Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0013306

Physical Location & Seq

Genomic Coordinates Reverse (-)

16930655 .. 16931305

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0192300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTCTTCTACTCTTACCCTATTGTTTGTTAATTTCATCCTCCTATGTGCCACAACATTAGCTTCCGATCCCGACCCAATTCAAGACTATTGCTTACCGAATCTGAAATCCGGTGCATCAAGAACAGCCCACCTCACCATCATCCCATGCAAGAACTCGTCTGAGGCCACCACCGATGACTTCGTCTTCTCCGGAATGAAGGTACCCGGGAACTTCACCGACACGGGCCTCGCGGCCATCTCGGTGAACCCGACAATCTTTCCAGGGATCAACACACTAGGGATGTCATTTGTAAGAGCTGATCTCAAGGTGGGTGGAATCAATCCACCACATTTCCACCCAAGAGCCACAGAAATAGCATATATAGTGCAAGGGAGTGTTTATTCTGGGTTTGTTGATTCTACAAATAGGGTTTTCGCTAGGGTAGTTGAGCAAGGAGAGGTCATGGTGTTCCCCAGGGGTCTAGTTCACTTTTTAATGAATGTCGGCAAGAAGCCAGCTACAGTATTTGGAAGCTTCAATAGCCAAAATCCAGGAATGCAAAAGATCCCAGCGGCTATTTTTGGGTCTGGTATAAATGATAAGCTCTTGGAGAAGGCATTTGGATTAAGTCCTAAGCAGATTGCTCTGATGAGAAGAAGATTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0016020 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0033993 GO:0042221 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0097305 GO:0097306 GO:1900457 GO:1900458 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

216

Amino Acids

23.27

Weight (kDa)

9.27

Isoelectric Point (pI)

22.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	69 - 208	6.9e-44	Cupin
Cupin_2	PF07883	100 - 169	8.2e-10	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41870 AT3G57540
fragaria_vesca	FvH4_6g23510
malus_domestica	MD12G1072300.v1.1 MD14G1069500.v1.1
prunus_persica	Prupe.7G064800_v2.0.a1
pyrus_communis	pycom12g06070 pycom14g05760
rosa_chinensis	RchiOBHm_Chr3g0481501
rosa_laevigata	RLG00000023391
rosa_multiflora	Rmu_sc0010846.1_g000007
rosa_roxburghii	Rroxscaffold_6G00400380
rosa_rugosa	Rorug03G0192300
rosa_samantha	Rh3AG243500 Rh3BG278400 Rh3CG273600 Rh3DG270400
rosa_wichuraiana	Rw3G021750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	202
AccII	CGCG	1 cut(s)	233
AccIII	TCCGGA	1 cut(s)	191
AciI	CCGC	2 cut(s)	233, 554
AclWI	GGATC	3 cut(s)	62, 275, 541
AcoI	YGGCCR	1 cut(s)	234
AfaI	GTAC	1 cut(s)	204
AgsI	TTSAA	2 cut(s)	83, 520
AjnI	CCWGG	3 cut(s)	262, 455, 532
AluBI	AGCT	5 cut(s)	62, 299, 500, 516, 586
AluI	AGCT	5 cut(s)	62, 299, 500, 516, 586
AlwI	GGATC	3 cut(s)	62, 275, 541
Ama87I	CYCGRG	1 cut(s)	206
Aor13HI	TCCGGA	1 cut(s)	191
AoxI	GGCC	3 cut(s)	165, 226, 234
Asp718I	GGTACC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	226
AsuC2I	CCSGG	2 cut(s)	207, 208
AsuHPI	GGTGA	3 cut(s)	127, 208, 256
AvaI	CYCGRG	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	178
BccI	CCATC	2 cut(s)	146, 245
BciT130I	CCWGG	3 cut(s)	264, 457, 534
BcnI	CCSGG	2 cut(s)	207, 208
BfaI	CTAG	3 cut(s)	278, 420, 464
BfmI	CTRYAG	1 cut(s)	501
BisI	GCNGC	2 cut(s)	234, 555
BlsI	GCNGC	2 cut(s)	235, 556
Bme1390I	CCNGG	5 cut(s)	207, 208, 264, 457, 534
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	5 cut(s)	207, 208, 264, 457, 534
BmsI	GCATC	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	178
BplI	GAGNNNNNCTC	2 cut(s)	288, 320
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	2 cut(s)	207, 208
BsaJI	CCNNGG	4 cut(s)	206, 263, 455, 456
BsaWI	WCCGGW	2 cut(s)	110, 191
BseAI	TCCGGA	1 cut(s)	191
BseBI	CCWGG	3 cut(s)	264, 457, 534
BseDI	CCNNGG	4 cut(s)	206, 263, 455, 456
BseGI	GGATG	3 cut(s)	36, 141, 288
BseMII	CTCAG	1 cut(s)	153
BseYI	CCCAGC	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	167, 228, 236
BshNI	GGYRCC	1 cut(s)	202
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	3 cut(s)	111, 192, 207
BsmI	GAATGC	1 cut(s)	543
BsnI	GGCC	3 cut(s)	167, 228, 236
BsoBI	CYCGRG	1 cut(s)	206
Bsp13I	TCCGGA	1 cut(s)	191
Bsp143I	GATC	4 cut(s)	67, 267, 301, 546
BspACI	CCGC	2 cut(s)	233, 554
BspANI	GGCC	3 cut(s)	167, 228, 236
BspCNI	CTCAG	1 cut(s)	154
BspEI	TCCGGA	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	204
BspPI	GGATC	3 cut(s)	62, 275, 541
BspT107I	GGYRCC	1 cut(s)	202
BssECI	CCNNGG	4 cut(s)	206, 263, 455, 456
BssMI	GATC	4 cut(s)	67, 267, 301, 546
Bst2UI	CCWGG	3 cut(s)	264, 457, 534
Bst4CI	ACNGT	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	2 cut(s)	162, 615
BstF5I	GGATG	3 cut(s)	36, 141, 288
BstFNI	CGCG	1 cut(s)	233
BstKTI	GATC	4 cut(s)	70, 270, 304, 549
BstMBI	GATC	4 cut(s)	67, 267, 301, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	522
BstNI	CCWGG	3 cut(s)	264, 457, 534
BstSCI	CCNGG	5 cut(s)	205, 206, 262, 455, 532
BstSFI	CTRYAG	1 cut(s)	501
BstUI	CGCG	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	546
BstYI	RGATCY	1 cut(s)	546
BsuRI	GGCC	3 cut(s)	167, 228, 236
BtsCI	GGATG	3 cut(s)	36, 141, 288
Cac8I	GCNNGC	1 cut(s)	498
Cfr13I	GGNCC	1 cut(s)	226
Cfr9I	CCCGGG	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	203
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	2 cut(s)	147, 445
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	2 cut(s)	162, 615
DpnI	GATC	4 cut(s)	69, 269, 303, 548
DpnII	GATC	4 cut(s)	67, 267, 301, 546
EaeI	YGGCCR	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	206
EcoRII	CCWGG	3 cut(s)	262, 455, 532
FaeI	CATG	2 cut(s)	150, 448
FaiI	YATR	7 cut(s)	46, 148, 361, 363, 365, 446, 575
FatI	CATG	2 cut(s)	146, 444
Fnu4HI	GCNGC	2 cut(s)	234, 555
FokI	GGATG	3 cut(s)	23, 128, 295
Fsp4HI	GCNGC	2 cut(s)	234, 555
FspBI	CTAG	3 cut(s)	278, 420, 464
GluI	GCNGC	2 cut(s)	234, 555
GsaI	CCCAGC	1 cut(s)	554
HaeIII	GGCC	3 cut(s)	167, 228, 236
HapII	CCGG	3 cut(s)	111, 192, 207
Hin1II	CATG	2 cut(s)	150, 448
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	3 cut(s)	100, 318, 398
HpaII	CCGG	3 cut(s)	111, 192, 207
HphI	GGTGA	3 cut(s)	127, 208, 256
Hpy166II	GTNNAC	2 cut(s)	247, 469
Hpy188I	TCNGA	4 cut(s)	67, 105, 163, 630
Hpy188III	TCNNGA	4 cut(s)	71, 83, 120, 192
Hpy8I	GTNNAC	2 cut(s)	247, 469
HpyAV	CCTTC	2 cut(s)	193, 589
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4V	TGCA	4 cut(s)	116, 150, 370, 541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	522
HpyF3I	CTNAG	2 cut(s)	162, 615
Hsp92II	CATG	2 cut(s)	150, 448
Kpn2I	TCCGGA	1 cut(s)	191
KpnI	GGTACC	1 cut(s)	206
Kzo9I	GATC	4 cut(s)	67, 267, 301, 546
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	3 cut(s)	278, 420, 464
MalI	GATC	4 cut(s)	69, 269, 303, 548
MboI	GATC	4 cut(s)	67, 267, 301, 546
MboII	GAAGA	3 cut(s)	178, 648, 651
MflI	RGATCY	1 cut(s)	546
MluCI	AATT	2 cut(s)	31, 78
MnlI	CCTC	5 cut(s)	50, 143, 157, 239, 433
MroI	TCCGGA	1 cut(s)	191
MseI	TTAA	3 cut(s)	30, 476, 608
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	3 cut(s)	111, 192, 207
MspR9I	CCNGG	5 cut(s)	207, 208, 264, 457, 534
Mva1269I	GAATGC	1 cut(s)	543
MvaI	CCWGG	3 cut(s)	264, 457, 534
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	522
NciI	CCSGG	2 cut(s)	207, 208
NdeII	GATC	4 cut(s)	67, 267, 301, 546
NlaIII	CATG	2 cut(s)	150, 448
NlaIV	GGNNCC	1 cut(s)	204
PasI	CCCWGGG	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PctI	GAATGC	1 cut(s)	543
PfeI	GAWTC	3 cut(s)	100, 318, 398
PflFI	GACNNNGTC	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	2 cut(s)	235, 556
Psp6I	CCWGG	3 cut(s)	262, 455, 532
PspFI	CCCAGC	1 cut(s)	550
PspGI	CCWGG	3 cut(s)	262, 455, 532
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	546
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	3 cut(s)	30, 476, 608
SatI	GCNGC	2 cut(s)	234, 555
Sau3AI	GATC	4 cut(s)	67, 267, 301, 546
Sau96I	GGNCC	1 cut(s)	226
ScrFI	CCNGG	5 cut(s)	207, 208, 264, 457, 534
SetI	ASST	9 cut(s)	64, 135, 204, 301, 312, 444, 502, 518, 588
SfaNI	GCATC	1 cut(s)	125
SfcI	CTRYAG	1 cut(s)	501
SmaI	CCCGGG	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	2 cut(s)	31, 78
SsiI	CCGC	2 cut(s)	233, 554
SspMI	CTAG	3 cut(s)	278, 420, 464
StyD4I	CCNGG	5 cut(s)	205, 206, 262, 455, 532
TaaI	ACNGT	1 cut(s)	505
TasI	AATT	2 cut(s)	31, 78
TauI	GCSGC	2 cut(s)	236, 557
TfiI	GAWTC	3 cut(s)	100, 318, 398
Tru1I	TTAA	3 cut(s)	30, 476, 608
Tru9I	TTAA	3 cut(s)	30, 476, 608
TspDTI	ATGAA	3 cut(s)	25, 212, 494
TspMI	CCCGGG	1 cut(s)	206
Tth111I	GACNNNGTC	1 cut(s)	182
XmaI	CCCGGG	1 cut(s)	206
XspI	CTAG	3 cut(s)	278, 420, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.