Rh3AG243500

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0013306
Physical Location & Seq
Forward (+)
25594808 .. 25597348
2541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG243500.1

Sequence Viewer

Length: 882 bp
ATGTTGAATGATCAAAGGGTTGGCACCAGCCGTGAACATGAAGATGATGATCACGGTGACGATGAGATAGTCCGGGATATCCACGCCTTGACACCACCTCATCCTGCACAGGCTGCTAATCGTGGAGGCCGTCAAAGAGAGGCTTGGGAAACTGGTAGTCAGAGATCATCATCTCTGTCCGTGGCTAGTATTGAAGGTGCTTCTAGTGAGAATTTTACTTCCATGAGTAGAGAGTTCAGTGCTCTAGTGGTTGCAGGGTCAACAATTCCGCATAGTGGTTTTAGTAACAATGATATGAATGATAGTGCTGTAAATAATCCTGGAAACAACAACTTGGGATTGGGTAGAATTGGAGAGGAGGACAATATGCTGGAGGAGACCAATCCCTTGGCTATAGTAACAGATAATTATCACTCTTCGGATCCAATTGCTTCTCCAAGAAGTATCGGGGCTAACAATAATAACATGGCTAGCTCTTCTTCATCAAGCATGATTGGCACTAATCAAGGGCATCAAGGTGAGATTTCTGTGCATATGGTCAAGAAGGAAGAGGTGGAATCAAAGATATCCGCGTGGCAGAACGCAAAGATTGCCAAGGTTAACAACAGGTTCAAGAGGGAGGATGCTGTTATAAATGGGTGGGAAAGTGAGCAGGTTCAGAAAGCTTCTACATGGATGAAGAAAATTGAGAGGAAGTTGGAAGAGAAAAGAGCAAGGGCCTTCGAGAAGATGCAAAATGATATAGCCAAAGCTCACAGAAAAGCAGAGGAGAGGAAGGCATCCTCTGAGGCTAAGAGAGGAACAAAAGTGGCCAGGGTTCTTGAAATAGCCAATTTAATGAGAGCTGTTGGAAGAGCACCTGCCAAAAAGTCCTTCTTCTAA

Protein Analysis

293

Amino Acids

32.22

Weight (kDa)

6.78

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 183 - 289 9.9e-31 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41870 AT3G57540
fragaria_vesca FvH4_6g23510
malus_domestica MD12G1072300.v1.1 MD14G1069500.v1.1
prunus_persica Prupe.7G064800_v2.0.a1
pyrus_communis pycom12g06070 pycom14g05760
rosa_chinensis RchiOBHm_Chr3g0481501
rosa_laevigata RLG00000023391
rosa_multiflora Rmu_sc0010846.1_g000007
rosa_roxburghii Rroxscaffold_6G00400380
rosa_rugosa Rorug03G0192300
rosa_samantha Rh3AG243500 Rh3BG278400 Rh3CG273600 Rh3DG270400
rosa_wichuraiana Rw3G021750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 632
AarI CACCTGC 1 cut(s) 868
Acc36I ACCTGC 2 cut(s) 643, 868
AccB1I GGYRCC 1 cut(s) 23
AccII CGCG 1 cut(s) 572
AciI CCGC 2 cut(s) 269, 570
AclWI GGATC 2 cut(s) 416, 429
AcoI YGGCCR 1 cut(s) 810
AcsI RAATTY 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 4 cut(s) 7, 194, 613, 824
AjnI CCWGG 2 cut(s) 319, 812
AjuI GAANNNNNNNTTGG 1 cut(s) 857
AluBI AGCT 4 cut(s) 474, 665, 752, 845
AluI AGCT 4 cut(s) 474, 665, 752, 845
Alw21I GWGCWC 2 cut(s) 244, 859
Alw26I GTCTC 1 cut(s) 371
AlwI GGATC 2 cut(s) 416, 429
AoxI GGCC 3 cut(s) 127, 717, 810
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 211
AspS9I GGNCC 1 cut(s) 717
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 68, 530
AsuNHI GCTAGC 1 cut(s) 470
BalI TGGCCA 1 cut(s) 812
BamHI GGATCC 1 cut(s) 421
BanI GGYRCC 1 cut(s) 23
Bbv12I GWGCWC 2 cut(s) 244, 859
BbvI GCAGC 1 cut(s) 100
BceAI ACGGC 2 cut(s) 15, 114
BciT130I CCWGG 2 cut(s) 321, 814
BclI TGATCA 2 cut(s) 10, 49
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 4 cut(s) 186, 204, 245, 471
BfmI CTRYAG 1 cut(s) 393
BfuAI ACCTGC 2 cut(s) 643, 868
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 3 cut(s) 74, 321, 814
BmgT120I GGNCC 1 cut(s) 717
BmiI GGNNCC 2 cut(s) 25, 423
BmrFI CCNGG 3 cut(s) 74, 321, 814
BmsI GCATC 4 cut(s) 520, 613, 720, 788
BmtI GCTAGC 1 cut(s) 474
BpmI CTGGAG 1 cut(s) 392
BpuMI CCSGG 1 cut(s) 74
BsaBI GATNNNNATC 3 cut(s) 48, 169, 408
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 4 cut(s) 180, 387, 594, 813
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 157
Bse8I GATNNNNATC 3 cut(s) 48, 169, 408
BseBI CCWGG 2 cut(s) 321, 814
BseDI CCNNGG 4 cut(s) 180, 387, 594, 813
BseGI GGATG 4 cut(s) 100, 628, 681, 779
BseJI GATNNNNATC 3 cut(s) 48, 169, 408
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 777
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 3 cut(s) 371, 389, 782
BseXI GCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 572
BshFI GGCC 3 cut(s) 129, 719, 812
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 244, 859
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 371
BsnI GGCC 3 cut(s) 129, 719, 812
Bso31I GGTCTC 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 244, 859
Bsp143I GATC 4 cut(s) 10, 49, 164, 421
BspACI CCGC 2 cut(s) 269, 570
BspANI GGCC 3 cut(s) 129, 719, 812
BspCNI CTCAG 1 cut(s) 778
BspFNI CGCG 1 cut(s) 572
BspLI GGNNCC 2 cut(s) 25, 423
BspMI ACCTGC 2 cut(s) 643, 868
BspOI GCTAGC 1 cut(s) 474
BspPI GGATC 2 cut(s) 416, 429
BspQI GCTCTTC 2 cut(s) 481, 847
BspT107I GGYRCC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 371
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 4 cut(s) 180, 387, 594, 813
BssMI GATC 4 cut(s) 10, 49, 164, 421
BssT1I CCWWGG 2 cut(s) 387, 594
Bst2UI CCWGG 2 cut(s) 321, 814
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 5 cut(s) 421, 481, 543, 696, 847
BstAPI GCANNNNNTGC 2 cut(s) 113, 590
BstC8I GCNNGC 1 cut(s) 472
BstDEI CTNAG 2 cut(s) 786, 792
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 4 cut(s) 100, 628, 681, 779
BstFNI CGCG 1 cut(s) 572
BstKTI GATC 4 cut(s) 13, 52, 167, 424
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 4 cut(s) 10, 49, 164, 421
BstMWI GCNNNNNNNGC 3 cut(s) 113, 495, 590
BstNI CCWGG 2 cut(s) 321, 814
BstSCI CCNGG 3 cut(s) 72, 319, 812
BstSFI CTRYAG 1 cut(s) 393
BstUI CGCG 1 cut(s) 572
BstV1I GCAGC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 421
BstXI CCANNNNNNTGG 1 cut(s) 388
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 3 cut(s) 129, 719, 812
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 4 cut(s) 100, 628, 681, 779
BtsIMutI CAGTG 1 cut(s) 244
BveI ACCTGC 2 cut(s) 643, 868
Cac8I GCNNGC 1 cut(s) 472
Cfr13I GGNCC 1 cut(s) 717
CviAII CATG 5 cut(s) 38, 223, 466, 490, 672
DdeI CTNAG 2 cut(s) 786, 792
DpnI GATC 4 cut(s) 12, 51, 166, 423
DpnII GATC 4 cut(s) 10, 49, 164, 421
EaeI YGGCCR 1 cut(s) 810
Eam1104I CTCTTC 5 cut(s) 421, 481, 543, 696, 847
EarI CTCTTC 5 cut(s) 421, 481, 543, 696, 847
Eco130I CCWWGG 2 cut(s) 387, 594
Eco31I GGTCTC 1 cut(s) 371
Eco32I GATATC 2 cut(s) 79, 567
EcoO109I RGGNCCY 1 cut(s) 717
EcoRII CCWGG 2 cut(s) 319, 812
EcoRV GATATC 2 cut(s) 79, 567
EcoT14I CCWWGG 2 cut(s) 387, 594
ErhI CCWWGG 2 cut(s) 387, 594
FaeI CATG 5 cut(s) 41, 226, 469, 493, 675
FalI AAGNNNNNCTT 3 cut(s) 127, 159, 860
FatI CATG 5 cut(s) 37, 222, 465, 489, 671
FauNDI CATATG 1 cut(s) 534
FbaI TGATCA 2 cut(s) 10, 49
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 4 cut(s) 87, 635, 688, 766
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 4 cut(s) 186, 204, 245, 471
GluI GCNGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 392
HaeIII GGCC 3 cut(s) 129, 719, 812
HapII CCGG 1 cut(s) 73
Hin1II CATG 5 cut(s) 41, 226, 469, 493, 675
HincII GTYRAC 2 cut(s) 261, 601
HindII GTYRAC 2 cut(s) 261, 601
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 1 cut(s) 557
HpaI GTTAAC 1 cut(s) 601
HpaII CCGG 1 cut(s) 73
HphI GGTGA 2 cut(s) 68, 530
Hpy166II GTNNAC 3 cut(s) 35, 261, 601
Hpy188I TCNGA 4 cut(s) 162, 421, 660, 787
Hpy188III TCNNGA 4 cut(s) 541, 613, 724, 821
Hpy8I GTNNAC 3 cut(s) 35, 261, 601
HpyAV CCTTC 4 cut(s) 188, 538, 730, 769
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 4 cut(s) 107, 254, 532, 733
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 495, 590
HpyF3I CTNAG 2 cut(s) 786, 792
Hsp92II CATG 5 cut(s) 41, 226, 469, 493, 675
Ksp22I TGATCA 2 cut(s) 10, 49
KspAI GTTAAC 1 cut(s) 601
Kzo9I GATC 4 cut(s) 10, 49, 164, 421
LguI GCTCTTC 2 cut(s) 481, 847
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 4 cut(s) 520, 613, 720, 788
MaeI CTAG 4 cut(s) 186, 204, 245, 471
MaeIII GTNAC 3 cut(s) 56, 284, 397
MalI GATC 4 cut(s) 12, 51, 166, 423
MboI GATC 4 cut(s) 10, 49, 164, 421
MfeI CAATTG 1 cut(s) 426
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 2 cut(s) 244, 859
MlsI TGGCCA 1 cut(s) 812
MluCI AATT 7 cut(s) 211, 264, 348, 406, 426, 684, 832
MluNI TGGCCA 1 cut(s) 812
MmeI TCCRAC 2 cut(s) 678, 829
Mox20I TGGCCA 1 cut(s) 812
MscI TGGCCA 1 cut(s) 812
MseI TTAA 2 cut(s) 600, 836
MslI CAYNNNNRTG 2 cut(s) 42, 516
Msp20I TGGCCA 1 cut(s) 812
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 3 cut(s) 74, 321, 814
MunI CAATTG 1 cut(s) 426
MvaI CCWGG 2 cut(s) 321, 814
MvnI CGCG 1 cut(s) 572
MwoI GCNNNNNNNGC 3 cut(s) 113, 495, 590
NciI CCSGG 1 cut(s) 74
NdeI CATATG 1 cut(s) 534
NdeII GATC 4 cut(s) 10, 49, 164, 421
NheI GCTAGC 1 cut(s) 470
NlaIII CATG 5 cut(s) 41, 226, 469, 493, 675
NlaIV GGNNCC 2 cut(s) 25, 423
NmuCI GTSAC 1 cut(s) 56
PaqCI CACCTGC 1 cut(s) 868
PciSI GCTCTTC 2 cut(s) 481, 847
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PfeI GAWTC 1 cut(s) 557
PfoI TCCNGGA 2 cut(s) 72, 319
PkrI GCNGC 1 cut(s) 115
PsiI TTATAA 1 cut(s) 632
Psp6I CCWGG 2 cut(s) 319, 812
PspGI CCWGG 2 cut(s) 319, 812
PspN4I GGNNCC 2 cut(s) 25, 423
PspPI GGNCC 1 cut(s) 717
PsuI RGATCY 1 cut(s) 421
RseI CAYNNNNRTG 2 cut(s) 42, 516
SapI GCTCTTC 2 cut(s) 481, 847
SaqAI TTAA 2 cut(s) 600, 836
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 4 cut(s) 10, 49, 164, 421
Sau96I GGNCC 1 cut(s) 717
ScrFI CCNGG 3 cut(s) 74, 321, 814
SduI GDGCHC 2 cut(s) 244, 859
SfaNI GCATC 4 cut(s) 520, 613, 720, 788
SfcI CTRYAG 1 cut(s) 393
SmiMI CAYNNNNRTG 2 cut(s) 42, 516
Sse9I AATT 7 cut(s) 211, 264, 348, 406, 426, 684, 832
SsiI CCGC 2 cut(s) 269, 570
SspMI CTAG 4 cut(s) 186, 204, 245, 471
StyD4I CCNGG 3 cut(s) 72, 319, 812
StyI CCWWGG 2 cut(s) 387, 594
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 723
TasI AATT 7 cut(s) 211, 264, 348, 406, 426, 684, 832
TfiI GAWTC 1 cut(s) 557
Tru1I TTAA 2 cut(s) 600, 836
Tru9I TTAA 2 cut(s) 600, 836
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 4 cut(s) 54, 311, 471, 692
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 1 cut(s) 244
XapI RAATTY 1 cut(s) 211
XspI CTAG 4 cut(s) 186, 204, 245, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.