	GTCTC	2 cut(s)	667, 703
BsmFI	GGGAC	1 cut(s)	899
BsnI	GGCC	3 cut(s)	179, 1028, 1070
Bso31I	GGTCTC	1 cut(s)	703
BsoBI	CYCGRG	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	1219
Bsp13I	TCCGGA	1 cut(s)	682
Bsp1407I	TGTACA	1 cut(s)	1329
Bsp143I	GATC	5 cut(s)	150, 831, 919, 968, 1175
BspANI	GGCC	3 cut(s)	179, 1028, 1070
BspCNI	CTCAG	4 cut(s)	561, 663, 1239, 1319
BspEI	TCCGGA	1 cut(s)	682
BspLI	GGNNCC	3 cut(s)	124, 157, 934
BspPI	GGATC	1 cut(s)	1183
BspQI	GCTCTTC	1 cut(s)	1052
BspT107I	GGYRCC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	703
BsrDI	GCAATG	3 cut(s)	516, 699, 987
BsrFI	RCCGGY	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	1329
BsrI	ACTGG	2 cut(s)	720, 728
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	206, 373
BssMI	GATC	5 cut(s)	150, 831, 919, 968, 1175
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	374, 1212
Bst4CI	ACNGT	3 cut(s)	253, 330, 1186
Bst6I	CTCTTC	2 cut(s)	54, 1052
BstACI	GRCGYC	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	991
BstAUI	TGTACA	1 cut(s)	1329
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	6 cut(s)	223, 266, 569, 671, 1226, 1306
BstF5I	GGATG	6 cut(s)	43, 92, 415, 477, 766, 1237
BstH2I	RGCGCY	2 cut(s)	111, 126
BstHHI	GCGC	3 cut(s)	110, 125, 508
BstKTI	GATC	5 cut(s)	153, 834, 922, 971, 1178
BstMAI	GTCTC	2 cut(s)	667, 703
BstMBI	GATC	5 cut(s)	150, 831, 919, 968, 1175
BstMWI	GCNNNNNNNGC	4 cut(s)	641, 790, 867, 991
BstNI	CCWGG	2 cut(s)	374, 1212
BstNSI	RCATGY	1 cut(s)	907
BstPAI	GACNNNNGTC	1 cut(s)	245
BstSCI	CCNGG	4 cut(s)	174, 205, 372, 1210
BstSLI	GKGCMC	1 cut(s)	1219
BstXI	CCANNNNNNTGG	1 cut(s)	1152
BsuI	GTATCC	1 cut(s)	734
BsuRI	GGCC	3 cut(s)	179, 1028, 1070
BtsCI	GGATG	6 cut(s)	43, 92, 415, 477, 766, 1237
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	3 cut(s)	566, 609, 1182
Cac8I	GCNNGC	1 cut(s)	304
CfoI	GCGC	3 cut(s)	110, 125, 508
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	326, 1026
CseI	GACGC	1 cut(s)	826
Csp6I	GTAC	4 cut(s)	271, 426, 1156, 1330
CspCI	CAANNNNNGTGG	2 cut(s)	1167, 1202
CviQI	GTAC	4 cut(s)	271, 426, 1156, 1330
DdeI	CTNAG	6 cut(s)	223, 266, 569, 671, 1226, 1306
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	5 cut(s)	152, 833, 921, 970, 1177
DpnII	GATC	5 cut(s)	150, 831, 919, 968, 1175
EaeI	YGGCCR	2 cut(s)	177, 1068
Eam1104I	CTCTTC	2 cut(s)	54, 1052
EarI	CTCTTC	2 cut(s)	54, 1052
Eco31I	GGTCTC	1 cut(s)	703
Eco32I	GATATC	1 cut(s)	1245
Eco47I	GGWCC	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	564
Eco88I	CYCGRG	1 cut(s)	495
EcoRI	GAATTC	1 cut(s)	490
EcoRII	CCWGG	2 cut(s)	372, 1210
EcoRV	GATATC	1 cut(s)	1245
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
FaqI	GGGAC	1 cut(s)	899
FauNDI	CATATG	2 cut(s)	620, 1151
FbaI	TGATCA	1 cut(s)	919
FokI	GGATG	6 cut(s)	30, 79, 422, 464, 753, 1244
FspBI	CTAG	2 cut(s)	71, 908
GlaI	GCGC	3 cut(s)	109, 124, 507
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	2 cut(s)	456, 1303
HaeII	RGCGCY	2 cut(s)	111, 126
HaeIII	GGCC	3 cut(s)	179, 1028, 1070
HapII	CCGG	8 cut(s)	30, 120, 159, 176, 206, 282, 303, 683
HgaI	GACGC	1 cut(s)	826
HhaI	GCGC	3 cut(s)	110, 125, 508
Hin1I	GRCGYC	1 cut(s)	123
Hin6I	GCGC	3 cut(s)	108, 123, 506
HinP1I	GCGC	3 cut(s)	108, 123, 506
HinfI	GANTC	5 cut(s)	162, 317, 563, 750, 887
HpaII	CCGG	8 cut(s)	30, 120, 159, 176, 206, 282, 303, 683
HphI	GGTGA	5 cut(s)	709, 800, 832, 1291, 1309
Hpy166II	GTNNAC	4 cut(s)	273, 913, 1217, 1332
Hpy188I	TCNGA	4 cut(s)	155, 292, 799, 819
Hpy188III	TCNNGA	6 cut(s)	238, 435, 495, 683, 853, 1083
Hpy8I	GTNNAC	4 cut(s)	273, 913, 1217, 1332
HpyAV	CCTTC	2 cut(s)	68, 804
HpyCH4III	ACNGT	3 cut(s)	253, 330, 1186
HpyF10VI	GCNNNNNNNGC	4 cut(s)	641, 790, 867, 991
HpyF3I	CTNAG	6 cut(s)	223, 266, 569, 671, 1226, 1306
Hsp92I	GRCGYC	1 cut(s)	123
HspAI	GCGC	3 cut(s)	108, 123, 506
KasI	GGCGCC	1 cut(s)	122
Kpn2I	TCCGGA	1 cut(s)	682
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	919
Kzo9I	GATC	5 cut(s)	150, 831, 919, 968, 1175
LguI	GCTCTTC	1 cut(s)	1052
LmnI	GCTCC	2 cut(s)	155, 938
LweI	GCATC	3 cut(s)	486, 522, 939
MaeI	CTAG	2 cut(s)	71, 908
MaeIII	GTNAC	7 cut(s)	37, 247, 459, 549, 736, 838, 1297
MalI	GATC	5 cut(s)	152, 833, 921, 970, 1177
MboI	GATC	5 cut(s)	150, 831, 919, 968, 1175
MboII	GAAGA	3 cut(s)	41, 78, 1039
MhlI	GDGCHC	1 cut(s)	1219
MluCI	AATT	5 cut(s)	201, 441, 490, 771, 1324
Mly113I	GGCGCC	1 cut(s)	123
MlyI	GAGTC	2 cut(s)	326, 881
MmeI	TCCRAC	2 cut(s)	270, 797
MnlI	CCTC	9 cut(s)	57, 106, 238, 392, 431, 564, 998, 1106, 1205
MroI	TCCGGA	1 cut(s)	682
MroNI	GCCGGC	1 cut(s)	302
MseI	TTAA	2 cut(s)	1022, 1351
MslI	CAYNNNNRTG	2 cut(s)	188, 759
MspI	CCGG	8 cut(s)	30, 120, 159, 176, 206, 282, 303, 683
MspR9I	CCNGG	4 cut(s)	176, 207, 374, 1212
MvaI	CCWGG	2 cut(s)	374, 1212
MwoI	GCNNNNNNNGC	4 cut(s)	641, 790, 867, 991
NaeI	GCCGGC	1 cut(s)	304
NarI	GGCGCC	1 cut(s)	123
NciI	CCSGG	2 cut(s)	176, 207
NdeI	CATATG	2 cut(s)	620, 1151
NdeII	GATC	5 cut(s)	150, 831, 919, 968, 1175
NgoMIV	GCCGGC	1 cut(s)	302
NlaIV	GGNNCC	3 cut(s)	124, 157, 934
NmeAIII	GCCGAG	1 cut(s)	581
NmuCI	GTSAC	5 cut(s)	37, 247, 736, 838, 1297
NspI	RCATGY	1 cut(s)	907
PaeR7I	CTCGAG	1 cut(s)	495
PciSI	GCTCTTC	1 cut(s)	1052
PcsI	WCGNNNNNNNCGW	1 cut(s)	326
PdiI	GCCGGC	1 cut(s)	304
PfeI	GAWTC	3 cut(s)	162, 563, 750
PleI	GAGTC	2 cut(s)	325, 881
PluTI	GGCGCC	1 cut(s)	126
PpsI	GAGTC	2 cut(s)	325, 881
PshAI	GACNNNNGTC	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	372, 1210
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	2 cut(s)	372, 1210
PspN4I	GGNNCC	3 cut(s)	124, 157, 934
PspPI	GGNCC	2 cut(s)	326, 1026
RsaI	GTAC	4 cut(s)	272, 427, 1157, 1331
RsaNI	GTAC	4 cut(s)	271, 426, 1156, 1330
RseI	CAYNNNNRTG	2 cut(s)	188, 759
SapI	GCTCTTC	1 cut(s)	1052
SaqAI	TTAA	2 cut(s)	1022, 1351
Sau3AI	GATC	5 cut(s)	150, 831, 919, 968, 1175
Sau96I	GGNCC	2 cut(s)	326, 1026
ScaI	AGTACT	1 cut(s)	427
SchI	GAGTC	2 cut(s)	326, 881
ScrFI	CCNGG	4 cut(s)	176, 207, 374, 1212
SduI	GDGCHC	1 cut(s)	1219
SfaNI	GCATC	3 cut(s)	486, 522, 939
SfoI	GGCGCC	1 cut(s)	124
Sfr274I	CTCGAG	1 cut(s)	495
SinI	GGWCC	1 cut(s)	326
SlaI	CTCGAG	1 cut(s)	495
SmiMI	CAYNNNNRTG	2 cut(s)	188, 759
SmlI	CTYRAG	2 cut(s)	495, 1081
SmoI	CTYRAG	2 cut(s)	495, 1081
Sse9I	AATT	5 cut(s)	201, 441, 490, 771, 1324
SspDI	GGCGCC	1 cut(s)	122
SspI	AATATT	2 cut(s)	705, 1275
SspMI	CTAG	2 cut(s)	71, 908
StyD4I	CCNGG	4 cut(s)	174, 205, 372, 1210
TaaI	ACNGT	3 cut(s)	253, 330, 1186
TaqI	TCGA	4 cut(s)	338, 496, 854, 967
TasI	AATT	5 cut(s)	201, 441, 490, 771, 1324
TatI	WGTACW	2 cut(s)	425, 1329
TfiI	GAWTC	3 cut(s)	162, 563, 750
Tru1I	TTAA	2 cut(s)	1022, 1351
Tru9I	TTAA	2 cut(s)	1022, 1351
TscAI	CASTG	3 cut(s)	573, 609, 1189
TseFI	GTSAC	5 cut(s)	37, 247, 736, 838, 1297
Tsp45I	GTSAC	5 cut(s)	37, 247, 736, 838, 1297
TspRI	CASTG	3 cut(s)	573, 609, 1189
VneI	GTGCAC	1 cut(s)	1215
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	2 cut(s)	441, 490
XceI	RCATGY	1 cut(s)	907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XhoI	CTCGAG	1 cut(s)	495
XspI	CTAG	2 cut(s)	71, 908
ZrmI	AGTACT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.