Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0013306

Physical Location & Seq

Genomic Coordinates Forward (+)

7647250 .. 7649669

Gene Structure 2420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1069500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAATGATCAAGGGGCTGGCACCAGGCAAGGAGTACAAGATCATCATGATGATCATGGTGAAGATGAGCAGAACATCAGGGACATCCATGCCTTGACACCGCCTCGCCTGCCGCCTCCCGCCAATGGCGGCGGCCGCAGAAGAGAAGCTTGGGAAACCAGTAGCCAAACATCTTTGTCCATGGCCAGTGCTGAATTAGGAACAGCTTCAAGTGAGAACTTCACCACCATGAGTAGAGAGTTCAGTGCTTTAGTAGTTGCTGGGTCGGCAATCGGGACAAATAATAGCACCACAAATGATAGTGACTATAATACTATGATTAATCAAGGGAACAATAATTTGGGTAGGATCGGAGAGGAGGACAATAATATGCATGAGCAGGAGCTGGAGAGCAACCATTTGGCTATAGTCCCGGATAATTACAACCATTTGGACCCAATTACCTACTCTCCAAGGAATAGTCAGGCTAATAACCATATTGGGTCTTCATCAAGCACGGTTAGGACTCGGGATCACCAAGAAGGCGGCGGCGGCGATCAGATGGTTTCGGTGGATCGGGTGAAGAAGGAAGAGGTTGAAACAAAGATATCGGCTTGGCAAAACAACAAGATTGCCAAGCTTAATAACAGGTTTAAGAGGGAGGATGCTATTATTAATGGGTGGGAAAGTGAGCAGGTTCAGAAAGCTTCTTTATGGATGAAGAAAGTTGAGAGGAAGTTGGAGGAGAAAAGAGCAAGAGCCCTAGAGAAGATGCAAAACGACATAGCCAAAGCACATAGGAAAGCAGAGGAGAGGAAGGCATCGGCAGAGGCTAAAAGGGGAACGAAGGTGGCTAGGGTTCTTGAAATTGCCAATCTAATGAGAGCTGTCGGAAGAGCACCTGCCAAAAAGTCCTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0016020 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0033993 GO:0042221 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0097305 GO:0097306 GO:1900457 GO:1900458 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

301

Amino Acids

33.37

Weight (kDa)

6.82

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_C	PF03763	190 - 296	1.4e-30	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41870 AT3G57540
fragaria_vesca	FvH4_6g23510
malus_domestica	MD12G1072300.v1.1 MD14G1069500.v1.1
prunus_persica	Prupe.7G064800_v2.0.a1
pyrus_communis	pycom12g06070 pycom14g05760
rosa_chinensis	RchiOBHm_Chr3g0481501
rosa_laevigata	RLG00000023391
rosa_multiflora	Rmu_sc0010846.1_g000007
rosa_roxburghii	Rroxscaffold_6G00400380
rosa_rugosa	Rorug03G0192300
rosa_samantha	Rh3AG243500 Rh3BG278400 Rh3CG273600 Rh3DG270400
rosa_wichuraiana	Rw3G021750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	889
Acc36I	ACCTGC	2 cut(s)	664, 889
AccB1I	GGYRCC	1 cut(s)	20
AciI	CCGC	9 cut(s)	101, 113, 120, 129, 132, 136, 525, 528, 531
AclWI	GGATC	3 cut(s)	356, 519, 561
AcoI	YGGCCR	2 cut(s)	133, 183
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	210, 578, 845
AjnI	CCWGG	1 cut(s)	23
AjuI	GAANNNNNNNTTGG	5 cut(s)	133, 165, 323, 355, 878
AluBI	AGCT	6 cut(s)	149, 206, 385, 619, 686, 866
AluI	AGCT	6 cut(s)	149, 206, 385, 619, 686, 866
Alw21I	GWGCWC	1 cut(s)	880
AlwI	GGATC	3 cut(s)	356, 519, 561
AlwNI	CAGNNNCTG	1 cut(s)	385
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	2 cut(s)	133, 183
AseI	ATTAAT	2 cut(s)	321, 654
Asp700I	GAANNNNTTC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	433
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	4 cut(s)	71, 214, 506, 571
AvaI	CYCGRG	1 cut(s)	507
AvaII	GGWCC	1 cut(s)	433
BalI	TGGCCA	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	742
BbsI	GAAGAC	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	880
BccI	CCATC	1 cut(s)	535
BciT130I	CCWGG	1 cut(s)	25
BclI	TGATCA	2 cut(s)	7, 52
BcnI	CCSGG	1 cut(s)	413
BfaI	CTAG	2 cut(s)	743, 834
BfmI	CTRYAG	1 cut(s)	405
BfuAI	ACCTGC	2 cut(s)	664, 889
BisI	GCNGC	7 cut(s)	113, 130, 133, 136, 526, 529, 532
BlsI	GCNGC	7 cut(s)	114, 131, 134, 137, 527, 530, 533
Bme1390I	CCNGG	2 cut(s)	25, 413
Bme18I	GGWCC	1 cut(s)	433
BmeT110I	CYCGRG	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	2 cut(s)	22, 435
BmrFI	CCNGG	2 cut(s)	25, 413
BmsI	GCATC	3 cut(s)	634, 741, 809
BpiI	GAAGAC	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	407
BpuMI	CCSGG	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	180, 452
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	159, 186
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	2 cut(s)	180, 452
BseGI	GGATG	3 cut(s)	84, 649, 702
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseNI	ACTGG	2 cut(s)	159, 186
BseRI	GAGGAG	3 cut(s)	371, 737, 803
BseX3I	CGGCCG	1 cut(s)	133
BseYI	CCCAGC	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	2 cut(s)	135, 185
BshNI	GGYRCC	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	880
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	3 cut(s)	95, 289, 395
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmFI	GGGAC	3 cut(s)	95, 289, 395
BsnI	GGCC	2 cut(s)	135, 185
BsoBI	CYCGRG	1 cut(s)	507
Bsp1286I	GDGCHC	2 cut(s)	742, 880
Bsp143I	GATC	7 cut(s)	7, 40, 52, 348, 511, 535, 553
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	9 cut(s)	101, 113, 120, 129, 132, 136, 525, 528, 531
BspANI	GGCC	2 cut(s)	135, 185
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	22, 435
BspMI	ACCTGC	2 cut(s)	664, 889
BspPI	GGATC	3 cut(s)	356, 519, 561
BspQI	GCTCTTC	1 cut(s)	868
BspT107I	GGYRCC	1 cut(s)	20
BsrI	ACTGG	2 cut(s)	159, 186
BssECI	CCNNGG	2 cut(s)	180, 452
BssMI	GATC	7 cut(s)	7, 40, 52, 348, 511, 535, 553
BssT1I	CCWWGG	2 cut(s)	180, 452
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	3 cut(s)	136, 564, 868
BstC8I	GCNNGC	2 cut(s)	19, 110
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	3 cut(s)	84, 649, 702
BstKTI	GATC	7 cut(s)	10, 43, 55, 351, 514, 538, 556
BstMBI	GATC	7 cut(s)	7, 40, 52, 348, 511, 535, 553
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 135, 266, 531
BstNI	CCWGG	1 cut(s)	25
BstSCI	CCNGG	2 cut(s)	23, 411
BstSFI	CTRYAG	1 cut(s)	405
BstV2I	GAAGAC	1 cut(s)	477
BstZI	CGGCCG	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	135, 185
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	84, 649, 702
BtsIMutI	CAGTG	2 cut(s)	193, 250
BveI	ACCTGC	2 cut(s)	664, 889
Cac8I	GCNNGC	2 cut(s)	19, 110
CaiI	CAGNNNCTG	1 cut(s)	385
CciI	TCATGA	1 cut(s)	46
CciNI	GCGGCCGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	35
CviAII	CATG	6 cut(s)	47, 56, 89, 181, 229, 374
CviQI	GTAC	1 cut(s)	35
DpnI	GATC	7 cut(s)	9, 42, 54, 350, 513, 537, 555
DpnII	GATC	7 cut(s)	7, 40, 52, 348, 511, 535, 553
EaeI	YGGCCR	2 cut(s)	133, 183
EagI	CGGCCG	1 cut(s)	133
Eam1104I	CTCTTC	3 cut(s)	136, 564, 868
EarI	CTCTTC	3 cut(s)	136, 564, 868
EclXI	CGGCCG	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	180, 452
Eco24I	GRGCYC	1 cut(s)	742
Eco32I	GATATC	1 cut(s)	588
Eco47I	GGWCC	1 cut(s)	433
Eco52I	CGGCCG	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	507
EcoRII	CCWGG	1 cut(s)	23
EcoRV	GATATC	1 cut(s)	588
EcoT14I	CCWWGG	2 cut(s)	180, 452
EcoT22I	ATGCAT	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	742
ErhI	CCWWGG	2 cut(s)	180, 452
FaeI	CATG	6 cut(s)	50, 59, 92, 184, 232, 377
FalI	AAGNNNNNCTT	3 cut(s)	133, 165, 881
FaqI	GGGAC	3 cut(s)	95, 289, 395
FatI	CATG	6 cut(s)	46, 55, 88, 180, 228, 373
FauI	CCCGC	1 cut(s)	127
FbaI	TGATCA	2 cut(s)	7, 52
Fnu4HI	GCNGC	7 cut(s)	113, 130, 133, 136, 526, 529, 532
FokI	GGATG	3 cut(s)	71, 656, 709
FriOI	GRGCYC	1 cut(s)	742
Fsp4HI	GCNGC	7 cut(s)	113, 130, 133, 136, 526, 529, 532
FspBI	CTAG	2 cut(s)	743, 834
GluI	GCNGC	7 cut(s)	113, 130, 133, 136, 526, 529, 532
GsaI	CCCAGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	135, 185
HapII	CCGG	1 cut(s)	413
Hin1II	CATG	6 cut(s)	50, 59, 92, 184, 232, 377
HindIII	AAGCTT	3 cut(s)	147, 617, 684
HinfI	GANTC	1 cut(s)	505
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	4 cut(s)	71, 214, 506, 571
Hpy188I	TCNGA	4 cut(s)	353, 540, 681, 872
Hpy188III	TCNNGA	4 cut(s)	47, 274, 509, 842
HpyAV	CCTTC	4 cut(s)	515, 559, 790, 820
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4V	TGCA	2 cut(s)	373, 754
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 135, 266, 531
Hsp92II	CATG	6 cut(s)	50, 59, 92, 184, 232, 377
Ksp22I	TGATCA	2 cut(s)	7, 52
Kzo9I	GATC	7 cut(s)	7, 40, 52, 348, 511, 535, 553
LguI	GCTCTTC	1 cut(s)	868
LmnI	GCTCC	1 cut(s)	382
LweI	GCATC	3 cut(s)	634, 741, 809
MaeI	CTAG	2 cut(s)	743, 834
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	7 cut(s)	9, 42, 54, 350, 513, 537, 555
MboI	GATC	7 cut(s)	7, 40, 52, 348, 511, 535, 553
MboII	GAAGA	8 cut(s)	74, 153, 477, 574, 581, 712, 760, 885
MhlI	GDGCHC	2 cut(s)	742, 880
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	5 cut(s)	194, 337, 418, 438, 846
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	499
MmeI	TCCRAC	2 cut(s)	699, 850
Mox20I	TGGCCA	1 cut(s)	185
Mph1103I	ATGCAT	1 cut(s)	375
MroXI	GAANNNNTTC	1 cut(s)	205
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	4 cut(s)	321, 621, 633, 654
MslI	CAYNNNNRTG	2 cut(s)	48, 227
Msp20I	TGGCCA	1 cut(s)	185
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	2 cut(s)	25, 413
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	4 cut(s)	109, 135, 266, 531
NciI	CCSGG	1 cut(s)	413
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	7 cut(s)	7, 40, 52, 348, 511, 535, 553
NlaIII	CATG	6 cut(s)	50, 59, 92, 184, 232, 377
NlaIV	GGNNCC	2 cut(s)	22, 435
NmuCI	GTSAC	1 cut(s)	302
NotI	GCGGCCGC	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	375
PagI	TCATGA	1 cut(s)	46
PaqCI	CACCTGC	1 cut(s)	889
PciSI	GCTCTTC	1 cut(s)	868
PdmI	GAANNNNTTC	1 cut(s)	205
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	7 cut(s)	114, 131, 134, 137, 527, 530, 533
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
PshBI	ATTAAT	2 cut(s)	321, 654
Psp6I	CCWGG	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	22, 435
PspPI	GGNCC	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	385
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
RseI	CAYNNNNRTG	2 cut(s)	48, 227
SapI	GCTCTTC	1 cut(s)	868
SaqAI	TTAA	4 cut(s)	321, 621, 633, 654
SatI	GCNGC	7 cut(s)	113, 130, 133, 136, 526, 529, 532
Sau3AI	GATC	7 cut(s)	7, 40, 52, 348, 511, 535, 553
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	2 cut(s)	25, 413
SduI	GDGCHC	2 cut(s)	742, 880
SfaNI	GCATC	3 cut(s)	634, 741, 809
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	2 cut(s)	48, 227
Sse9I	AATT	5 cut(s)	194, 337, 418, 438, 846
SsiI	CCGC	9 cut(s)	101, 113, 120, 129, 132, 136, 525, 528, 531
SspMI	CTAG	2 cut(s)	743, 834
StyD4I	CCNGG	2 cut(s)	23, 411
StyI	CCWWGG	2 cut(s)	180, 452
TaaI	ACNGT	1 cut(s)	499
TasI	AATT	5 cut(s)	194, 337, 418, 438, 846
TatI	WGTACW	1 cut(s)	34
TauI	GCSGC	7 cut(s)	115, 132, 135, 138, 528, 531, 534
Tru1I	TTAA	4 cut(s)	321, 621, 633, 654
Tru9I	TTAA	4 cut(s)	321, 621, 633, 654
TscAI	CASTG	2 cut(s)	193, 250
TseFI	GTSAC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	3 cut(s)	17, 477, 713
TspRI	CASTG	2 cut(s)	193, 250
VpaK11BI	GGWCC	1 cut(s)	433
VspI	ATTAAT	2 cut(s)	321, 654
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	2 cut(s)	743, 834
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.