Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000809.1

Orthogroup ID

OG0004145

Physical Location & Seq

Genomic Coordinates Reverse (-)

104242 .. 106786

Gene Structure 2545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000809.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

atgacgaaccagcaaaacaacgatgaagccggagtggtcactcatcctcttctccatgacttcaaaaccctagaaggtcaaacttcttcatcatcctccatacaaggcgcttcattttccggcgccgttttcaacatctcaaccaccatgatcggagccggaatcatgtctatcccggccaccatgaaagtgctgggaataattcccgggttcatagctatcttagtagtggctgtcttgacagaggtcacggtggagttcatgctaaggtacacgaactccggcaagtcggaaacctacgccggcatggtgggggagtcgtttggaccgttgggttcgattgctgtgcaagtctgtatcatcataaccaacctgggttgcctcatcatttatttcatcatcatcgaggtcacggtggagttcatgctaaggtacacgaactccggcaagtcggaaacctacgccggcatggtgggggagtcgtttggaccgttgggttcgattgctgtgcaagtctgtatcatcataaccaacctgggttgcctcatcatttatttcatcatcatcggggatgtgctatgtgggagtactcaatctggaggaattttgcatttgggaatgttacaagaatggtttggcatccattggtggaattctcgagcttatgcgcttcttttcattgctatatttgtgatgcttccattagtcttgttacgccgagtagattcacttaggcacacttcggcaatatccattttgttagcagtggtttttgttgccatatgctctgcaacggcgatttatgctgtgtgcaaagggagagctcacaaactgagactatttccggactttgcaatggtctcaatatttgatattttcaccagtatcccagtcgttgtgacaagttttggattccatgtcaatggtgaggaggatacatcaatttttggtctattgtatgttcatccaattagagcagagctcggtgagccttctgatatgaagttagctggtcggatttctctgctgatctgcgtcaccatttacttctcgattggcttctttggctacctattgttcggggactcaataatggctgacatgctagtaaactttgatcaaaactctggctccacattcgggcagatgctcaatgttgttgttcgatcaagctatgcaatgcacctcttgctggtgttccccgttatgcacttttcattaagggccaacatagatgaactgctcttcccaaacaagcctgttttggcggaaagcaactcaagatttctaatcctcacttgtgtcttgctctcattttcttactttgtggcaatagctatcccaaacatatggtacttctttcagtttatgggatcaaccactgtggtttgcctctcatttatattccctggtgctctcattctcagggatggacatgggatatcaacaacaaaggacaagataatagcaatattggtgatagttttggctgtggtgacgagctcagttgcaatctccggcaatttctacacttcaactcaaagctcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

516

Amino Acids

56.12

Weight (kDa)

5.86

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40420 AT3G56200
fragaria_vesca	FvH4_7g25490 FvH4_7g25490 FvH4_7g25500
malus_domestica	MD01G1161200.v1.1 MD01G1161300.v1.1 MD06G1044000.v1.1 MD07G1229200.v1.1
prunus_persica	Prupe.2G259300_v2.0.a1 Prupe.2G259400_v2.0.a1
pyrus_communis	pycom01g17700 pycom01g17710 pycom07g20740
rosa_chinensis	RchiOBHm_Chr1g0371451 RchiOBHm_Chr1g0371471
rosa_laevigata	RLG00000026959 RLG00000026960
rosa_multiflora	Rmu_sc0000809.1_g000020 Rmu_sc0000809.1_g000021 Rmu_sc0029071.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285660 Rroxscaffold_4G00285670
rosa_rugosa	Rorug01G0364100 Rorug01G0364100
rosa_samantha	Rh1AG374300 Rh1AG374400 Rh1BG337800 Rh1CG351000 Rh1CG351100 Rh1DG368800
rosa_wichuraiana	Rw1G032920 Rw1G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccIII	TCCGGA	1 cut(s)	844
AciI	CCGC	1 cut(s)	1268
AclWI	GGATC	1 cut(s)	1381
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	2 cut(s)	603, 652
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	4 cut(s)	272, 434, 589, 1355
AfiI	CCNNNNNNNGG	2 cut(s)	1140, 1192
AgsI	TTSAA	3 cut(s)	64, 133, 1536
AjnI	CCWGG	3 cut(s)	372, 534, 1408
AloI	GAACNNNNNNTCC	2 cut(s)	1230, 1262
AluBI	AGCT	9 cut(s)	218, 662, 824, 982, 1010, 1173, 1337, 1503, 1545
AluI	AGCT	9 cut(s)	218, 662, 824, 982, 1010, 1173, 1337, 1503, 1545
Alw21I	GWGCWC	4 cut(s)	826, 984, 1417, 1505
Alw26I	GTCTC	2 cut(s)	829, 865
AlwI	GGATC	1 cut(s)	1381
Ama87I	CYCGRG	2 cut(s)	206, 657
Aor13HI	TCCGGA	1 cut(s)	844
AoxI	GGCC	2 cut(s)	177, 1224
ApoI	RAATTY	2 cut(s)	603, 652
AspLEI	GCGC	3 cut(s)	110, 125, 670
AspS9I	GGNCC	3 cut(s)	326, 488, 1224
AsuC2I	CCSGG	3 cut(s)	176, 207, 208
AsuHPI	GGTGA	6 cut(s)	871, 938, 998, 1030, 1489, 1507
AvaI	CYCGRG	2 cut(s)	206, 657
AvaII	GGWCC	2 cut(s)	326, 488
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	3 cut(s)	826, 984, 1505
Bbv12I	GWGCWC	4 cut(s)	826, 984, 1417, 1505
BccI	CCATC	1 cut(s)	1424
BceAI	ACGGC	2 cut(s)	110, 810
BcgI	CGANNNNNNTGC	4 cut(s)	328, 362, 490, 524
BciT130I	CCWGG	3 cut(s)	374, 536, 1410
BciVI	GTATCC	2 cut(s)	896, 928
BclI	TGATCA	1 cut(s)	1117
BcnI	CCSGG	3 cut(s)	176, 207, 208
BcoDI	GTCTC	2 cut(s)	829, 865
BfaI	CTAG	2 cut(s)	71, 1106
BfoI	RGCGCY	2 cut(s)	111, 126
BfuI	GTATCC	2 cut(s)	896, 928
BmcAI	AGTACT	1 cut(s)	589
Bme1390I	CCNGG	6 cut(s)	176, 207, 208, 374, 536, 1410
Bme18I	GGWCC	2 cut(s)	326, 488
BmeT110I	CYCGRG	2 cut(s)	206, 657
BmgT120I	GGNCC	3 cut(s)	326, 488, 1224
BmiI	GGNNCC	3 cut(s)	124, 157, 1132
BmrFI	CCNGG	6 cut(s)	176, 207, 208, 374, 536, 1410
BmrI	ACTGGG	1 cut(s)	884
BmsI	GCATC	3 cut(s)	648, 684, 1137
BmuI	ACTGGG	1 cut(s)	884
BoxI	GACNNNNGTC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	966, 998
BpmI	CTGGAG	1 cut(s)	618
Bpu10I	CCTNAGC	2 cut(s)	266, 428
BpuEI	CTTGAG	1 cut(s)	1264
BpuMI	CCSGG	3 cut(s)	176, 207, 208
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	865
BsaJI	CCNNGG	4 cut(s)	206, 373, 535, 1408
BsaWI	WCCGGW	1 cut(s)	844
BsaXI	ACNNNNNCTCC	6 cut(s)	263, 293, 425, 455, 1115, 1145
Bsc4I	CCNNNNNNNGG	2 cut(s)	1140, 1192
Bse118I	RCCGGY	2 cut(s)	302, 464
Bse1I	ACTGG	2 cut(s)	882, 890
Bse3DI	GCAATG	3 cut(s)	678, 861, 1185
BseAI	TCCGGA	1 cut(s)	844
BseBI	CCWGG	3 cut(s)	374, 536, 1410
BseDI	CCNNGG	4 cut(s)	206, 373, 535, 1408
BseGI	GGATG	6 cut(s)	43, 92, 577, 639, 964, 1435
BseLI	CCNNNNNNNGG	2 cut(s)	1140, 1192
BseMI	GCAATG	3 cut(s)	678, 861, 1185
BseMII	CTCAG	3 cut(s)	824, 1438, 1518
BseNI	ACTGG	2 cut(s)	882, 890
BseRI	GAGGAG	1 cut(s)	944
BseYI	CCCAGC	1 cut(s)	193
BshFI	GGCC	2 cut(s)	179, 1226
BshNI	GGYRCC	1 cut(s)	122
BsiHKAI	GWGCWC	4 cut(s)	826, 984, 1417, 1505
BsiHKCI	CYCGRG	2 cut(s)	206, 657
BslFI	GGGAC	1 cut(s)	1097
BslI	CCNNNNNNNGG	2 cut(s)	1140, 1192
BsmAI	GTCTC	2 cut(s)	829, 865
BsmFI	GGGAC	1 cut(s)	1097
BsnI	GGCC	2 cut(s)	179, 1226
Bso31I	GGTCTC	1 cut(s)	865
BsoBI	CYCGRG	2 cut(s)	206, 657
Bsp1286I	GDGCHC	4 cut(s)	826, 984, 1417, 1505
Bsp13I	TCCGGA	1 cut(s)	844
Bsp143I	GATC	5 cut(s)	150, 1029, 1117, 1166, 1373
BspACI	CCGC	1 cut(s)	1268
BspANI	GGCC	2 cut(s)	179, 1226
BspCNI	CTCAG	3 cut(s)	825, 1437, 1517
BspEI	TCCGGA	1 cut(s)	844
BspLI	GGNNCC	3 cut(s)	124, 157, 1132
BspPI	GGATC	1 cut(s)	1381
BspQI	GCTCTTC	1 cut(s)	1250
BspT107I	GGYRCC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	865
BsrDI	GCAATG	3 cut(s)	678, 861, 1185
BsrFI	RCCGGY	2 cut(s)	302, 464
BsrI	ACTGG	2 cut(s)	882, 890
BssAI	RCCGGY	2 cut(s)	302, 464
BssECI	CCNNGG	4 cut(s)	206, 373, 535, 1408
BssMI	GATC	5 cut(s)	150, 1029, 1117, 1166, 1373
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	3 cut(s)	374, 536, 1410
Bst4CI	ACNGT	5 cut(s)	253, 330, 415, 492, 1384
Bst6I	CTCTTC	2 cut(s)	54, 1250
BstACI	GRCGYC	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	1189
BstC8I	GCNNGC	2 cut(s)	304, 466
BstDEI	CTNAG	7 cut(s)	223, 266, 428, 731, 833, 1424, 1504
BstF5I	GGATG	6 cut(s)	43, 92, 577, 639, 964, 1435
BstH2I	RGCGCY	2 cut(s)	111, 126
BstHHI	GCGC	3 cut(s)	110, 125, 670
BstKTI	GATC	5 cut(s)	153, 1032, 1120, 1169, 1376
BstMAI	GTCTC	2 cut(s)	829, 865
BstMBI	GATC	5 cut(s)	150, 1029, 1117, 1166, 1373
BstMWI	GCNNNNNNNGC	4 cut(s)	803, 988, 1065, 1189
BstNI	CCWGG	3 cut(s)	374, 536, 1410
BstNSI	RCATGY	1 cut(s)	1105
BstPAI	GACNNNNGTC	1 cut(s)	245
BstSCI	CCNGG	6 cut(s)	174, 205, 206, 372, 534, 1408
BstXI	CCANNNNNNTGG	2 cut(s)	923, 1350
BsuI	GTATCC	2 cut(s)	896, 928
BsuRI	GGCC	2 cut(s)	179, 1226
BtsCI	GGATG	6 cut(s)	43, 92, 577, 639, 964, 1435
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	2 cut(s)	771, 1380
Cac8I	GCNNGC	2 cut(s)	304, 466
CfoI	GCGC	3 cut(s)	110, 125, 670
Cfr10I	RCCGGY	2 cut(s)	302, 464
Cfr13I	GGNCC	3 cut(s)	326, 488, 1224
Cfr9I	CCCGGG	1 cut(s)	206
CseI	GACGC	1 cut(s)	1024
Csp6I	GTAC	4 cut(s)	271, 433, 588, 1354
CspCI	CAANNNNNGTGG	2 cut(s)	1365, 1400
CviQI	GTAC	4 cut(s)	271, 433, 588, 1354
DdeI	CTNAG	7 cut(s)	223, 266, 428, 731, 833, 1424, 1504
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	5 cut(s)	152, 1031, 1119, 1168, 1375
DpnII	GATC	5 cut(s)	150, 1029, 1117, 1166, 1373
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	2 cut(s)	54, 1250
EarI	CTCTTC	2 cut(s)	54, 1250
EciI	GGCGGA	1 cut(s)	1283
Ecl136II	GAGCTC	3 cut(s)	824, 982, 1503
Eco24I	GRGCYC	3 cut(s)	826, 984, 1505
Eco31I	GGTCTC	1 cut(s)	865
Eco32I	GATATC	1 cut(s)	1443
Eco47I	GGWCC	2 cut(s)	326, 488
Eco53kI	GAGCTC	3 cut(s)	824, 982, 1503
Eco88I	CYCGRG	2 cut(s)	206, 657
EcoICRI	GAGCTC	3 cut(s)	824, 982, 1503
EcoRI	GAATTC	1 cut(s)	652
EcoRII	CCWGG	3 cut(s)	372, 534, 1408
EcoRV	GATATC	1 cut(s)	1443
EcoT38I	GRGCYC	3 cut(s)	826, 984, 1505
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
FaqI	GGGAC	1 cut(s)	1097
FauNDI	CATATG	2 cut(s)	782, 1349
FbaI	TGATCA	1 cut(s)	1117
FokI	GGATG	6 cut(s)	30, 79, 584, 626, 951, 1442
FriOI	GRGCYC	3 cut(s)	826, 984, 1505
FspBI	CTAG	2 cut(s)	71, 1106
GlaI	GCGC	3 cut(s)	109, 124, 669
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	618
HaeII	RGCGCY	2 cut(s)	111, 126
HaeIII	GGCC	2 cut(s)	179, 1226
HgaI	GACGC	1 cut(s)	1024
HhaI	GCGC	3 cut(s)	110, 125, 670
Hin1I	GRCGYC	1 cut(s)	123
Hin6I	GCGC	3 cut(s)	108, 123, 668
HinP1I	GCGC	3 cut(s)	108, 123, 668
HinfI	GANTC	6 cut(s)	162, 317, 479, 725, 912, 1085
HphI	GGTGA	6 cut(s)	871, 938, 998, 1030, 1489, 1507
Hpy166II	GTNNAC	3 cut(s)	273, 435, 1111
Hpy188I	TCNGA	5 cut(s)	155, 292, 454, 997, 1017
Hpy188III	TCNNGA	6 cut(s)	238, 597, 657, 845, 1051, 1281
Hpy8I	GTNNAC	3 cut(s)	273, 435, 1111
HpyAV	CCTTC	2 cut(s)	68, 1002
HpyCH4III	ACNGT	5 cut(s)	253, 330, 415, 492, 1384
HpyF10VI	GCNNNNNNNGC	4 cut(s)	803, 988, 1065, 1189
HpyF3I	CTNAG	7 cut(s)	223, 266, 428, 731, 833, 1424, 1504
Hsp92I	GRCGYC	1 cut(s)	123
HspAI	GCGC	3 cut(s)	108, 123, 668
KasI	GGCGCC	1 cut(s)	122
Kpn2I	TCCGGA	1 cut(s)	844
KroI	GCCGGC	2 cut(s)	302, 464
KroNI	GCCGGC	2 cut(s)	304, 466
Ksp22I	TGATCA	1 cut(s)	1117
Kzo9I	GATC	5 cut(s)	150, 1029, 1117, 1166, 1373
LguI	GCTCTTC	1 cut(s)	1250
LmnI	GCTCC	2 cut(s)	155, 1136
LweI	GCATC	3 cut(s)	648, 684, 1137
MaeI	CTAG	2 cut(s)	71, 1106
MaeIII	GTNAC	8 cut(s)	37, 247, 409, 621, 711, 898, 1036, 1495
MalI	GATC	5 cut(s)	152, 1031, 1119, 1168, 1375
MboI	GATC	5 cut(s)	150, 1029, 1117, 1166, 1373
MboII	GAAGA	3 cut(s)	41, 78, 1237
MhlI	GDGCHC	4 cut(s)	826, 984, 1417, 1505
MluCI	AATT	6 cut(s)	201, 603, 652, 942, 969, 1522
Mly113I	GGCGCC	1 cut(s)	123
MlyI	GAGTC	3 cut(s)	326, 488, 1079
MmeI	TCCRAC	3 cut(s)	270, 432, 995
MroI	TCCGGA	1 cut(s)	844
MroNI	GCCGGC	2 cut(s)	302, 464
MseI	TTAA	2 cut(s)	1220, 1549
MslI	CAYNNNNRTG	2 cut(s)	188, 921
MspR9I	CCNGG	6 cut(s)	176, 207, 208, 374, 536, 1410
MvaI	CCWGG	3 cut(s)	374, 536, 1410
MwoI	GCNNNNNNNGC	4 cut(s)	803, 988, 1065, 1189
NaeI	GCCGGC	2 cut(s)	304, 466
NarI	GGCGCC	1 cut(s)	123
NciI	CCSGG	3 cut(s)	176, 207, 208
NdeI	CATATG	2 cut(s)	782, 1349
NdeII	GATC	5 cut(s)	150, 1029, 1117, 1166, 1373
NgoMIV	GCCGGC	2 cut(s)	302, 464
NlaIV	GGNNCC	3 cut(s)	124, 157, 1132
NmeAIII	GCCGAG	1 cut(s)	743
NmuCI	GTSAC	6 cut(s)	37, 247, 409, 898, 1036, 1495
NspI	RCATGY	1 cut(s)	1105
PaeR7I	CTCGAG	1 cut(s)	657
PciSI	GCTCTTC	1 cut(s)	1250
PcsI	WCGNNNNNNNCGW	2 cut(s)	326, 488
PdiI	GCCGGC	2 cut(s)	304, 466
PfeI	GAWTC	3 cut(s)	162, 725, 912
PleI	GAGTC	3 cut(s)	325, 487, 1079
PluTI	GGCGCC	1 cut(s)	126
PpsI	GAGTC	3 cut(s)	325, 487, 1079
PshAI	GACNNNNGTC	1 cut(s)	245
Psp124BI	GAGCTC	3 cut(s)	826, 984, 1505
Psp6I	CCWGG	3 cut(s)	372, 534, 1408
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	3 cut(s)	372, 534, 1408
PspN4I	GGNNCC	3 cut(s)	124, 157, 1132
PspPI	GGNCC	3 cut(s)	326, 488, 1224
RsaI	GTAC	4 cut(s)	272, 434, 589, 1355
RsaNI	GTAC	4 cut(s)	271, 433, 588, 1354
RseI	CAYNNNNRTG	2 cut(s)	188, 921
SacI	GAGCTC	3 cut(s)	826, 984, 1505
SapI	GCTCTTC	1 cut(s)	1250
SaqAI	TTAA	2 cut(s)	1220, 1549
Sau3AI	GATC	5 cut(s)	150, 1029, 1117, 1166, 1373
Sau96I	GGNCC	3 cut(s)	326, 488, 1224
ScaI	AGTACT	1 cut(s)	589
SchI	GAGTC	3 cut(s)	326, 488, 1079
ScrFI	CCNGG	6 cut(s)	176, 207, 208, 374, 536, 1410
SduI	GDGCHC	4 cut(s)	826, 984, 1417, 1505
SfaNI	GCATC	3 cut(s)	648, 684, 1137
SfoI	GGCGCC	1 cut(s)	124
Sfr274I	CTCGAG	1 cut(s)	657
SinI	GGWCC	2 cut(s)	326, 488
SlaI	CTCGAG	1 cut(s)	657
SmaI	CCCGGG	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	188, 921
SmlI	CTYRAG	2 cut(s)	657, 1279
SmoI	CTYRAG	2 cut(s)	657, 1279
Sse9I	AATT	6 cut(s)	201, 603, 652, 942, 969, 1522
SsiI	CCGC	1 cut(s)	1268
SspDI	GGCGCC	1 cut(s)	122
SspI	AATATT	2 cut(s)	867, 1473
SspMI	CTAG	2 cut(s)	71, 1106
SstI	GAGCTC	3 cut(s)	826, 984, 1505
StyD4I	CCNGG	6 cut(s)	174, 205, 206, 372, 534, 1408
TaaI	ACNGT	5 cut(s)	253, 330, 415, 492, 1384
TaqI	TCGA	6 cut(s)	338, 405, 500, 658, 1052, 1165
TasI	AATT	6 cut(s)	201, 603, 652, 942, 969, 1522
TatI	WGTACW	1 cut(s)	587
TfiI	GAWTC	3 cut(s)	162, 725, 912
Tru1I	TTAA	2 cut(s)	1220, 1549
Tru9I	TTAA	2 cut(s)	1220, 1549
TscAI	CASTG	2 cut(s)	771, 1387
TseFI	GTSAC	6 cut(s)	37, 247, 409, 898, 1036, 1495
Tsp45I	GTSAC	6 cut(s)	37, 247, 409, 898, 1036, 1495
TspMI	CCCGGG	1 cut(s)	206
TspRI	CASTG	2 cut(s)	771, 1387
VpaK11BI	GGWCC	2 cut(s)	326, 488
XapI	RAATTY	2 cut(s)	603, 652
XceI	RCATGY	1 cut(s)	1105
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XhoI	CTCGAG	1 cut(s)	657
XmaI	CCCGGG	1 cut(s)	206
XspI	CTAG	2 cut(s)	71, 1106
ZrmI	AGTACT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.