Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0013306

Physical Location & Seq

Genomic Coordinates Forward (+)

5607916 .. 5609659

Gene Structure 1744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g05760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAATGATCGAAGGGCTGGCACCAGCCAAGGAGTACAAGATCATCATGATGATCATGGTGAAGATGAGCACAACATCAGGGACATCCATGCCTTGACACCGCCTCGCCCGCTGCCTCCCGCCAATGGCGGCGGCCGCAGAAGAGAAGCTTGGGAAACCAGTAGCCAAACATCTTTGTCCATGGCCAGTGCTGAATTAGGAACAGACTTCACCACCATGAGTAGAGAGTTCAGTGCTTTAGTAGTTGCAGGGTCGGCAATCGGGACAAATAATAGTACCACAAATGATAGTGACCATAATACTATGATTAATCAAGGGAACAATAATTTGGGTAGGATCGGAGAGGAGGACAATAATATGCATGAGCAGGAGCTGGAGAGCAACCATTTGGCTATAGTCCCGGATAATTACAACCATTTGGACCCGATTACCTACTCTCCAAGGAATAGTCAGGCTAATAACTATATTGGGTCTTCATCAAGCACGGTTAGGACTCGGGATCACCAAGAAGGCAGCGGCGGCGATCAGATGGTTTCGGTGGATCGGGTGAAGAAGGAAGAGGTTGAAACAAAGATATCGGCTTGGCAAAACAACAAGATTGCCAAGCTTAATAACAGGTTTAAGAGGGAGGATGCTATTATTAATGGGTGGGAAAGTGAGCAGGTTCAGAAAGCTTCTTTATGGATGAAGAAAGTTGAGAGGAAGTTGGAGGAGAAGAGAGCAAGAGCCCTAGAGAAGATGCAAAACGACATAGCCAAAGCACGTAGGAAAGCAGAGGAGAGGAAGGCATCGGCAGAGGCTAAAAGGGGAACGAAAGTGGCTAGGGTTCTTGAAATTGCCAATCTAATGAGAGCTGTCGGAAGAGCACCTGCCAAAAAGTCCTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0016020 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0033993 GO:0042221 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0097305 GO:0097306 GO:1900457 GO:1900458 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

297

Amino Acids

33.11

Weight (kDa)

7.97

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_C	PF03763	186 - 292	6.1e-30	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41870 AT3G57540
fragaria_vesca	FvH4_6g23510
malus_domestica	MD12G1072300.v1.1 MD14G1069500.v1.1
prunus_persica	Prupe.7G064800_v2.0.a1
pyrus_communis	pycom12g06070 pycom14g05760
rosa_chinensis	RchiOBHm_Chr3g0481501
rosa_laevigata	RLG00000023391
rosa_multiflora	Rmu_sc0010846.1_g000007
rosa_roxburghii	Rroxscaffold_6G00400380
rosa_rugosa	Rorug03G0192300
rosa_samantha	Rh3AG243500 Rh3BG278400 Rh3CG273600 Rh3DG270400
rosa_wichuraiana	Rw3G021750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	877
Acc36I	ACCTGC	2 cut(s)	652, 877
AccB1I	GGYRCC	1 cut(s)	20
AciI	CCGC	8 cut(s)	101, 110, 120, 129, 132, 136, 516, 519
AclWI	GGATC	3 cut(s)	344, 507, 549
AcoI	YGGCCR	2 cut(s)	133, 183
AfaI	GTAC	2 cut(s)	36, 277
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	566, 833
AjuI	GAANNNNNNNTTGG	5 cut(s)	133, 165, 311, 343, 866
AluBI	AGCT	5 cut(s)	149, 373, 607, 674, 854
AluI	AGCT	5 cut(s)	149, 373, 607, 674, 854
Alw21I	GWGCWC	2 cut(s)	72, 868
AlwI	GGATC	3 cut(s)	344, 507, 549
AlwNI	CAGNNNCTG	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	495
AoxI	GGCC	2 cut(s)	133, 183
ApeKI	GCWGC	2 cut(s)	112, 513
AseI	ATTAAT	2 cut(s)	309, 642
AspS9I	GGNCC	1 cut(s)	421
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	4 cut(s)	71, 202, 494, 559
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	1 cut(s)	421
BalI	TGGCCA	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	730
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	2 cut(s)	72, 868
BbvI	GCAGC	2 cut(s)	99, 525
BccI	CCATC	1 cut(s)	523
BclI	TGATCA	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	401
BfaI	CTAG	2 cut(s)	731, 822
BfmI	CTRYAG	1 cut(s)	393
BfuAI	ACCTGC	2 cut(s)	652, 877
BisI	GCNGC	7 cut(s)	113, 130, 133, 136, 514, 517, 520
BlsI	GCNGC	7 cut(s)	114, 131, 134, 137, 515, 518, 521
Bme1390I	CCNGG	1 cut(s)	401
Bme18I	GGWCC	1 cut(s)	421
BmeT110I	CYCGRG	1 cut(s)	495
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	22, 423
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	3 cut(s)	622, 729, 797
BpiI	GAAGAC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	401
BsaAI	YACGTR	1 cut(s)	764
BsaJI	CCNNGG	3 cut(s)	28, 180, 440
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	159, 186
BseDI	CCNNGG	3 cut(s)	28, 180, 440
BseGI	GGATG	3 cut(s)	84, 637, 690
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseNI	ACTGG	2 cut(s)	159, 186
BseRI	GAGGAG	3 cut(s)	359, 725, 791
BseX3I	CGGCCG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	99, 525
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	2 cut(s)	135, 185
BshNI	GGYRCC	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	72, 868
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	401
BslFI	GGGAC	3 cut(s)	95, 277, 383
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmFI	GGGAC	3 cut(s)	95, 277, 383
BsnI	GGCC	2 cut(s)	135, 185
BsoBI	CYCGRG	1 cut(s)	495
Bsp1286I	GDGCHC	3 cut(s)	72, 730, 868
Bsp143I	GATC	7 cut(s)	7, 40, 52, 336, 499, 523, 541
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	8 cut(s)	101, 110, 120, 129, 132, 136, 516, 519
BspANI	GGCC	2 cut(s)	135, 185
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	22, 423
BspMI	ACCTGC	2 cut(s)	652, 877
BspPI	GGATC	3 cut(s)	344, 507, 549
BspQI	GCTCTTC	1 cut(s)	856
BspT107I	GGYRCC	1 cut(s)	20
BsrI	ACTGG	2 cut(s)	159, 186
BssECI	CCNNGG	3 cut(s)	28, 180, 440
BssMI	GATC	7 cut(s)	7, 40, 52, 336, 499, 523, 541
BssT1I	CCWWGG	3 cut(s)	28, 180, 440
Bst4CI	ACNGT	1 cut(s)	487
Bst6I	CTCTTC	4 cut(s)	136, 552, 710, 856
BstBAI	YACGTR	1 cut(s)	764
BstC8I	GCNNGC	2 cut(s)	19, 110
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	3 cut(s)	84, 637, 690
BstKTI	GATC	7 cut(s)	10, 43, 55, 339, 502, 526, 544
BstMBI	GATC	7 cut(s)	7, 40, 52, 336, 499, 523, 541
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 135, 254, 519
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	2 cut(s)	99, 525
BstV2I	GAAGAC	1 cut(s)	465
BstZI	CGGCCG	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	135, 185
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	84, 637, 690
BtsIMutI	CAGTG	2 cut(s)	193, 238
BveI	ACCTGC	2 cut(s)	652, 877
Cac8I	GCNNGC	2 cut(s)	19, 110
CaiI	CAGNNNCTG	1 cut(s)	373
CciI	TCATGA	1 cut(s)	46
CciNI	GCGGCCGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	421
Csp6I	GTAC	2 cut(s)	35, 276
CviAII	CATG	6 cut(s)	47, 56, 89, 181, 217, 362
CviQI	GTAC	2 cut(s)	35, 276
DpnI	GATC	7 cut(s)	9, 42, 54, 338, 501, 525, 543
DpnII	GATC	7 cut(s)	7, 40, 52, 336, 499, 523, 541
EaeI	YGGCCR	2 cut(s)	133, 183
EagI	CGGCCG	1 cut(s)	133
Eam1104I	CTCTTC	4 cut(s)	136, 552, 710, 856
EarI	CTCTTC	4 cut(s)	136, 552, 710, 856
EclXI	CGGCCG	1 cut(s)	133
Eco130I	CCWWGG	3 cut(s)	28, 180, 440
Eco24I	GRGCYC	1 cut(s)	730
Eco32I	GATATC	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	421
Eco52I	CGGCCG	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	495
EcoRV	GATATC	1 cut(s)	576
EcoT14I	CCWWGG	3 cut(s)	28, 180, 440
EcoT22I	ATGCAT	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	730
ErhI	CCWWGG	3 cut(s)	28, 180, 440
FaeI	CATG	6 cut(s)	50, 59, 92, 184, 220, 365
FalI	AAGNNNNNCTT	3 cut(s)	133, 165, 869
FaqI	GGGAC	3 cut(s)	95, 277, 383
FatI	CATG	6 cut(s)	46, 55, 88, 180, 216, 361
FauI	CCCGC	2 cut(s)	117, 127
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	7 cut(s)	113, 130, 133, 136, 514, 517, 520
FokI	GGATG	3 cut(s)	71, 644, 697
FriOI	GRGCYC	1 cut(s)	730
Fsp4HI	GCNGC	7 cut(s)	113, 130, 133, 136, 514, 517, 520
FspBI	CTAG	2 cut(s)	731, 822
GluI	GCNGC	7 cut(s)	113, 130, 133, 136, 514, 517, 520
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	2 cut(s)	135, 185
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	6 cut(s)	50, 59, 92, 184, 220, 365
HindIII	AAGCTT	3 cut(s)	147, 605, 672
HinfI	GANTC	1 cut(s)	493
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	4 cut(s)	71, 202, 494, 559
Hpy188I	TCNGA	4 cut(s)	341, 528, 669, 860
Hpy188III	TCNNGA	4 cut(s)	47, 262, 497, 830
HpyAV	CCTTC	4 cut(s)	6, 503, 547, 778
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	1 cut(s)	763
HpyCH4V	TGCA	3 cut(s)	248, 361, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 135, 254, 519
HpySE526I	ACGT	1 cut(s)	763
Hsp92II	CATG	6 cut(s)	50, 59, 92, 184, 220, 365
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	7 cut(s)	7, 40, 52, 336, 499, 523, 541
LguI	GCTCTTC	1 cut(s)	856
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	2 cut(s)	99, 525
LweI	GCATC	3 cut(s)	622, 729, 797
MaeI	CTAG	2 cut(s)	731, 822
MaeII	ACGT	1 cut(s)	763
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	7 cut(s)	9, 42, 54, 338, 501, 525, 543
MboI	GATC	7 cut(s)	7, 40, 52, 336, 499, 523, 541
MboII	GAAGA	9 cut(s)	74, 153, 465, 562, 569, 700, 727, 748, 873
MhlI	GDGCHC	3 cut(s)	72, 730, 868
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	4 cut(s)	194, 325, 406, 834
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	487
MmeI	TCCRAC	2 cut(s)	687, 838
Mox20I	TGGCCA	1 cut(s)	185
Mph1103I	ATGCAT	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	4 cut(s)	309, 609, 621, 642
MslI	CAYNNNNRTG	2 cut(s)	48, 215
Msp20I	TGGCCA	1 cut(s)	185
MspA1I	CMGCKG	2 cut(s)	112, 516
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	4 cut(s)	109, 135, 254, 519
NciI	CCSGG	1 cut(s)	401
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	7 cut(s)	7, 40, 52, 336, 499, 523, 541
NlaIII	CATG	6 cut(s)	50, 59, 92, 184, 220, 365
NlaIV	GGNNCC	2 cut(s)	22, 423
NmuCI	GTSAC	1 cut(s)	290
NotI	GCGGCCGC	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	363
PagI	TCATGA	1 cut(s)	46
PaqCI	CACCTGC	1 cut(s)	877
PciSI	GCTCTTC	1 cut(s)	856
PfoI	TCCNGGA	1 cut(s)	399
PkrI	GCNGC	7 cut(s)	114, 131, 134, 137, 515, 518, 521
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
Ppu21I	YACGTR	1 cut(s)	764
PshBI	ATTAAT	2 cut(s)	309, 642
PspN4I	GGNNCC	2 cut(s)	22, 423
PspPI	GGNCC	1 cut(s)	421
PstNI	CAGNNNCTG	1 cut(s)	373
RsaI	GTAC	2 cut(s)	36, 277
RsaNI	GTAC	2 cut(s)	35, 276
RseI	CAYNNNNRTG	2 cut(s)	48, 215
SapI	GCTCTTC	1 cut(s)	856
SaqAI	TTAA	4 cut(s)	309, 609, 621, 642
SatI	GCNGC	7 cut(s)	113, 130, 133, 136, 514, 517, 520
Sau3AI	GATC	7 cut(s)	7, 40, 52, 336, 499, 523, 541
Sau96I	GGNCC	1 cut(s)	421
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	3 cut(s)	72, 730, 868
SfaNI	GCATC	3 cut(s)	622, 729, 797
SfcI	CTRYAG	1 cut(s)	393
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	2 cut(s)	48, 215
Sse9I	AATT	4 cut(s)	194, 325, 406, 834
SsiI	CCGC	8 cut(s)	101, 110, 120, 129, 132, 136, 516, 519
SspMI	CTAG	2 cut(s)	731, 822
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	3 cut(s)	28, 180, 440
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	1 cut(s)	766
TaqI	TCGA	1 cut(s)	10
TasI	AATT	4 cut(s)	194, 325, 406, 834
TatI	WGTACW	1 cut(s)	34
TauI	GCSGC	5 cut(s)	132, 135, 138, 519, 522
Tru1I	TTAA	4 cut(s)	309, 609, 621, 642
Tru9I	TTAA	4 cut(s)	309, 609, 621, 642
TscAI	CASTG	2 cut(s)	193, 238
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	2 cut(s)	112, 513
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	17, 465, 701
TspRI	CASTG	2 cut(s)	193, 238
VpaK11BI	GGWCC	1 cut(s)	421
VspI	ATTAAT	2 cut(s)	309, 642
XspI	CTAG	2 cut(s)	731, 822
Zsp2I	ATGCAT	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.