AT2G41560

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002172
Physical Location & Seq
Reverse (-)
17332050 .. 17337492
5443 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41560.4

Sequence Viewer

Length: 3093 bp
ATGTCGAACTTGCTAAGGGATTTCGAGGTGGAGGCTAAGAATCCGTCGCTGGAAGCGCGTCAAAGATGGAGGTCGTCCGTGTCTATCGTGAAGAACCGTACTCGTCGTTTCCGTAACATTCGGGATCTCGATAAGCTCGCTGACTACGAGAACAAGAAGCACCAGATCCAGGAAAAGATCCGAGTTGCTTTCTTTGTTCAAAAGGCAGCTCTTCATTTCATTGATGCTGCTGCTAGGCCGGAATACAAGCTCACTGATGAGGTTAAGAAAGCCGGATTTTCTATTGAAGCAGATGAACTTGCATCTATGGTTCGCAAAAATGACACTAAGAGCCTGGCACAGAAAGGTGGAGTTGAAGAACTTGCTAAAAAAGTATCTGTATCTCTCTCTGAAGGCATTCGTTCGAGTGAAGTGCCCATTAGGGAAAAGATATTTGGAGAAAATCGTTATACTGAGAAACCAGCCAGATCATTCTTAATGTTTGTGTGGGAAGCGCTCCACGACATAACCCTTATCATTCTTATGGTCTGCGCTGTAGTATCAATAGGTGTGGGTGTTGCTACAGAAGGATTTCCAAGGGGAATGTATGATGGGACAGGGATCTTGCTAAGTATACTCTTGGTGGTCATGGTTACTGCGATCAGTGATTACAAGCAATCTTTGCAGTTCAGAGACTTGGATCGAGAGAAGAAGAAGATTATTGTCCAGGTCACCAGAGATGGGAGCAGACAAGAAATCTCCATTCATGACTTGGTCGTTGGAGATGTAGTTCATCTATCTATTGGGGATCAAGTTCCAGCTGATGGGATTTTTATATCTGGATACAACTTGGAGATAGACGAGTCAAGCTTATCGGGTGAGAGTGAACCGTCACATGTGAATAAAGAGAAGCCTTTTCTGCTTTCAGGAACCAAAGTACAAAACGGTTCTGCAAAAATGCTGGTGACAACAGTTGGTATGAGGACTGAGTGGGGAAAGTTGATGGAAACGCTGGTTGATGGTGGAGAAGATGAGACGCCTCTGCAGGTGAAGCTAAATGGGGTTGCAACAATCATTGGTAAGATTGGTTTAAGCTTTGCTGTGCTTACATTTGTGGTATTGTGCATAAGGTTTGTCTTGGACAAAGCAACGTCTGGTAGCTTCACCAACTGGTCATCTGAAGATGCATTGACGCTACTTGACTACTTTGCAATTTCTGTAACTATCATTGTCGTTGCCGTGCCCGAAGGTTTGCCACTGGCAGTGACCTTAAGTTTGGCATTTGCTATGAAGAAGCTGATGAGTGACAGGGCACTTGTGAGGCATCTTGCTGCATGTGAGACTATGGGTTCTTCTACTTGCATCTGCACTGATAAGACAGGGACCTTAACTACTAATCACATGGTGGTCAACAAAGTATGGATCTGTGATAAGGTTCAAGAGAGGCAAGAGGGAAGTAAAGAAAGCTTTGAGTTGGAACTATCGGAAGAAGTTCAGAGCACTCTTTTGCAGGGTATATTTCAGAACACTGGTTCGGAAGTTGTTAAGGATAAAGATGGAAACACTCAGATCCTAGGATCCCCGACAGAAAGAGCAATACTCGAATTCGGTTTACTTTTAGGTGGTGATTTTAACACGCAGCGTAAAGAGCATAAGATACTCAAGATTGAGCCGTTCAATTCAGACAAGAAGAAAATGTCTGTTCTTATAGCTCTTCCTGGAGGTGGTGCACGGGCTTTCTGCAAAGGGGCATCTGAAATAGTGTTGAAAATGTGTGAGAATGTTGTGGATTCAAACGGAGAATCGGTTCCGCTAACTGAAGAACGGATTACGAGTATCTCTGATATCATAGAGGGTTTTGCCTCAGAGGCTCTGAGGACTCTCTGCTTGGTTTACAAAGATCTAGATGAAGCTCCCAGTGGAGAGCTCCCTGATGGAGGCTATACAATGGTAGCAGTTGTTGGAATCAAGGATCCAGTACGTCCGGGTGTTAGGGAAGCCGTTCAGACTTGTCAAGCTGCCGGAATCACCGTCCGTATGGTCACTGGAGATAACATAAGCACAGCCAAAGCAATTGCTAAGGAATGTGGCATATATACCGAAGGAGGCTTAGCTATAGAAGGTTCAGAATTCCGGGACTTGTCTCCTCACGAAATGAGGGCCATTATCCCCAAAATTCAGGTAATGGCTCGGTCTCTGCCATTGGACAAACATACTTTAGTCAGCAACTTGAGGAAAATTGGAGAGGTAGTTGCAGTGACAGGGGATGGGACAAACGATGCCCCTGCGTTGCATGAGGCAGACATTGGACTAGCAATGGGAATAGCTGGAACAGAGGTTGCGAAAGAGAATGCTGATGTGATCATAATGGACGATAACTTCAAAACAATAGTAAATGTGGCTAGATGGGGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGGATCTGCTCCACTCACTGCTGTGCAACTGCTTTGGGTCAACATGATCATGGACACACTTGGTGCATTGGCTCTAGCAACAGAACCTCCCAATGAAGGTTTAATGAAACGTGCACCAATAGCTAGAACCGCCAGCTTTATCACCAAAACCATGTGGAGAAACATCGCTGGTCAAAGCGTTTACCAGTTGATTGTCTTAGGAATTCTCAATTTCGCAGGCAAATCACTTCTCAAACTAGATGGCCCTGACTCCACAGCCGTTCTTAACACAGTCATCTTCAACTCCTTCGTCTTTTGCCAGGTGTTCAATGAGATCAATAGCCGGGAAATAGAGAAGATAAATGTGTTCAAAGGAATGTTCAATAGCTGGGTGTTCACTTGGGTAATGACTGTGACGGTAGTGTTTCAAGTGATCATAGTGGAGTTTCTTGGAGCATTTGCTAGCACCGTTCCTCTGAGCTGGCAACATTGGTTACTATCAATCTTGATAGGATCATTGAACATGATTGTAGCCGTTATCCTCAAATGCGTACCTGTCGAGTCTCGTCACCATCACGATGGCTACGACCTGCTTCCTTCTGGTCCTTCTTCTTCCAACTCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009624 GO:0009628 GO:0009705 GO:0010035 GO:0010941 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055081 GO:0055085 GO:0060548 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098542 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1030

Amino Acids

112.75

Weight (kDa)

5.77

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 13 - 79 4.4e-15 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 130 - 228 1.1e-23 P-type ATPase actuator domain
Cation_ATPase PF13246 392 - 553 5.6e-33 P-type ATPase, cytoplasmic domain N
Hydrolase PF00702 540 - 659 2.8e-13 haloacid dehalogenase-like hydrolase
Cation_ATPase_C PF00689 730 - 902 3.9e-42 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1015
Acc36I ACCTGC 2 cut(s) 1015, 3063
AccB7I CCANNNNNTGG 1 cut(s) 803
AccI GTMKAC 1 cut(s) 613
AccII CGCG 1 cut(s) 58
AciI CCGC 2 cut(s) 1790, 2616
AcsI RAATTY 4 cut(s) 1583, 2108, 2154, 2688
AcuI CTGAAG 3 cut(s) 411, 1179, 1818
AcyI GRCGYC 1 cut(s) 1016
AdeI CACNNNGTG 2 cut(s) 1384, 2549
AfaI GTAC 4 cut(s) 100, 918, 1959, 3018
AfeI AGCGCT 1 cut(s) 495
AfiI CCNNNNNNNGG 6 cut(s) 169, 720, 803, 1703, 1916, 2582
AflII CTTAAG 1 cut(s) 1249
AflIII ACRYGT 1 cut(s) 874
AjiI CACGTC 1 cut(s) 2393
AjnI CCWGG 5 cut(s) 168, 333, 705, 1696, 2784
AjuI GAANNNNNNNTTGG 2 cut(s) 417, 449
AleI CACNNNNGTG 1 cut(s) 2507
AloI GAACNNNNNNTCC 4 cut(s) 753, 785, 1770, 1802
Alw21I GWGCWC 4 cut(s) 1481, 1711, 1908, 2602
Alw26I GTCTC 7 cut(s) 666, 1007, 1313, 2127, 2178, 2476, 3033
Alw44I GTGCAC 2 cut(s) 1707, 2598
AlwNI CAGNNNCTG 1 cut(s) 2492
Aor51HI AGCGCT 1 cut(s) 495
AoxI GGCC 3 cut(s) 236, 2139, 2728
ApaLI GTGCAC 2 cut(s) 1707, 2598
ApeKI GCWGC 6 cut(s) 206, 227, 230, 1310, 1618, 1997
ApoI RAATTY 4 cut(s) 1583, 2108, 2154, 2688
ArsI GACNNNNNNTTYG 2 cut(s) 1237, 1269
Asp700I GAANNNNTTC 5 cut(s) 396, 570, 1470, 1785, 1980
AspA2I CCTAGG 1 cut(s) 1552
AspLEI GCGC 3 cut(s) 58, 496, 533
AspS9I GGNCC 4 cut(s) 1362, 2139, 2729, 3068
AsuC2I CCSGG 3 cut(s) 1965, 2114, 2810
AsuHPI GGTGA 9 cut(s) 703, 869, 955, 1039, 1135, 1616, 1999, 2620, 3026
AsuNHI GCTAGC 1 cut(s) 2927
AvaII GGWCC 2 cut(s) 1362, 3068
AvrII CCTAGG 1 cut(s) 1552
BaeGI GKGCMC 5 cut(s) 417, 1224, 1294, 1711, 2602
BamHI GGATCC 2 cut(s) 1556, 1951
BanII GRGCYC 1 cut(s) 1908
Bbv12I GWGCWC 4 cut(s) 1481, 1711, 1908, 2602
BbvI GCAGC 6 cut(s) 214, 217, 218, 1297, 1630, 1984
BceAI ACGGC 5 cut(s) 1202, 1636, 1964, 2729, 2984
BcgI CGANNNNNNTGC 4 cut(s) 394, 428, 2246, 2280
BciT130I CCWGG 5 cut(s) 170, 335, 707, 1698, 2786
BciVI GTATCC 1 cut(s) 815
BclI TGATCA 4 cut(s) 2340, 2457, 2532, 2898
BcnI CCSGG 3 cut(s) 1965, 2114, 2810
BcoDI GTCTC 7 cut(s) 666, 1007, 1313, 2127, 2178, 2476, 3033
BfaI CTAG 9 cut(s) 234, 1553, 1883, 2291, 2382, 2561, 2610, 2723, 2928
BfmI CTRYAG 4 cut(s) 534, 561, 1022, 2094
BfoI RGCGCY 1 cut(s) 497
BfrI CTTAAG 1 cut(s) 1249
BfuAI ACCTGC 2 cut(s) 1015, 3063
BfuI GTATCC 1 cut(s) 815
BglI GCCNNNNNGGC 1 cut(s) 1847
BglII AGATCT 1 cut(s) 1879
BisI GCNGC 6 cut(s) 207, 228, 231, 1311, 1619, 1998
BlnI CCTAGG 1 cut(s) 1552
BlpI GCTNAGC 1 cut(s) 2089
BlsI GCNGC 6 cut(s) 208, 229, 232, 1312, 1620, 1999
Bme1390I CCNGG 8 cut(s) 170, 335, 707, 1698, 1965, 2114, 2786, 2810
Bme18I GGWCC 2 cut(s) 1362, 3068
BmgBI CACGTC 1 cut(s) 2393
BmgT120I GGNCC 4 cut(s) 1362, 2139, 2729, 3068
BmiI GGNNCC 5 cut(s) 910, 1363, 1558, 1788, 1953
BmrFI CCNGG 8 cut(s) 170, 335, 707, 1698, 1965, 2114, 2786, 2810
BmrI ACTGGG 1 cut(s) 1890
BmsI GCATC 8 cut(s) 214, 311, 1153, 1312, 1350, 1739, 2248, 2490
BmtI GCTAGC 1 cut(s) 2931
BmuI ACTGGG 1 cut(s) 1890
BplI GAGNNNNNCTC 2 cut(s) 1563, 1595
BpmI CTGGAG 2 cut(s) 1719, 2046
Bpu10I CCTNAGC 2 cut(s) 14, 2058
Bpu1102I GCTNAGC 1 cut(s) 2089
BpuEI CTTGAG 2 cut(s) 1625, 2230
BpuMI CCSGG 3 cut(s) 1965, 2114, 2810
BsaHI GRCGYC 1 cut(s) 1016
BsaI GGTCTC 1 cut(s) 2178
BsaJI CCNNGG 2 cut(s) 575, 1552
BsaXI ACNNNNNCTCC 8 cut(s) 753, 783, 1770, 1800, 2214, 2244, 2557, 2587
Bsc4I CCNNNNNNNGG 6 cut(s) 169, 720, 803, 1703, 1916, 2582
Bse1I ACTGG 7 cut(s) 1154, 1242, 1513, 1896, 1955, 2029, 2671
Bse3DI GCAATG 1 cut(s) 2301
BseBI CCWGG 5 cut(s) 170, 335, 707, 1698, 2786
BseDI CCNNGG 2 cut(s) 575, 1552
BseGI GGATG 1 cut(s) 2251
BseLI CCNNNNNNNGG 6 cut(s) 169, 720, 803, 1703, 1916, 2582
BseMI GCAATG 1 cut(s) 2301
BseMII CTCAG 6 cut(s) 444, 957, 1559, 1844, 1857, 2933
BseNI ACTGG 7 cut(s) 1154, 1242, 1513, 1896, 1955, 2029, 2671
BseRI GAGGAG 1 cut(s) 2115
BseSI GKGCMC 5 cut(s) 417, 1224, 1294, 1711, 2602
BseXI GCAGC 6 cut(s) 214, 217, 218, 1297, 1630, 1984
BseYI CCCAGC 1 cut(s) 2853
BsgI GTGCAG 1 cut(s) 1330
Bsh1236I CGCG 1 cut(s) 58
BshFI GGCC 3 cut(s) 238, 2141, 2730
BsiHKAI GWGCWC 4 cut(s) 1481, 1711, 1908, 2602
BsiSI CCGG 6 cut(s) 239, 273, 1964, 2001, 2113, 2809
BslFI GGGAC 5 cut(s) 607, 1375, 2129, 2263, 2403
BslI CCNNNNNNNGG 6 cut(s) 169, 720, 803, 1703, 1916, 2582
BsmAI GTCTC 7 cut(s) 666, 1007, 1313, 2127, 2178, 2476, 3033
BsmBI CGTCTC 1 cut(s) 1007
BsmFI GGGAC 5 cut(s) 607, 1375, 2129, 2263, 2403
BsmI GAATGC 2 cut(s) 396, 2335
BsnI GGCC 3 cut(s) 238, 2141, 2730
Bso31I GGTCTC 1 cut(s) 2178
Bsp1286I GDGCHC 7 cut(s) 417, 1224, 1294, 1481, 1711, 1908, 2602
Bsp1720I GCTNAGC 1 cut(s) 2089
BspACI CCGC 2 cut(s) 1790, 2616
BspANI GGCC 3 cut(s) 238, 2141, 2730
BspCNI CTCAG 6 cut(s) 445, 958, 1558, 1845, 1856, 2934
BspFNI CGCG 1 cut(s) 58
BspHI TCATGA 1 cut(s) 745
BspLI GGNNCC 5 cut(s) 910, 1363, 1558, 1788, 1953
BspMAI CTGCAG 1 cut(s) 1026
BspMI ACCTGC 2 cut(s) 1015, 3063
BspOI GCTAGC 1 cut(s) 2931
BspQI GCTCTTC 2 cut(s) 216, 1698
BspTI CTTAAG 1 cut(s) 1249
BspTNI GGTCTC 1 cut(s) 2178
BsrDI GCAATG 1 cut(s) 2301
BsrI ACTGG 7 cut(s) 1154, 1242, 1513, 1896, 1955, 2029, 2671
BssECI CCNNGG 2 cut(s) 575, 1552
BssNAI GTATAC 1 cut(s) 614
BssNI GRCGYC 1 cut(s) 1016
BssT1I CCWWGG 2 cut(s) 575, 1552
Bst1107I GTATAC 1 cut(s) 614
Bst2UI CCWGG 5 cut(s) 170, 335, 707, 1698, 2786
Bst6I CTCTTC 2 cut(s) 216, 1698
BstACI GRCGYC 1 cut(s) 1016
BstAFI CTTAAG 1 cut(s) 1249
BstAPI GCANNNNNTGC 1 cut(s) 661
BstC8I GCNNGC 6 cut(s) 138, 2479, 2620, 2704, 2929, 2948
BstEII GGTNACC 1 cut(s) 709
BstENI CCTNNNNNAGG 1 cut(s) 1914
BstF5I GGATG 1 cut(s) 2251
BstFNI CGCG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 3 cut(s) 58, 496, 533
BstMAI GTCTC 7 cut(s) 666, 1007, 1313, 2127, 2178, 2476, 3033
BstMWI GCNNNNNNNGC 8 cut(s) 55, 661, 898, 1030, 1627, 1847, 2606, 2615
BstNI CCWGG 5 cut(s) 170, 335, 707, 1698, 2786
BstNSI RCATGY 2 cut(s) 878, 1317
BstPI GGTNACC 1 cut(s) 709
BstSCI CCNGG 8 cut(s) 168, 333, 705, 1696, 1963, 2112, 2784, 2808
BstSFI CTRYAG 4 cut(s) 534, 561, 1022, 2094
BstSLI GKGCMC 5 cut(s) 417, 1224, 1294, 1711, 2602
BstUI CGCG 1 cut(s) 58
BstV1I GCAGC 6 cut(s) 214, 217, 218, 1297, 1630, 1984
BstXI CCANNNNNNTGG 1 cut(s) 3044
BstZ17I GTATAC 1 cut(s) 614
BsuI GTATCC 1 cut(s) 815
BsuRI GGCC 3 cut(s) 238, 2141, 2730
BtgZI GCGATG 1 cut(s) 2635
BtrI CACGTC 1 cut(s) 2393
BtsCI GGATG 1 cut(s) 2251
BtsI GCAGTG 3 cut(s) 1248, 2241, 2502
BveI ACCTGC 2 cut(s) 1015, 3063
Cac8I GCNNGC 6 cut(s) 138, 2479, 2620, 2704, 2929, 2948
CaiI CAGNNNCTG 1 cut(s) 2492
CciI TCATGA 1 cut(s) 745
CfoI GCGC 3 cut(s) 58, 496, 533
Cfr13I GGNCC 4 cut(s) 1362, 2139, 2729, 3068
CseI GACGC 3 cut(s) 47, 1024, 1180
Csp6I GTAC 4 cut(s) 99, 917, 1958, 3017
CspCI CAANNNNNGTGG 2 cut(s) 531, 566
CviQI GTAC 4 cut(s) 99, 917, 1958, 3017
DraIII CACNNNGTG 2 cut(s) 1384, 2549
Eam1104I CTCTTC 2 cut(s) 216, 1698
EarI CTCTTC 2 cut(s) 216, 1698
Ecl136II GAGCTC 1 cut(s) 1906
Eco130I CCWWGG 2 cut(s) 575, 1552
Eco24I GRGCYC 1 cut(s) 1908
Eco31I GGTCTC 1 cut(s) 2178
Eco32I GATATC 1 cut(s) 1825
Eco47I GGWCC 2 cut(s) 1362, 3068
Eco47III AGCGCT 1 cut(s) 495
Eco53kI GAGCTC 1 cut(s) 1906
Eco57I CTGAAG 3 cut(s) 411, 1179, 1818
Eco91I GGTNACC 1 cut(s) 709
EcoICRI GAGCTC 1 cut(s) 1906
EcoNI CCTNNNNNAGG 1 cut(s) 1914
EcoO109I RGGNCCY 1 cut(s) 1362
EcoO65I GGTNACC 1 cut(s) 709
EcoRI GAATTC 3 cut(s) 1583, 2108, 2688
EcoRII CCWGG 5 cut(s) 168, 333, 705, 1696, 2784
EcoRV GATATC 1 cut(s) 1825
EcoT14I CCWWGG 2 cut(s) 575, 1552
EcoT22I ATGCAT 1 cut(s) 1168
EcoT38I GRGCYC 1 cut(s) 1908
ErhI CCWWGG 2 cut(s) 575, 1552
Esp3I CGTCTC 1 cut(s) 1007
FaqI GGGAC 5 cut(s) 607, 1375, 2129, 2263, 2403
FbaI TGATCA 4 cut(s) 2340, 2457, 2532, 2898
FblI GTMKAC 1 cut(s) 613
Fnu4HI GCNGC 6 cut(s) 207, 228, 231, 1311, 1619, 1998
FokI GGATG 1 cut(s) 2258
FriOI GRGCYC 1 cut(s) 1908
Fsp4HI GCNGC 6 cut(s) 207, 228, 231, 1311, 1619, 1998
FspBI CTAG 9 cut(s) 234, 1553, 1883, 2291, 2382, 2561, 2610, 2723, 2928
GlaI GCGC 3 cut(s) 57, 495, 532
GluI GCNGC 6 cut(s) 207, 228, 231, 1311, 1619, 1998
GsaI CCCAGC 1 cut(s) 2857
GsuI CTGGAG 2 cut(s) 1719, 2046
HaeII RGCGCY 1 cut(s) 497
HaeIII GGCC 3 cut(s) 238, 2141, 2730
HapII CCGG 6 cut(s) 239, 273, 1964, 2001, 2113, 2809
HgaI GACGC 3 cut(s) 47, 1024, 1180
HhaI GCGC 3 cut(s) 58, 496, 533
Hin1I GRCGYC 1 cut(s) 1016
Hin6I GCGC 3 cut(s) 56, 494, 531
HinP1I GCGC 3 cut(s) 56, 494, 531
HincII GTYRAC 2 cut(s) 1390, 2527
HindII GTYRAC 2 cut(s) 1390, 2527
HindIII AAGCTT 3 cut(s) 847, 1072, 1444
HinfI GANTC 9 cut(s) 40, 842, 1769, 1781, 1858, 1944, 2004, 2735, 3026
HpaII CCGG 6 cut(s) 239, 273, 1964, 2001, 2113, 2809
HphI GGTGA 9 cut(s) 703, 869, 955, 1039, 1135, 1616, 1999, 2620, 3026
Hpy99I CGWCG 2 cut(s) 49, 108
HpyAV CCTTC 9 cut(s) 386, 560, 1220, 2075, 2093, 2576, 2782, 3072, 3081
HpyCH4IV ACGT 4 cut(s) 1130, 1960, 2392, 2596
HpyF10VI GCNNNNNNNGC 8 cut(s) 55, 661, 898, 1030, 1627, 1847, 2606, 2615
HpySE526I ACGT 4 cut(s) 1130, 1960, 2392, 2596
Hsp92I GRCGYC 1 cut(s) 1016
HspAI GCGC 3 cut(s) 56, 494, 531
Ksp22I TGATCA 4 cut(s) 2340, 2457, 2532, 2898
LguI GCTCTTC 2 cut(s) 216, 1698
LmnI GCTCC 6 cut(s) 501, 723, 1897, 1911, 2500, 2918
Lsp1109I GCAGC 6 cut(s) 214, 217, 218, 1297, 1630, 1984
LweI GCATC 8 cut(s) 214, 311, 1153, 1312, 1350, 1739, 2248, 2490
MaeI CTAG 9 cut(s) 234, 1553, 1883, 2291, 2382, 2561, 2610, 2723, 2928
MaeII ACGT 4 cut(s) 1130, 1960, 2392, 2596
MfeI CAATTG 1 cut(s) 2052
MhlI GDGCHC 7 cut(s) 417, 1224, 1294, 1481, 1711, 1908, 2602
MluCI AATT 9 cut(s) 1191, 1583, 1657, 2052, 2108, 2154, 2217, 2688, 2695
MlyI GAGTC 4 cut(s) 851, 1852, 2729, 3035
MmeI TCCRAC 3 cut(s) 739, 1434, 1921
Mph1103I ATGCAT 1 cut(s) 1168
MroXI GAANNNNTTC 5 cut(s) 396, 570, 1470, 1785, 1980
MslI CAYNNNNRTG 4 cut(s) 521, 2507, 2534, 3042
MspA1I CMGCKG 1 cut(s) 800
MspCI CTTAAG 1 cut(s) 1249
MspI CCGG 6 cut(s) 239, 273, 1964, 2001, 2113, 2809
MspR9I CCNGG 8 cut(s) 170, 335, 707, 1698, 1965, 2114, 2786, 2810
MunI CAATTG 1 cut(s) 2052
Mva1269I GAATGC 2 cut(s) 396, 2335
MvaI CCWGG 5 cut(s) 170, 335, 707, 1698, 2786
MvnI CGCG 1 cut(s) 58
MwoI GCNNNNNNNGC 8 cut(s) 55, 661, 898, 1030, 1627, 1847, 2606, 2615
NciI CCSGG 3 cut(s) 1965, 2114, 2810
NheI GCTAGC 1 cut(s) 2927
NlaIV GGNNCC 5 cut(s) 910, 1363, 1558, 1788, 1953
NmuCI GTSAC 9 cut(s) 709, 870, 943, 1243, 1283, 2020, 2236, 2878, 3032
NsiI ATGCAT 1 cut(s) 1168
NspI RCATGY 2 cut(s) 878, 1317
OliI CACNNNNGTG 1 cut(s) 2507
PagI TCATGA 1 cut(s) 745
PaqCI CACCTGC 1 cut(s) 1015
PciI ACATGT 1 cut(s) 874
PciSI GCTCTTC 2 cut(s) 216, 1698
PcsI WCGNNNNNNNCGW 3 cut(s) 109, 144, 3048
PctI GAATGC 2 cut(s) 396, 2335
PdmI GAANNNNTTC 5 cut(s) 396, 570, 1470, 1785, 1980
PfeI GAWTC 5 cut(s) 40, 1769, 1781, 1944, 2004
PflFI GACNNNGTC 1 cut(s) 752
PflMI CCANNNNNTGG 1 cut(s) 803
PfoI TCCNGGA 3 cut(s) 168, 1696, 2112
PkrI GCNGC 6 cut(s) 208, 229, 232, 1312, 1620, 1999
PleI GAGTC 4 cut(s) 850, 1852, 2729, 3034
PpsI GAGTC 4 cut(s) 850, 1852, 2729, 3034
PpuMI RGGWCCY 1 cut(s) 1362
PscI ACATGT 1 cut(s) 874
Psp124BI GAGCTC 1 cut(s) 1908
Psp5II RGGWCCY 1 cut(s) 1362
Psp6I CCWGG 5 cut(s) 168, 333, 705, 1696, 2784
PspEI GGTNACC 1 cut(s) 709
PspFI CCCAGC 1 cut(s) 2853
PspGI CCWGG 5 cut(s) 168, 333, 705, 1696, 2784
PspN4I GGNNCC 5 cut(s) 910, 1363, 1558, 1788, 1953
PspPI GGNCC 4 cut(s) 1362, 2139, 2729, 3068
PspPPI RGGWCCY 1 cut(s) 1362
PstI CTGCAG 1 cut(s) 1026
PstNI CAGNNNCTG 1 cut(s) 2492
PsyI GACNNNGTC 1 cut(s) 752
PvuII CAGCTG 1 cut(s) 800
RsaI GTAC 4 cut(s) 100, 918, 1959, 3018
RsaNI GTAC 4 cut(s) 99, 917, 1958, 3017
RseI CAYNNNNRTG 4 cut(s) 521, 2507, 2534, 3042
SacI GAGCTC 1 cut(s) 1908
SapI GCTCTTC 2 cut(s) 216, 1698
SatI GCNGC 6 cut(s) 207, 228, 231, 1311, 1619, 1998
Sau96I GGNCC 4 cut(s) 1362, 2139, 2729, 3068
SchI GAGTC 4 cut(s) 851, 1852, 2729, 3035
ScrFI CCNGG 8 cut(s) 170, 335, 707, 1698, 1965, 2114, 2786, 2810
SduI GDGCHC 7 cut(s) 417, 1224, 1294, 1481, 1711, 1908, 2602
SfaNI GCATC 8 cut(s) 214, 311, 1153, 1312, 1350, 1739, 2248, 2490
SfcI CTRYAG 4 cut(s) 534, 561, 1022, 2094
SinI GGWCC 2 cut(s) 1362, 3068
SmiMI CAYNNNNRTG 4 cut(s) 521, 2507, 2534, 3042
SmlI CTYRAG 3 cut(s) 1249, 1640, 2209
SmoI CTYRAG 3 cut(s) 1249, 1640, 2209
Sse9I AATT 9 cut(s) 1191, 1583, 1657, 2052, 2108, 2154, 2217, 2688, 2695
SsiI CCGC 2 cut(s) 1790, 2616
SspMI CTAG 9 cut(s) 234, 1553, 1883, 2291, 2382, 2561, 2610, 2723, 2928
SstI GAGCTC 1 cut(s) 1908
StyD4I CCNGG 8 cut(s) 168, 333, 705, 1696, 1963, 2112, 2784, 2808
StyI CCWWGG 2 cut(s) 575, 1552
TaiI ACGT 4 cut(s) 1133, 1963, 2395, 2599
TaqI TCGA 7 cut(s) 5, 24, 129, 404, 682, 1581, 3024
TaqII GACCGA 1 cut(s) 2160
TasI AATT 9 cut(s) 1191, 1583, 1657, 2052, 2108, 2154, 2217, 2688, 2695
TatI WGTACW 1 cut(s) 916
TfiI GAWTC 5 cut(s) 40, 1769, 1781, 1944, 2004
TseFI GTSAC 9 cut(s) 709, 870, 943, 1243, 1283, 2020, 2236, 2878, 3032
TseI GCWGC 6 cut(s) 206, 227, 230, 1310, 1618, 1997
Tsp45I GTSAC 9 cut(s) 709, 870, 943, 1243, 1283, 2020, 2236, 2878, 3032
TspDTI ATGAA 9 cut(s) 203, 208, 309, 734, 761, 1283, 1902, 2595, 2606
TspGWI ACGGA 6 cut(s) 33, 67, 101, 1791, 1819, 2003
Tth111I GACNNNGTC 1 cut(s) 752
Van91I CCANNNNNTGG 1 cut(s) 803
Vha464I CTTAAG 1 cut(s) 1249
VneI GTGCAC 2 cut(s) 1707, 2598
VpaK11BI GGWCC 2 cut(s) 1362, 3068
XagI CCTNNNNNAGG 1 cut(s) 1914
XapI RAATTY 4 cut(s) 1583, 2108, 2154, 2688
XbaI TCTAGA 1 cut(s) 1882
XceI RCATGY 2 cut(s) 878, 1317
XcmI CCANNNNNNNNNTGG 1 cut(s) 748
XmaJI CCTAGG 1 cut(s) 1552
XmiI GTMKAC 1 cut(s) 613
XmnI GAANNNNTTC 5 cut(s) 396, 570, 1470, 1785, 1980
XspI CTAG 9 cut(s) 234, 1553, 1883, 2291, 2382, 2561, 2610, 2723, 2928
Zsp2I ATGCAT 1 cut(s) 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.