Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0013306

Physical Location & Seq

Genomic Coordinates Forward (+)

6147032 .. 6148720

Gene Structure 1689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAATGATCAAGGGGCTGGGACTAGCCAAGCAGCACAAGATCATGATGATCATGGTGAAGATCAAGAGCAGATCATCAGGGACATCCATGCCTTGACACCGCCTCGTCCACCGCCTCCCGGCAACCACGGCCGTAGAAGAGAAGCTTGGGAAACTGGTAGCCATAGATCATCATCTTTGTCCATGGCCAGCACTGAGTTAGGAACAGCTTCAACTGAGAACTTCACTACCATGAGTAGAGAATTCAGTGCTCTTGTGGTTGCAGGGTCAGCAATCGGGACTAATAATAGTACCACCAATGATAGTGACCACGGTACTAATGACAATAATTTGGGAAGGATTGGAGAGGAGGAGGATAACAATATGCCTGAGGAGGAGCTGGAGACCAATCCTTTGGCTATAGTCCCGGATAATTACAACCCTGTGGACCCAGTTCCTTATTCTCCAAGGAATAGTGAGGCTAATAATCATAGAATTGGCTCTTCGTCAAGCATGGTTAGGACTCGGGATTACCAAGGCGGCAGCGGCGGCGATCAGACGGTGTCGGTGCATCGGGTGAAGAAGGAAGAGGTTGAAACAAAGATATCGGCTTGGCAAAACAACAAGATTGCCAAGCTTAATAACAGGTTTAAGAGGGAGGATGCTATTATTAATGGGTGGGAAAGTGAGCAGGTACAGAAAGCTTCTTCATGGATGAAGAAAGTAGAGAGAAAGTTGGAGGAGAAAAGAGCAAGAGCCCTAGAGAAGATGCAAAATGATATAGCCAAAGCACGTAGGAAAGCAGAGGAGAGGAAGGCATCGGCTGAGGCTAAAAGGGGAACAAAAGTGGCTAGGGTTCTTGAAGTTGCCAATCTAATGAGAGCTGTTGGAAGAGCACCTGCCAAAAAATCCTTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0016020 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0033993 GO:0042221 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0097305 GO:0097306 GO:1900457 GO:1900458 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

300

Amino Acids

33.14

Weight (kDa)

6.74

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41870 AT3G57540
fragaria_vesca	FvH4_6g23510
malus_domestica	MD12G1072300.v1.1 MD14G1069500.v1.1
prunus_persica	Prupe.7G064800_v2.0.a1
pyrus_communis	pycom12g06070 pycom14g05760
rosa_chinensis	RchiOBHm_Chr3g0481501
rosa_laevigata	RLG00000023391
rosa_multiflora	Rmu_sc0010846.1_g000007
rosa_roxburghii	Rroxscaffold_6G00400380
rosa_rugosa	Rorug03G0192300
rosa_samantha	Rh3AG243500 Rh3BG278400 Rh3CG273600 Rh3DG270400
rosa_wichuraiana	Rw3G021750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	886
Acc36I	ACCTGC	2 cut(s)	661, 886
AciI	CCGC	5 cut(s)	101, 113, 519, 525, 528
AcoI	YGGCCR	2 cut(s)	130, 186
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	3 cut(s)	292, 316, 675
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	3 cut(s)	213, 575, 842
AjuI	GAANNNNNNNTTGG	3 cut(s)	130, 162, 875
AluBI	AGCT	6 cut(s)	146, 209, 379, 616, 683, 863
AluI	AGCT	6 cut(s)	146, 209, 379, 616, 683, 863
Alw21I	GWGCWC	2 cut(s)	253, 877
Alw26I	GTCTC	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	504
AoxI	GGCC	2 cut(s)	130, 186
ApeKI	GCWGC	2 cut(s)	32, 522
ApoI	RAATTY	1 cut(s)	242
ArsI	GACNNNNNNTTYG	2 cut(s)	376, 408
AseI	ATTAAT	1 cut(s)	651
Asp700I	GAANNNNTTC	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	427
AsuC2I	CCSGG	2 cut(s)	120, 407
AsuHPI	GGTGA	2 cut(s)	68, 568
AvaI	CYCGRG	1 cut(s)	504
AvaII	GGWCC	1 cut(s)	427
AxyI	CCTNAGG	1 cut(s)	369
BalI	TGGCCA	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	739
Bbv12I	GWGCWC	2 cut(s)	253, 877
BbvCI	CCTCAGC	1 cut(s)	804
BbvI	GCAGC	2 cut(s)	44, 534
BceAI	ACGGC	2 cut(s)	117, 145
BclI	TGATCA	2 cut(s)	7, 49
BcnI	CCSGG	2 cut(s)	120, 407
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	4 cut(s)	24, 740, 831, 898
BfmI	CTRYAG	1 cut(s)	399
BfuAI	ACCTGC	2 cut(s)	661, 886
BisI	GCNGC	5 cut(s)	33, 520, 523, 526, 529
BlsI	GCNGC	5 cut(s)	34, 521, 524, 527, 530
Bme1390I	CCNGG	2 cut(s)	120, 407
Bme18I	GGWCC	1 cut(s)	427
BmeT110I	CYCGRG	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	2 cut(s)	120, 407
BmrI	ACTGGG	1 cut(s)	425
BmsI	GCATC	4 cut(s)	559, 631, 738, 806
BmuI	ACTGGG	1 cut(s)	425
BpmI	CTGGAG	1 cut(s)	401
Bpu10I	CCTNAGC	1 cut(s)	804
BpuMI	CCSGG	2 cut(s)	120, 407
BsaAI	YACGTR	1 cut(s)	773
BsaBI	GATNNNNATC	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	5 cut(s)	127, 183, 310, 446, 514
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	160, 431
Bse21I	CCTNAGG	1 cut(s)	369
Bse8I	GATNNNNATC	1 cut(s)	172
BseDI	CCNNGG	5 cut(s)	127, 183, 310, 446, 514
BseGI	GGATG	3 cut(s)	84, 646, 699
BseJI	GATNNNNATC	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	4 cut(s)	186, 207, 360, 795
BseNI	ACTGG	2 cut(s)	160, 431
BseRI	GAGGAG	6 cut(s)	362, 365, 386, 389, 734, 800
BseX3I	CGGCCG	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	44, 534
BseYI	CCCAGC	1 cut(s)	17
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	2 cut(s)	132, 188
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	2 cut(s)	253, 877
BsiHKCI	CYCGRG	1 cut(s)	504
BsiSI	CCGG	2 cut(s)	120, 407
BslFI	GGGAC	4 cut(s)	34, 95, 292, 389
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	377
BsmFI	GGGAC	4 cut(s)	34, 95, 292, 389
BsnI	GGCC	2 cut(s)	132, 188
Bso31I	GGTCTC	1 cut(s)	377
BsoBI	CYCGRG	1 cut(s)	504
Bsp1286I	GDGCHC	3 cut(s)	253, 739, 877
Bsp143I	GATC	7 cut(s)	7, 40, 49, 61, 72, 167, 532
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	5 cut(s)	101, 113, 519, 525, 528
BspANI	GGCC	2 cut(s)	132, 188
BspCNI	CTCAG	4 cut(s)	187, 208, 361, 796
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	429
BspMI	ACCTGC	2 cut(s)	661, 886
BspQI	GCTCTTC	2 cut(s)	487, 865
BspTNI	GGTCTC	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	160, 431
BssECI	CCNNGG	5 cut(s)	127, 183, 310, 446, 514
BssMI	GATC	7 cut(s)	7, 40, 49, 61, 72, 167, 532
BssT1I	CCWWGG	3 cut(s)	183, 446, 514
Bst4CI	ACNGT	2 cut(s)	314, 541
Bst6I	CTCTTC	4 cut(s)	133, 487, 561, 865
BstBAI	YACGTR	1 cut(s)	773
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	4 cut(s)	195, 216, 369, 804
BstDSI	CCRYGG	3 cut(s)	127, 183, 310
BstF5I	GGATG	3 cut(s)	84, 646, 699
BstKTI	GATC	7 cut(s)	10, 43, 52, 64, 75, 170, 535
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	7 cut(s)	7, 40, 49, 61, 72, 167, 532
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 269, 525, 528
BstSCI	CCNGG	2 cut(s)	118, 405
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	44, 534
BstXI	CCANNNNNNTGG	1 cut(s)	394
BstZI	CGGCCG	1 cut(s)	130
Bsu36I	CCTNAGG	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	132, 188
BtgI	CCRYGG	3 cut(s)	127, 183, 310
BtsCI	GGATG	3 cut(s)	84, 646, 699
BtsIMutI	CAGTG	2 cut(s)	192, 253
BveI	ACCTGC	2 cut(s)	661, 886
Cac8I	GCNNGC	1 cut(s)	190
CciI	TCATGA	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	427
Csp6I	GTAC	3 cut(s)	291, 315, 674
CviAII	CATG	7 cut(s)	44, 53, 89, 184, 232, 493, 690
CviQI	GTAC	3 cut(s)	291, 315, 674
DdeI	CTNAG	4 cut(s)	195, 216, 369, 804
DpnI	GATC	7 cut(s)	9, 42, 51, 63, 74, 169, 534
DpnII	GATC	7 cut(s)	7, 40, 49, 61, 72, 167, 532
EaeI	YGGCCR	2 cut(s)	130, 186
EagI	CGGCCG	1 cut(s)	130
Eam1104I	CTCTTC	4 cut(s)	133, 487, 561, 865
EarI	CTCTTC	4 cut(s)	133, 487, 561, 865
EclXI	CGGCCG	1 cut(s)	130
Eco130I	CCWWGG	3 cut(s)	183, 446, 514
Eco24I	GRGCYC	1 cut(s)	739
Eco31I	GGTCTC	1 cut(s)	377
Eco32I	GATATC	1 cut(s)	585
Eco47I	GGWCC	1 cut(s)	427
Eco52I	CGGCCG	1 cut(s)	130
Eco81I	CCTNAGG	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	504
EcoRI	GAATTC	1 cut(s)	242
EcoRV	GATATC	1 cut(s)	585
EcoT14I	CCWWGG	3 cut(s)	183, 446, 514
EcoT38I	GRGCYC	1 cut(s)	739
ErhI	CCWWGG	3 cut(s)	183, 446, 514
FaeI	CATG	7 cut(s)	47, 56, 92, 187, 235, 496, 693
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FaqI	GGGAC	4 cut(s)	34, 95, 292, 389
FatI	CATG	7 cut(s)	43, 52, 88, 183, 231, 492, 689
FbaI	TGATCA	2 cut(s)	7, 49
Fnu4HI	GCNGC	5 cut(s)	33, 520, 523, 526, 529
FokI	GGATG	3 cut(s)	71, 653, 706
FriOI	GRGCYC	1 cut(s)	739
Fsp4HI	GCNGC	5 cut(s)	33, 520, 523, 526, 529
FspBI	CTAG	4 cut(s)	24, 740, 831, 898
GluI	GCNGC	5 cut(s)	33, 520, 523, 526, 529
GsaI	CCCAGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	2 cut(s)	132, 188
HapII	CCGG	2 cut(s)	120, 407
Hin1II	CATG	7 cut(s)	47, 56, 92, 187, 235, 496, 693
HindIII	AAGCTT	3 cut(s)	144, 614, 681
HinfI	GANTC	1 cut(s)	502
HpaII	CCGG	2 cut(s)	120, 407
HphI	GGTGA	2 cut(s)	68, 568
Hpy166II	GTNNAC	2 cut(s)	110, 427
Hpy188I	TCNGA	1 cut(s)	537
Hpy188III	TCNNGA	5 cut(s)	44, 65, 277, 506, 839
Hpy8I	GTNNAC	2 cut(s)	110, 427
HpyAV	CCTTC	3 cut(s)	330, 556, 787
HpyCH4III	ACNGT	2 cut(s)	314, 541
HpyCH4IV	ACGT	1 cut(s)	772
HpyCH4V	TGCA	3 cut(s)	263, 550, 751
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 269, 525, 528
HpyF3I	CTNAG	4 cut(s)	195, 216, 369, 804
HpySE526I	ACGT	1 cut(s)	772
Hsp92II	CATG	7 cut(s)	47, 56, 92, 187, 235, 496, 693
Ksp22I	TGATCA	2 cut(s)	7, 49
Kzo9I	GATC	7 cut(s)	7, 40, 49, 61, 72, 167, 532
LguI	GCTCTTC	2 cut(s)	487, 865
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	2 cut(s)	44, 534
LweI	GCATC	4 cut(s)	559, 631, 738, 806
MaeI	CTAG	4 cut(s)	24, 740, 831, 898
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	7 cut(s)	9, 42, 51, 63, 74, 169, 534
MboI	GATC	7 cut(s)	7, 40, 49, 61, 72, 167, 532
MhlI	GDGCHC	3 cut(s)	253, 739, 877
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	4 cut(s)	242, 328, 412, 474
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	496
MmeI	TCCRAC	2 cut(s)	696, 847
Mox20I	TGGCCA	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	208
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	3 cut(s)	618, 630, 651
MslI	CAYNNNNRTG	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	525
MspI	CCGG	2 cut(s)	120, 407
MspR9I	CCNGG	2 cut(s)	120, 407
MwoI	GCNNNNNNNGC	4 cut(s)	129, 269, 525, 528
NciI	CCSGG	2 cut(s)	120, 407
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	7 cut(s)	7, 40, 49, 61, 72, 167, 532
NlaIII	CATG	7 cut(s)	47, 56, 92, 187, 235, 496, 693
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	305
PagI	TCATGA	1 cut(s)	43
PaqCI	CACCTGC	1 cut(s)	886
PciSI	GCTCTTC	2 cut(s)	487, 865
PdmI	GAANNNNTTC	1 cut(s)	208
PflFI	GACNNNGTC	1 cut(s)	541
PfoI	TCCNGGA	1 cut(s)	405
PkrI	GCNGC	5 cut(s)	34, 521, 524, 527, 530
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
Ppu21I	YACGTR	1 cut(s)	773
PshBI	ATTAAT	1 cut(s)	651
PspFI	CCCAGC	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	427
PsyI	GACNNNGTC	1 cut(s)	541
RsaI	GTAC	3 cut(s)	292, 316, 675
RsaNI	GTAC	3 cut(s)	291, 315, 674
RseI	CAYNNNNRTG	1 cut(s)	230
SapI	GCTCTTC	2 cut(s)	487, 865
SaqAI	TTAA	3 cut(s)	618, 630, 651
SatI	GCNGC	5 cut(s)	33, 520, 523, 526, 529
Sau3AI	GATC	7 cut(s)	7, 40, 49, 61, 72, 167, 532
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	2 cut(s)	120, 407
SduI	GDGCHC	3 cut(s)	253, 739, 877
SfaNI	GCATC	4 cut(s)	559, 631, 738, 806
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	4 cut(s)	242, 328, 412, 474
SsiI	CCGC	5 cut(s)	101, 113, 519, 525, 528
SspMI	CTAG	4 cut(s)	24, 740, 831, 898
StyD4I	CCNGG	2 cut(s)	118, 405
StyI	CCWWGG	3 cut(s)	183, 446, 514
TaaI	ACNGT	2 cut(s)	314, 541
TaiI	ACGT	1 cut(s)	775
TasI	AATT	4 cut(s)	242, 328, 412, 474
TauI	GCSGC	3 cut(s)	522, 528, 531
Tru1I	TTAA	3 cut(s)	618, 630, 651
Tru9I	TTAA	3 cut(s)	618, 630, 651
TscAI	CASTG	2 cut(s)	199, 253
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	2 cut(s)	32, 522
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	3 cut(s)	17, 678, 710
TspRI	CASTG	2 cut(s)	199, 253
Tth111I	GACNNNGTC	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	427
VspI	ATTAAT	1 cut(s)	651
XapI	RAATTY	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	208
XspI	CTAG	4 cut(s)	24, 740, 831, 898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.