Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010846.1

Orthogroup ID

OG0013306

Physical Location & Seq

Genomic Coordinates Reverse (-)

45563 .. 46836

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010846.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgttgaatgatcaaagggttggcaccagccatgaacatgaagatgatgatcacggtgacgatgagatagtccgggatatccacgccttgacaccacctcatcctgcacaggctgctaatcgtggtggccgtcaaagagaggcttgggaaactggcagtcagagatcatcatctctgtccgtggctagtattgaaggtgcttctagtgagaattttacttccatgagtagagagttcagtgctctagtggttgcagggtcaacaattccgcatagtggttttagtaacaatgatatgaatgatagtgctgtaaataatcctggaaacaacaacttgggattgggtagaattggagaggaggacaatatgccggaggagaccaatcccttggctatagtaacagataattatcactcttcggacccaattgcttctccaagaagtatcggggctaacaataataacatggctagctcttcttcatcaagcatgattggcactaatcaaggtgagatttctgtgcatatggtcaagaaggaagaggtggaatcaaagatatccgcgtggcagaacgcaaagattgccaaggttaacaacaggttcaagagggaggatgctgttataaatgggtgggaaagtgagcaggtgcagaaagcttctacatggatgaagaaaattgagaggaagttggaagagaaaagagcaagggccttcgagaagatgcaaaatgatatagccaaagctcacagaaaagcagaggagaggaaggcatccgctgaggctaagagaggaacaaaagtggccagggttcttgaaatagccaatttaatgagagctgttggaagagcacctgccaaaaagtccttcttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0016020 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0033993 GO:0042221 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0097305 GO:0097306 GO:1900457 GO:1900458 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

290

Amino Acids

31.85

Weight (kDa)

6.53

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41870 AT3G57540
fragaria_vesca	FvH4_6g23510
malus_domestica	MD12G1072300.v1.1 MD14G1069500.v1.1
prunus_persica	Prupe.7G064800_v2.0.a1
pyrus_communis	pycom12g06070 pycom14g05760
rosa_chinensis	RchiOBHm_Chr3g0481501
rosa_laevigata	RLG00000023391
rosa_multiflora	Rmu_sc0010846.1_g000007
rosa_roxburghii	Rroxscaffold_6G00400380
rosa_rugosa	Rorug03G0192300
rosa_samantha	Rh3AG243500 Rh3BG278400 Rh3CG273600 Rh3DG270400
rosa_wichuraiana	Rw3G021750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AarI	CACCTGC	2 cut(s)	634, 859
Acc36I	ACCTGC	2 cut(s)	634, 859
AccB1I	GGYRCC	1 cut(s)	23
AccII	CGCG	1 cut(s)	563
AciI	CCGC	3 cut(s)	269, 561, 774
AcoI	YGGCCR	2 cut(s)	127, 801
AcsI	RAATTY	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	4 cut(s)	7, 194, 604, 815
AjnI	CCWGG	2 cut(s)	319, 803
AjuI	GAANNNNNNNTTGG	1 cut(s)	848
AluBI	AGCT	4 cut(s)	474, 656, 743, 836
AluI	AGCT	4 cut(s)	474, 656, 743, 836
Alw21I	GWGCWC	2 cut(s)	244, 850
Alw26I	GTCTC	1 cut(s)	371
AoxI	GGCC	3 cut(s)	127, 708, 801
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	211
AspS9I	GGNCC	2 cut(s)	421, 708
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	68, 521
AsuNHI	GCTAGC	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	421
BalI	TGGCCA	1 cut(s)	803
BanI	GGYRCC	1 cut(s)	23
Bbv12I	GWGCWC	2 cut(s)	244, 850
BbvCI	CCTCAGC	1 cut(s)	777
BbvI	GCAGC	1 cut(s)	100
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	2 cut(s)	321, 805
BclI	TGATCA	2 cut(s)	10, 49
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	4 cut(s)	186, 204, 245, 471
BfmI	CTRYAG	1 cut(s)	393
BfuAI	ACCTGC	2 cut(s)	634, 859
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	3 cut(s)	74, 321, 805
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	2 cut(s)	421, 708
BmiI	GGNNCC	2 cut(s)	25, 423
BmrFI	CCNGG	3 cut(s)	74, 321, 805
BmsI	GCATC	3 cut(s)	604, 711, 779
BmtI	GCTAGC	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	777
BpuMI	CCSGG	1 cut(s)	74
BsaBI	GATNNNNATC	3 cut(s)	48, 169, 408
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	4 cut(s)	180, 387, 585, 804
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	157
Bse8I	GATNNNNATC	3 cut(s)	48, 169, 408
BseBI	CCWGG	2 cut(s)	321, 805
BseDI	CCNNGG	4 cut(s)	180, 387, 585, 804
BseGI	GGATG	4 cut(s)	100, 619, 672, 770
BseJI	GATNNNNATC	3 cut(s)	48, 169, 408
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	768
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	3 cut(s)	371, 389, 773
BseXI	GCAGC	1 cut(s)	100
BsgI	GTGCAG	2 cut(s)	90, 668
Bsh1236I	CGCG	1 cut(s)	563
BshFI	GGCC	3 cut(s)	129, 710, 803
BshNI	GGYRCC	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	244, 850
BsiSI	CCGG	2 cut(s)	73, 371
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	371
BsnI	GGCC	3 cut(s)	129, 710, 803
Bso31I	GGTCTC	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	244, 850
Bsp143I	GATC	3 cut(s)	10, 49, 164
BspACI	CCGC	3 cut(s)	269, 561, 774
BspANI	GGCC	3 cut(s)	129, 710, 803
BspCNI	CTCAG	1 cut(s)	769
BspFNI	CGCG	1 cut(s)	563
BspLI	GGNNCC	2 cut(s)	25, 423
BspMI	ACCTGC	2 cut(s)	634, 859
BspOI	GCTAGC	1 cut(s)	474
BspQI	GCTCTTC	2 cut(s)	481, 838
BspT107I	GGYRCC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	4 cut(s)	180, 387, 585, 804
BssMI	GATC	3 cut(s)	10, 49, 164
BssT1I	CCWWGG	2 cut(s)	387, 585
Bst2UI	CCWGG	2 cut(s)	321, 805
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	5 cut(s)	421, 481, 534, 687, 838
BstAPI	GCANNNNNTGC	2 cut(s)	113, 581
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	2 cut(s)	777, 783
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	4 cut(s)	100, 619, 672, 770
BstFNI	CGCG	1 cut(s)	563
BstKTI	GATC	3 cut(s)	13, 52, 167
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	3 cut(s)	10, 49, 164
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 495, 581
BstNI	CCWGG	2 cut(s)	321, 805
BstSCI	CCNGG	3 cut(s)	72, 319, 803
BstSFI	CTRYAG	1 cut(s)	393
BstUI	CGCG	1 cut(s)	563
BstV1I	GCAGC	1 cut(s)	100
BstXI	CCANNNNNNTGG	1 cut(s)	388
BsuRI	GGCC	3 cut(s)	129, 710, 803
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	4 cut(s)	100, 619, 672, 770
BtsIMutI	CAGTG	1 cut(s)	244
BveI	ACCTGC	2 cut(s)	634, 859
Cac8I	GCNNGC	1 cut(s)	472
Cfr13I	GGNCC	2 cut(s)	421, 708
CviAII	CATG	6 cut(s)	32, 38, 223, 466, 490, 663
DdeI	CTNAG	2 cut(s)	777, 783
DpnI	GATC	3 cut(s)	12, 51, 166
DpnII	GATC	3 cut(s)	10, 49, 164
EaeI	YGGCCR	2 cut(s)	127, 801
Eam1104I	CTCTTC	5 cut(s)	421, 481, 534, 687, 838
EarI	CTCTTC	5 cut(s)	421, 481, 534, 687, 838
Eco130I	CCWWGG	2 cut(s)	387, 585
Eco31I	GGTCTC	1 cut(s)	371
Eco32I	GATATC	2 cut(s)	79, 558
Eco47I	GGWCC	1 cut(s)	421
EcoO109I	RGGNCCY	1 cut(s)	708
EcoRII	CCWGG	2 cut(s)	319, 803
EcoRV	GATATC	2 cut(s)	79, 558
EcoT14I	CCWWGG	2 cut(s)	387, 585
ErhI	CCWWGG	2 cut(s)	387, 585
FaeI	CATG	6 cut(s)	35, 41, 226, 469, 493, 666
FalI	AAGNNNNNCTT	3 cut(s)	127, 159, 851
FatI	CATG	6 cut(s)	31, 37, 222, 465, 489, 662
FauNDI	CATATG	1 cut(s)	525
FbaI	TGATCA	2 cut(s)	10, 49
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	4 cut(s)	87, 626, 679, 757
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	4 cut(s)	186, 204, 245, 471
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	129, 710, 803
HapII	CCGG	2 cut(s)	73, 371
Hin1II	CATG	6 cut(s)	35, 41, 226, 469, 493, 666
HincII	GTYRAC	2 cut(s)	261, 592
HindII	GTYRAC	2 cut(s)	261, 592
HindIII	AAGCTT	1 cut(s)	654
HinfI	GANTC	1 cut(s)	548
HpaI	GTTAAC	1 cut(s)	592
HpaII	CCGG	2 cut(s)	73, 371
HphI	GGTGA	2 cut(s)	68, 521
Hpy166II	GTNNAC	2 cut(s)	261, 592
Hpy188I	TCNGA	2 cut(s)	162, 421
Hpy188III	TCNNGA	4 cut(s)	532, 604, 715, 812
Hpy8I	GTNNAC	2 cut(s)	261, 592
HpyAV	CCTTC	4 cut(s)	188, 529, 721, 760
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	5 cut(s)	107, 254, 523, 649, 724
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 495, 581
HpyF3I	CTNAG	2 cut(s)	777, 783
Hsp92II	CATG	6 cut(s)	35, 41, 226, 469, 493, 666
Ksp22I	TGATCA	2 cut(s)	10, 49
KspAI	GTTAAC	1 cut(s)	592
Kzo9I	GATC	3 cut(s)	10, 49, 164
LguI	GCTCTTC	2 cut(s)	481, 838
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	3 cut(s)	604, 711, 779
MaeI	CTAG	4 cut(s)	186, 204, 245, 471
MaeIII	GTNAC	3 cut(s)	56, 284, 397
MalI	GATC	3 cut(s)	12, 51, 166
MboI	GATC	3 cut(s)	10, 49, 164
MfeI	CAATTG	1 cut(s)	426
MhlI	GDGCHC	2 cut(s)	244, 850
MlsI	TGGCCA	1 cut(s)	803
MluCI	AATT	7 cut(s)	211, 264, 348, 406, 426, 675, 823
MluNI	TGGCCA	1 cut(s)	803
MmeI	TCCRAC	2 cut(s)	669, 820
Mox20I	TGGCCA	1 cut(s)	803
MscI	TGGCCA	1 cut(s)	803
MseI	TTAA	2 cut(s)	591, 827
MslI	CAYNNNNRTG	2 cut(s)	36, 42
Msp20I	TGGCCA	1 cut(s)	803
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	2 cut(s)	73, 371
MspR9I	CCNGG	3 cut(s)	74, 321, 805
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	2 cut(s)	321, 805
MvnI	CGCG	1 cut(s)	563
MwoI	GCNNNNNNNGC	3 cut(s)	113, 495, 581
NciI	CCSGG	1 cut(s)	74
NdeI	CATATG	1 cut(s)	525
NdeII	GATC	3 cut(s)	10, 49, 164
NheI	GCTAGC	1 cut(s)	470
NlaIII	CATG	6 cut(s)	35, 41, 226, 469, 493, 666
NlaIV	GGNNCC	2 cut(s)	25, 423
NmuCI	GTSAC	1 cut(s)	56
PaqCI	CACCTGC	2 cut(s)	634, 859
PciSI	GCTCTTC	2 cut(s)	481, 838
PcsI	WCGNNNNNNNCGW	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	548
PfoI	TCCNGGA	2 cut(s)	72, 319
PkrI	GCNGC	1 cut(s)	115
PsiI	TTATAA	1 cut(s)	623
Psp6I	CCWGG	2 cut(s)	319, 803
PspGI	CCWGG	2 cut(s)	319, 803
PspN4I	GGNNCC	2 cut(s)	25, 423
PspPI	GGNCC	2 cut(s)	421, 708
RseI	CAYNNNNRTG	2 cut(s)	36, 42
SapI	GCTCTTC	2 cut(s)	481, 838
SaqAI	TTAA	2 cut(s)	591, 827
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	3 cut(s)	10, 49, 164
Sau96I	GGNCC	2 cut(s)	421, 708
ScrFI	CCNGG	3 cut(s)	74, 321, 805
SduI	GDGCHC	2 cut(s)	244, 850
SfaNI	GCATC	3 cut(s)	604, 711, 779
SfcI	CTRYAG	1 cut(s)	393
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	2 cut(s)	36, 42
Sse9I	AATT	7 cut(s)	211, 264, 348, 406, 426, 675, 823
SsiI	CCGC	3 cut(s)	269, 561, 774
SspMI	CTAG	4 cut(s)	186, 204, 245, 471
StyD4I	CCNGG	3 cut(s)	72, 319, 803
StyI	CCWWGG	2 cut(s)	387, 585
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	714
TasI	AATT	7 cut(s)	211, 264, 348, 406, 426, 675, 823
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	2 cut(s)	591, 827
Tru9I	TTAA	2 cut(s)	591, 827
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	5 cut(s)	48, 54, 311, 471, 683
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	1 cut(s)	211
XspI	CTAG	4 cut(s)	186, 204, 245, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.