Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013306

Physical Location & Seq

Genomic Coordinates Reverse (-)

17470865 .. 17472984

Gene Structure 2120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCTGACTCTTTACCATCAAGAAAGGTCACCGGACGCCACAAGTAATGATCGCGATGAGACGCCAGAGACTGTGGTTAGAGAAGTCCACGCGCTAACTCCAGCGCCGGAGGATAATTCCCGGACGATGACGGCGACGCTACCTCCACCGCCTGCTTTCCGAGGCTATTTTTCTCCTCCAAGGTCAGCGACGACGATGAGCGAAGGAGAGAACTTCACAACTATAAGCAGAGAGTTCAACGCTCTAGTCATCGCCGGATCCTCCATGGAGAACAACGAACTAATGACTCGTGACGTCACGCAGCGTGAAGATGAGAGACAAGACGAGTTGATGAGAATCCACGAGGACACGGATCATGAAGAGGAAACGAATCCTTTAGCAATCGTGCCGGATCAGTATCCTGGTTCGGGTTTGGATCCTGGAAGTGATAATGGGCCGGGTCAGAGTCGGGTTGGGTCGACGGTGCAAAGAGTTAAGAGGGAAGAGGTGGAAGCGAAGATAACGGCGTGGCAGACGGCAAAACTGGCTAAGATTAATAACAGGTTTAAGAGGGAAGACGCCGTTATTAACGGTTGGTTTAATGAACAAGTTAACAAGGCCAACTCTTGGATGAAGAAAATTGAGAGGAAGCTAGAGGAGAGAAAAGCAAAAGCGATGGAGAAAACGCAAAACAATGTGGCGAAAGCGCAGAGGAAAGCGGAGGAGAGAAGAGCGACGGCAGAGGCAAAGAGAGGGACAGAGGTTGCAAAAGTAGTTGAAGTTGCTAATCTCATGAGAGCCCTTGGACGTCCTCCTGCCAAACGCTCCTTCTTCTCTTTCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0016020 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0033993 GO:0042221 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0097305 GO:0097306 GO:1900457 GO:1900458 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

274

Amino Acids

30.94

Weight (kDa)

6.2

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_C	PF03763	161 - 266	1e-30	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41870 AT3G57540
fragaria_vesca	FvH4_6g23510
malus_domestica	MD12G1072300.v1.1 MD14G1069500.v1.1
prunus_persica	Prupe.7G064800_v2.0.a1
pyrus_communis	pycom12g06070 pycom14g05760
rosa_chinensis	RchiOBHm_Chr3g0481501
rosa_laevigata	RLG00000023391
rosa_multiflora	Rmu_sc0010846.1_g000007
rosa_roxburghii	Rroxscaffold_6G00400380
rosa_rugosa	Rorug03G0192300
rosa_samantha	Rh3AG243500 Rh3BG278400 Rh3CG273600 Rh3DG270400
rosa_wichuraiana	Rw3G021750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	297, 790
AccB7I	CCANNNNNTGG	1 cut(s)	606
AccI	GTMKAC	1 cut(s)	458
AccII	CGCG	2 cut(s)	54, 92
AciI	CCGC	2 cut(s)	149, 698
AclWI	GGATC	6 cut(s)	252, 265, 360, 399, 410, 423
AcyI	GRCGYC	5 cut(s)	36, 62, 294, 558, 787
AfiI	CCNNNNNNNGG	2 cut(s)	407, 606
AgsI	TTSAA	2 cut(s)	238, 758
AjnI	CCWGG	2 cut(s)	400, 418
AjuI	GAANNNNNNNTTGG	2 cut(s)	791, 823
AluBI	AGCT	1 cut(s)	631
AluI	AGCT	1 cut(s)	631
Alw26I	GTCTC	3 cut(s)	53, 62, 310
AlwI	GGATC	6 cut(s)	252, 265, 360, 399, 410, 423
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	2 cut(s)	434, 597
ApeKI	GCWGC	1 cut(s)	301
AseI	ATTAAT	1 cut(s)	534
AspLEI	GCGC	3 cut(s)	94, 106, 688
AspS9I	GGNCC	1 cut(s)	434
AsuC2I	CCSGG	2 cut(s)	121, 438
AsuHPI	GGTGA	1 cut(s)	21
BamHI	GGATCC	2 cut(s)	257, 415
BanII	GRGCYC	1 cut(s)	781
BauI	CACGAG	2 cut(s)	288, 341
BbsI	GAAGAC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	2 cut(s)	24, 649
BceAI	ACGGC	5 cut(s)	147, 519, 531, 545, 732
BciT130I	CCWGG	2 cut(s)	402, 420
BciVI	GTATCC	1 cut(s)	408
BcnI	CCSGG	2 cut(s)	121, 438
BcoDI	GTCTC	3 cut(s)	53, 62, 310
BfaI	CTAG	2 cut(s)	245, 632
BfoI	RGCGCY	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
Bme1390I	CCNGG	4 cut(s)	121, 402, 420, 438
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	2 cut(s)	259, 417
BmrFI	CCNGG	4 cut(s)	121, 402, 420, 438
BpiI	GAAGAC	1 cut(s)	561
BpmI	CTGGAG	1 cut(s)	84
BpuMI	CCSGG	2 cut(s)	121, 438
BsaBI	GATNNNNATC	2 cut(s)	335, 396
BsaHI	GRCGYC	5 cut(s)	36, 62, 294, 558, 787
BsaJI	CCNNGG	4 cut(s)	160, 179, 264, 781
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 606
Bse1I	ACTGG	1 cut(s)	528
Bse8I	GATNNNNATC	2 cut(s)	335, 396
BseBI	CCWGG	2 cut(s)	402, 420
BseDI	CCNNGG	4 cut(s)	160, 179, 264, 781
BseGI	GGATG	1 cut(s)	615
BseJI	GATNNNNATC	2 cut(s)	335, 396
BseLI	CCNNNNNNNGG	2 cut(s)	407, 606
BseNI	ACTGG	1 cut(s)	528
BseRI	GAGGAG	3 cut(s)	165, 650, 716
BseXI	GCAGC	1 cut(s)	313
Bsh1236I	CGCG	2 cut(s)	54, 92
BshFI	GGCC	2 cut(s)	436, 599
BsiSI	CCGG	6 cut(s)	32, 107, 121, 255, 389, 437
BslFI	GGGAC	1 cut(s)	748
BslI	CCNNNNNNNGG	2 cut(s)	407, 606
BsmAI	GTCTC	3 cut(s)	53, 62, 310
BsmBI	CGTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	748
BsnI	GGCC	2 cut(s)	436, 599
Bsp1286I	GDGCHC	1 cut(s)	781
Bsp143I	GATC	5 cut(s)	49, 257, 352, 391, 415
Bsp19I	CCATGG	1 cut(s)	264
Bsp68I	TCGCGA	1 cut(s)	54
BspACI	CCGC	2 cut(s)	149, 698
BspANI	GGCC	2 cut(s)	436, 599
BspFNI	CGCG	2 cut(s)	54, 92
BspHI	TCATGA	2 cut(s)	355, 771
BspLI	GGNNCC	2 cut(s)	259, 417
BspPI	GGATC	6 cut(s)	252, 265, 360, 399, 410, 423
BspQI	GCTCTTC	1 cut(s)	703
BsrI	ACTGG	1 cut(s)	528
BssECI	CCNNGG	4 cut(s)	160, 179, 264, 781
BssMI	GATC	5 cut(s)	49, 257, 352, 391, 415
BssNI	GRCGYC	5 cut(s)	36, 62, 294, 558, 787
BssSI	CACGAG	2 cut(s)	288, 341
BssT1I	CCWWGG	3 cut(s)	179, 264, 781
Bst2BI	CACGAG	2 cut(s)	288, 341
Bst2UI	CCWGG	2 cut(s)	402, 420
Bst4CI	ACNGT	3 cut(s)	73, 463, 572
Bst6I	CTCTTC	3 cut(s)	354, 477, 703
BstACI	GRCGYC	5 cut(s)	36, 62, 294, 558, 787
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	528
BstDSI	CCRYGG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	615
BstFNI	CGCG	2 cut(s)	54, 92
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	3 cut(s)	94, 106, 688
BstKTI	GATC	5 cut(s)	52, 260, 355, 394, 418
BstMAI	GTCTC	3 cut(s)	53, 62, 310
BstMBI	GATC	5 cut(s)	49, 257, 352, 391, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	524
BstNI	CCWGG	2 cut(s)	402, 420
BstPI	GGTNACC	1 cut(s)	27
BstSCI	CCNGG	4 cut(s)	119, 400, 418, 436
BstUI	CGCG	2 cut(s)	54, 92
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	2 cut(s)	257, 415
BstYI	RGATCY	2 cut(s)	257, 415
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	2 cut(s)	436, 599
BtgI	CCRYGG	1 cut(s)	264
BtgZI	GCGATG	3 cut(s)	69, 235, 668
BtsCI	GGATG	1 cut(s)	615
BtuMI	TCGCGA	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	71
CciI	TCATGA	2 cut(s)	355, 771
CfoI	GCGC	3 cut(s)	94, 106, 688
Cfr13I	GGNCC	1 cut(s)	434
CseI	GACGC	4 cut(s)	44, 70, 145, 566
CviAII	CATG	3 cut(s)	265, 356, 772
CviJI	RGCY	6 cut(s)	165, 436, 527, 599, 631, 779
CviKI_1	RGCY	6 cut(s)	165, 436, 527, 599, 631, 779
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	5 cut(s)	51, 259, 354, 393, 417
DpnII	GATC	5 cut(s)	49, 257, 352, 391, 415
Eam1104I	CTCTTC	3 cut(s)	354, 477, 703
EarI	CTCTTC	3 cut(s)	354, 477, 703
Eco130I	CCWWGG	3 cut(s)	179, 264, 781
Eco24I	GRGCYC	1 cut(s)	781
Eco91I	GGTNACC	1 cut(s)	27
EcoO65I	GGTNACC	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	400, 418
EcoT14I	CCWWGG	3 cut(s)	179, 264, 781
EcoT38I	GRGCYC	1 cut(s)	781
ErhI	CCWWGG	3 cut(s)	179, 264, 781
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	3 cut(s)	268, 359, 775
FaiI	YATR	4 cut(s)	224, 266, 357, 773
FaqI	GGGAC	1 cut(s)	748
FatI	CATG	3 cut(s)	264, 355, 771
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	1 cut(s)	302
FokI	GGATG	1 cut(s)	622
FriOI	GRGCYC	1 cut(s)	781
Fsp4HI	GCNGC	1 cut(s)	302
FspBI	CTAG	2 cut(s)	245, 632
GlaI	GCGC	3 cut(s)	93, 105, 687
GluI	GCNGC	1 cut(s)	302
GsuI	CTGGAG	1 cut(s)	84
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	436, 599
HapII	CCGG	6 cut(s)	32, 107, 121, 255, 389, 437
HgaI	GACGC	4 cut(s)	44, 70, 145, 566
HhaI	GCGC	3 cut(s)	94, 106, 688
Hin1I	GRCGYC	5 cut(s)	36, 62, 294, 558, 787
Hin1II	CATG	3 cut(s)	268, 359, 775
Hin6I	GCGC	3 cut(s)	92, 104, 686
HinP1I	GCGC	3 cut(s)	92, 104, 686
HincII	GTYRAC	2 cut(s)	459, 592
HindII	GTYRAC	2 cut(s)	459, 592
HinfI	GANTC	5 cut(s)	7, 286, 336, 370, 445
HpaI	GTTAAC	1 cut(s)	592
HpaII	CCGG	6 cut(s)	32, 107, 121, 255, 389, 437
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	3 cut(s)	88, 459, 592
Hpy188I	TCNGA	2 cut(s)	161, 444
Hpy188III	TCNNGA	5 cut(s)	20, 53, 290, 356, 772
Hpy8I	GTNNAC	3 cut(s)	88, 459, 592
Hpy99I	CGWCG	5 cut(s)	139, 193, 196, 463, 718
HpyAV	CCTTC	2 cut(s)	197, 817
HpyCH4III	ACNGT	3 cut(s)	73, 463, 572
HpyCH4IV	ACGT	2 cut(s)	294, 787
HpyCH4V	TGCA	2 cut(s)	466, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	524
HpyF3I	CTNAG	1 cut(s)	528
HpySE526I	ACGT	2 cut(s)	294, 787
Hsp92I	GRCGYC	5 cut(s)	36, 62, 294, 558, 787
Hsp92II	CATG	3 cut(s)	268, 359, 775
HspAI	GCGC	3 cut(s)	92, 104, 686
KspAI	GTTAAC	1 cut(s)	592
Kzo9I	GATC	5 cut(s)	49, 257, 352, 391, 415
LguI	GCTCTTC	1 cut(s)	703
LmnI	GCTCC	1 cut(s)	809
Lsp1109I	GCAGC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	245, 632
MaeII	ACGT	2 cut(s)	294, 787
MaeIII	GTNAC	3 cut(s)	27, 290, 295
MalI	GATC	5 cut(s)	51, 259, 354, 393, 417
MboI	GATC	5 cut(s)	49, 257, 352, 391, 415
MboII	GAAGA	8 cut(s)	320, 371, 494, 508, 566, 625, 720, 802
MflI	RGATCY	2 cut(s)	257, 415
MhlI	GDGCHC	1 cut(s)	781
MluCI	AATT	2 cut(s)	115, 618
MlyI	GAGTC	2 cut(s)	280, 454
MseI	TTAA	6 cut(s)	474, 534, 546, 567, 579, 591
MspI	CCGG	6 cut(s)	32, 107, 121, 255, 389, 437
MspR9I	CCNGG	4 cut(s)	121, 402, 420, 438
MvaI	CCWGG	2 cut(s)	402, 420
MvnI	CGCG	2 cut(s)	54, 92
MwoI	GCNNNNNNNGC	1 cut(s)	524
NciI	CCSGG	2 cut(s)	121, 438
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	5 cut(s)	49, 257, 352, 391, 415
NlaIII	CATG	3 cut(s)	268, 359, 775
NlaIV	GGNNCC	2 cut(s)	259, 417
NmuCI	GTSAC	3 cut(s)	27, 290, 295
NruI	TCGCGA	1 cut(s)	54
PagI	TCATGA	2 cut(s)	355, 771
PciSI	GCTCTTC	1 cut(s)	703
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	336, 370
PflMI	CCANNNNNTGG	1 cut(s)	606
PfoI	TCCNGGA	2 cut(s)	119, 418
PkrI	GCNGC	1 cut(s)	303
PleI	GAGTC	2 cut(s)	280, 453
PpsI	GAGTC	2 cut(s)	280, 453
PshBI	ATTAAT	1 cut(s)	534
Psp6I	CCWGG	2 cut(s)	400, 418
PspEI	GGTNACC	1 cut(s)	27
PspGI	CCWGG	2 cut(s)	400, 418
PspN4I	GGNNCC	2 cut(s)	259, 417
PspPI	GGNCC	1 cut(s)	434
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	257, 415
RruI	TCGCGA	1 cut(s)	54
SalI	GTCGAC	1 cut(s)	457
SapI	GCTCTTC	1 cut(s)	703
SaqAI	TTAA	6 cut(s)	474, 534, 546, 567, 579, 591
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	5 cut(s)	49, 257, 352, 391, 415
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	2 cut(s)	280, 454
ScrFI	CCNGG	4 cut(s)	121, 402, 420, 438
SduI	GDGCHC	1 cut(s)	781
SetI	ASST	9 cut(s)	29, 145, 185, 297, 489, 545, 633, 744, 790
Sse9I	AATT	2 cut(s)	115, 618
SsiI	CCGC	2 cut(s)	149, 698
SspMI	CTAG	2 cut(s)	245, 632
StyD4I	CCNGG	4 cut(s)	119, 400, 418, 436
StyI	CCWWGG	3 cut(s)	179, 264, 781
TaaI	ACNGT	3 cut(s)	73, 463, 572
TaiI	ACGT	2 cut(s)	297, 790
TaqI	TCGA	1 cut(s)	458
TasI	AATT	2 cut(s)	115, 618
TfiI	GAWTC	2 cut(s)	336, 370
Tru1I	TTAA	6 cut(s)	474, 534, 546, 567, 579, 591
Tru9I	TTAA	6 cut(s)	474, 534, 546, 567, 579, 591
TseFI	GTSAC	3 cut(s)	27, 290, 295
TseI	GCWGC	1 cut(s)	301
Tsp45I	GTSAC	3 cut(s)	27, 290, 295
TspDTI	ATGAA	3 cut(s)	372, 597, 626
TspGWI	ACGGA	1 cut(s)	365
Van91I	CCANNNNNTGG	1 cut(s)	606
VspI	ATTAAT	1 cut(s)	534
XmiI	GTMKAC	1 cut(s)	458
XspI	CTAG	2 cut(s)	245, 632
ZraI	GACGTC	2 cut(s)	295, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.