Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004145

Physical Location & Seq

Genomic Coordinates Forward (+)

20849762 .. 20852104

Gene Structure 2343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGACACCACAGATCAAAACTCATCTCTTGCCGAAGCAAGAACCTTCTTCGTCTGAGAACCATGGATCATCAACCTCCGGCATCGTTTTCAACGTGTCAACGAGTATAATCGGAGCCGGAATAATGTCGATGCCGGCGGCGTTTAAAGTTCTTGGAATAGTTCCAGCGTTTTTGATTATCACGATCATAGCTTGGCTTTCCACAATTTCCGTTGGATTTCTGATGAAATCAACTCTCGCCGGAGAATCAACTACTTACGCCGGAGTTATGAAAGAGTCGTTTGGTAAAACAGGATCCATCGCTGTACAGATTGCTACGATGGTTGCTACTTTTGGTTGTATGATTATATTTTCGATTATTATAGGAGATGTGCTTTCTGGTAATGAAAATGGTGGTCCTGAACATATTGGAGTTTTGCAAGAATGGTTTGGTTCTTACTGGTGGAACACGAGAATCTTCGCTTTGTTATTTGTCTACGGCTTTGTCTTGCTTCCATTGGTCCTGCGTAGACGAGTCGAAAGACTGGCAATTAGTTCCGCTGTATCGTTTCTTCTTGCGGTTCTATTTGTTGTCATAAGCTCGGTGCTGGCGATTTCCGCGCTGGTGAATGGACAAACGAAGAATCCAAGACTGTTTCCGGAGTTGAGCAATGGAGGATCGTTCTGGCAACTCTTCACAGCTTCCCCTGTTATAGTTACAGCCTTCACGTTTCACTTCAATGTTCATCCAATTGGATTCGAGCTCAAAGATCCATTACAAGTGATCCCAGCAACTAAGATCTCTGTCATCTTGTGTGCTGCTATCTACTTCGCAACTGGACTCTTTGGTTACCTTCTCTTTGGAGATGCAACTATGTCGGATATTCTAGTGAACTTTGACCAGAGCTCTGGTTCTTCCATTGGTTCTCTTCTCAACGACATTGTCAGACTCAGCTACGTGCTTCACCTCATGCTGGTCTTTCCTCTCCTGAACTTCTCATTGAGAGCAAATCTCGACGAACTCTTGTACCCCAAGAAGCCGTCCTTGGAAAAAGACACAAAAAGATTCATCGGACTCACTCTGGCTCTACTGATTTGCTGTTTCTTGTCTGCAATCGCTGTACCAGACATTTGGTACTTCTTTCAGTTCATGGGATCAACCATCACAGTCTCCATAGCATTCATATTTCCAGCCGCCATTGTTCTAAGGAATATCCATGGTGTATCAACCTCAAGAGAGAAGATCGTAGCTGCAATAATGCTTGTTCTTGCTGTTGCCACTAGCATTATTGCTATCTCGACAAATTTATACAGCCTCGCAGCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

435

Amino Acids

47.1

Weight (kDa)

8.6

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	22 - 423	5.6e-48	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	28 - 241	7.9e-08	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40420 AT3G56200
fragaria_vesca	FvH4_7g25490 FvH4_7g25490 FvH4_7g25500
malus_domestica	MD01G1161200.v1.1 MD01G1161300.v1.1 MD06G1044000.v1.1 MD07G1229200.v1.1
prunus_persica	Prupe.2G259300_v2.0.a1 Prupe.2G259400_v2.0.a1
pyrus_communis	pycom01g17700 pycom01g17710 pycom07g20740
rosa_chinensis	RchiOBHm_Chr1g0371451 RchiOBHm_Chr1g0371471
rosa_laevigata	RLG00000026959 RLG00000026960
rosa_multiflora	Rmu_sc0000809.1_g000020 Rmu_sc0000809.1_g000021 Rmu_sc0029071.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285660 Rroxscaffold_4G00285670
rosa_rugosa	Rorug01G0364100 Rorug01G0364100
rosa_samantha	Rh1AG374300 Rh1AG374400 Rh1BG337800 Rh1CG351000 Rh1CG351100 Rh1DG368800
rosa_wichuraiana	Rw1G032920 Rw1G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	474, 508
AccII	CGCG	1 cut(s)	599
AccIII	TCCGGA	1 cut(s)	637
AciI	CCGC	5 cut(s)	137, 537, 557, 597, 1173
AclWI	GGATC	7 cut(s)	73, 288, 301, 664, 743, 757, 1141
AcsI	RAATTY	1 cut(s)	1282
AfaI	GTAC	4 cut(s)	306, 1007, 1101, 1115
AfiI	CCNNNNNNNGG	1 cut(s)	952
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	91, 718
AjuI	GAANNNNNNNTTGG	2 cut(s)	1007, 1039
AluBI	AGCT	7 cut(s)	191, 579, 680, 742, 885, 933, 1229
AluI	AGCT	7 cut(s)	191, 579, 680, 742, 885, 933, 1229
Alw21I	GWGCWC	2 cut(s)	744, 887
Alw26I	GTCTC	1 cut(s)	1153
AlwI	GGATC	7 cut(s)	73, 288, 301, 664, 743, 757, 1141
Aor13HI	TCCGGA	1 cut(s)	637
ApeKI	GCWGC	3 cut(s)	797, 1229, 1298
ApoI	RAATTY	1 cut(s)	1282
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	2 cut(s)	395, 499
AsuHPI	GGTGA	2 cut(s)	616, 935
AvaII	GGWCC	2 cut(s)	395, 499
BaeI	ACNNNNGTAYC	2 cut(s)	989, 1022
BamHI	GGATCC	1 cut(s)	293
BanII	GRGCYC	2 cut(s)	744, 887
BarI	GAAGNNNNNNTAC	2 cut(s)	534, 566
BauI	CACGAG	1 cut(s)	448
Bbv12I	GWGCWC	2 cut(s)	744, 887
BbvI	GCAGC	2 cut(s)	784, 1216
BccI	CCATC	3 cut(s)	305, 313, 1148
BceAI	ACGGC	2 cut(s)	493, 1003
BcgI	CGANNNNNNTGC	2 cut(s)	837, 871
BcoDI	GTCTC	1 cut(s)	1153
BfaI	CTAG	3 cut(s)	866, 1260, 1306
BglII	AGATCT	1 cut(s)	777
BisI	GCNGC	5 cut(s)	138, 798, 1173, 1230, 1299
BlsI	GCNGC	5 cut(s)	139, 799, 1174, 1231, 1300
Bme18I	GGWCC	2 cut(s)	395, 499
BmgT120I	GGNCC	2 cut(s)	395, 499
BmiI	GGNNCC	2 cut(s)	115, 295
BmsI	GCATC	3 cut(s)	90, 120, 835
BplI	GAGNNNNNCTC	2 cut(s)	975, 1007
BpuEI	CTTGAG	1 cut(s)	1195
BsaAI	YACGTR	1 cut(s)	937
BsaJI	CCNNGG	3 cut(s)	61, 1023, 1195
BsaWI	WCCGGW	1 cut(s)	637
Bsc4I	CCNNNNNNNGG	1 cut(s)	952
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	3 cut(s)	443, 528, 820
Bse3DI	GCAATG	1 cut(s)	655
BseAI	TCCGGA	1 cut(s)	637
BseDI	CCNNGG	3 cut(s)	61, 1023, 1195
BseGI	GGATG	1 cut(s)	724
BseLI	CCNNNNNNNGG	1 cut(s)	952
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	2 cut(s)	45, 943
BseNI	ACTGG	3 cut(s)	443, 528, 820
BseXI	GCAGC	2 cut(s)	784, 1216
BseYI	CCCAGC	1 cut(s)	766
Bsh1236I	CGCG	1 cut(s)	599
BsiHKAI	GWGCWC	2 cut(s)	744, 887
BsiSI	CCGG	6 cut(s)	78, 117, 134, 240, 261, 638
BslI	CCNNNNNNNGG	1 cut(s)	952
BsmAI	GTCTC	1 cut(s)	1153
BsmI	GAATGC	1 cut(s)	1157
Bsp1286I	GDGCHC	2 cut(s)	744, 887
Bsp13I	TCCGGA	1 cut(s)	637
Bsp1407I	TGTACA	1 cut(s)	304
Bsp19I	CCATGG	2 cut(s)	61, 1195
BspACI	CCGC	5 cut(s)	137, 537, 557, 597, 1173
BspCNI	CTCAG	2 cut(s)	46, 942
BspEI	TCCGGA	1 cut(s)	637
BspFNI	CGCG	1 cut(s)	599
BspLI	GGNNCC	2 cut(s)	115, 295
BspPI	GGATC	7 cut(s)	73, 288, 301, 664, 743, 757, 1141
BsrDI	GCAATG	1 cut(s)	655
BsrFI	RCCGGY	1 cut(s)	133
BsrGI	TGTACA	1 cut(s)	304
BsrI	ACTGG	3 cut(s)	443, 528, 820
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	3 cut(s)	61, 1023, 1195
BssSI	CACGAG	1 cut(s)	448
BssT1I	CCWWGG	3 cut(s)	61, 1023, 1195
Bst2BI	CACGAG	1 cut(s)	448
Bst4CI	ACNGT	2 cut(s)	633, 1147
Bst6I	CTCTTC	2 cut(s)	677, 912
BstAUI	TGTACA	1 cut(s)	304
BstBAI	YACGTR	1 cut(s)	937
BstC8I	GCNNGC	2 cut(s)	135, 588
BstDEI	CTNAG	4 cut(s)	54, 774, 929, 1184
BstDSI	CCRYGG	2 cut(s)	61, 1195
BstEII	GGTNACC	1 cut(s)	827
BstF5I	GGATG	1 cut(s)	724
BstFNI	CGCG	1 cut(s)	599
BstHHI	GCGC	1 cut(s)	601
BstMAI	GTCTC	1 cut(s)	1153
BstMWI	GCNNNNNNNGC	1 cut(s)	596
BstPI	GGTNACC	1 cut(s)	827
BstUI	CGCG	1 cut(s)	599
BstV1I	GCAGC	2 cut(s)	784, 1216
BstX2I	RGATCY	3 cut(s)	293, 748, 777
BstXI	CCANNNNNNTGG	2 cut(s)	887, 1110
BstYI	RGATCY	3 cut(s)	293, 748, 777
BtgI	CCRYGG	2 cut(s)	61, 1195
BtgZI	GCGATG	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	724
Cac8I	GCNNGC	2 cut(s)	135, 588
CfoI	GCGC	1 cut(s)	601
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	395, 499
Csp6I	GTAC	4 cut(s)	305, 1006, 1100, 1114
CviAII	CATG	4 cut(s)	62, 949, 1129, 1196
CviQI	GTAC	4 cut(s)	305, 1006, 1100, 1114
DdeI	CTNAG	4 cut(s)	54, 774, 929, 1184
DraI	TTTAAA	1 cut(s)	145
Eam1104I	CTCTTC	2 cut(s)	677, 912
EarI	CTCTTC	2 cut(s)	677, 912
Ecl136II	GAGCTC	2 cut(s)	742, 885
Eco130I	CCWWGG	3 cut(s)	61, 1023, 1195
Eco24I	GRGCYC	2 cut(s)	744, 887
Eco47I	GGWCC	2 cut(s)	395, 499
Eco53kI	GAGCTC	2 cut(s)	742, 885
Eco91I	GGTNACC	1 cut(s)	827
EcoICRI	GAGCTC	2 cut(s)	742, 885
EcoO65I	GGTNACC	1 cut(s)	827
EcoT14I	CCWWGG	3 cut(s)	61, 1023, 1195
EcoT38I	GRGCYC	2 cut(s)	744, 887
ErhI	CCWWGG	3 cut(s)	61, 1023, 1195
FaeI	CATG	4 cut(s)	65, 952, 1132, 1199
FalI	AAGNNNNNCTT	2 cut(s)	1007, 1039
FatI	CATG	4 cut(s)	61, 948, 1128, 1195
FblI	GTMKAC	2 cut(s)	474, 508
Fnu4HI	GCNGC	5 cut(s)	138, 798, 1173, 1230, 1299
FokI	GGATG	1 cut(s)	711
FriOI	GRGCYC	2 cut(s)	744, 887
Fsp4HI	GCNGC	5 cut(s)	138, 798, 1173, 1230, 1299
FspBI	CTAG	3 cut(s)	866, 1260, 1306
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	5 cut(s)	138, 798, 1173, 1230, 1299
GsaI	CCCAGC	1 cut(s)	770
HapII	CCGG	6 cut(s)	78, 117, 134, 240, 261, 638
HhaI	GCGC	1 cut(s)	601
Hin1II	CATG	4 cut(s)	65, 952, 1132, 1199
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HpaII	CCGG	6 cut(s)	78, 117, 134, 240, 261, 638
HphI	GGTGA	2 cut(s)	616, 935
Hpy166II	GTNNAC	4 cut(s)	99, 475, 509, 871
Hpy188I	TCNGA	6 cut(s)	55, 113, 222, 859, 926, 1052
Hpy188III	TCNNGA	7 cut(s)	181, 398, 638, 967, 992, 1212, 1276
Hpy8I	GTNNAC	4 cut(s)	99, 475, 509, 871
Hpy99I	CGWCG	1 cut(s)	998
HpyAV	CCTTC	3 cut(s)	54, 712, 842
HpyCH4III	ACNGT	2 cut(s)	633, 1147
HpyCH4IV	ACGT	3 cut(s)	93, 707, 936
HpyCH4V	TGCA	4 cut(s)	418, 848, 1091, 1232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	596
HpyF3I	CTNAG	4 cut(s)	54, 774, 929, 1184
HpySE526I	ACGT	3 cut(s)	93, 707, 936
Hsp92II	CATG	4 cut(s)	65, 952, 1132, 1199
HspAI	GCGC	1 cut(s)	599
Kpn2I	TCCGGA	1 cut(s)	637
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	2 cut(s)	784, 1216
LweI	GCATC	3 cut(s)	90, 120, 835
MaeI	CTAG	3 cut(s)	866, 1260, 1306
MaeII	ACGT	3 cut(s)	93, 707, 936
MaeIII	GTNAC	2 cut(s)	694, 827
MboII	GAAGA	8 cut(s)	39, 448, 542, 631, 664, 885, 899, 1231
MfeI	CAATTG	1 cut(s)	729
MflI	RGATCY	3 cut(s)	293, 748, 777
MhlI	GDGCHC	2 cut(s)	744, 887
MluCI	AATT	4 cut(s)	204, 528, 729, 1282
MlyI	GAGTC	5 cut(s)	284, 522, 813, 921, 1047
MmeI	TCCRAC	2 cut(s)	193, 837
MnlI	CCTC	6 cut(s)	85, 647, 956, 972, 1219, 1304
MroI	TCCGGA	1 cut(s)	637
MroNI	GCCGGC	1 cut(s)	133
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	717
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	6 cut(s)	78, 117, 134, 240, 261, 638
MunI	CAATTG	1 cut(s)	729
Mva1269I	GAATGC	1 cut(s)	1157
MvnI	CGCG	1 cut(s)	599
MwoI	GCNNNNNNNGC	1 cut(s)	596
NaeI	GCCGGC	1 cut(s)	135
NcoI	CCATGG	2 cut(s)	61, 1195
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	4 cut(s)	65, 952, 1132, 1199
NlaIV	GGNNCC	2 cut(s)	115, 295
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 587
PctI	GAATGC	1 cut(s)	1157
PdiI	GCCGGC	1 cut(s)	135
PfeI	GAWTC	5 cut(s)	245, 453, 622, 735, 1044
PflFI	GACNNNGTC	1 cut(s)	920
PkrI	GCNGC	5 cut(s)	139, 799, 1174, 1231, 1300
PleI	GAGTC	5 cut(s)	283, 521, 813, 921, 1047
PpsI	GAGTC	5 cut(s)	283, 521, 813, 921, 1047
Ppu21I	YACGTR	1 cut(s)	937
Psp124BI	GAGCTC	2 cut(s)	744, 887
PspEI	GGTNACC	1 cut(s)	827
PspFI	CCCAGC	1 cut(s)	766
PspN4I	GGNNCC	2 cut(s)	115, 295
PspPI	GGNCC	2 cut(s)	395, 499
PsuI	RGATCY	3 cut(s)	293, 748, 777
PsyI	GACNNNGTC	1 cut(s)	920
RsaI	GTAC	4 cut(s)	306, 1007, 1101, 1115
RsaNI	GTAC	4 cut(s)	305, 1006, 1100, 1114
RseI	CAYNNNNRTG	1 cut(s)	717
SacI	GAGCTC	2 cut(s)	744, 887
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	5 cut(s)	138, 798, 1173, 1230, 1299
Sau96I	GGNCC	2 cut(s)	395, 499
SchI	GAGTC	5 cut(s)	284, 522, 813, 921, 1047
SduI	GDGCHC	2 cut(s)	744, 887
SfaNI	GCATC	3 cut(s)	90, 120, 835
SinI	GGWCC	2 cut(s)	395, 499
SmiMI	CAYNNNNRTG	1 cut(s)	717
SmlI	CTYRAG	1 cut(s)	1210
SmoI	CTYRAG	1 cut(s)	1210
Sse9I	AATT	4 cut(s)	204, 528, 729, 1282
SsiI	CCGC	5 cut(s)	137, 537, 557, 597, 1173
SspMI	CTAG	3 cut(s)	866, 1260, 1306
SstI	GAGCTC	2 cut(s)	744, 887
StyI	CCWWGG	3 cut(s)	61, 1023, 1195
TaaI	ACNGT	2 cut(s)	633, 1147
TaiI	ACGT	3 cut(s)	96, 710, 939
TaqI	TCGA	6 cut(s)	128, 353, 516, 738, 993, 1277
TasI	AATT	4 cut(s)	204, 528, 729, 1282
TatI	WGTACW	1 cut(s)	304
TauI	GCSGC	2 cut(s)	140, 1175
TfiI	GAWTC	5 cut(s)	245, 453, 622, 735, 1044
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	3 cut(s)	797, 1229, 1298
TspDTI	ATGAA	7 cut(s)	239, 284, 399, 713, 1036, 1117, 1150
TspGWI	ACGGA	1 cut(s)	199
Tth111I	GACNNNGTC	1 cut(s)	920
VpaK11BI	GGWCC	2 cut(s)	395, 499
XapI	RAATTY	1 cut(s)	1282
XmiI	GTMKAC	2 cut(s)	474, 508
XspI	CTAG	3 cut(s)	866, 1260, 1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.