Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013306

Physical Location & Seq

Genomic Coordinates Reverse (-)

21301397 .. 21303230

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTTGACTTTGTACGGTCAAGAAAGGTCACCGGAGAACTCCACCACAAGTACGACCGATGCTTCCGATCGCCGGGATGAGACGCCGTCGTCGGAGATAGTCGTGAGAGATATTCACGCGATGACGACGACGACAGAGCTTACTCGGCCACAACAAAGGGGATCAGGAGGAGGATACTTGTCTCCGTCGAGGTCTATTGCTTTTAGCGACGGAACTACTTCTTCCGGTGAGAATTTCACCACCGTGAGCAGAGAGTTCAACGCTCTAGTCATCGCCGGATCTTCCATGGACAACAACAGTAACGGAACTAACCAATCAGGTGGTCATCGTGACGTCATACGTGATGAAAGAAACGAGCTGACTAGGATCGGCGAAAACGATGACGTTGGTGATCATGGTCAGGTGCCTGAGGAGGATTCAAATCCATGGGCGATTGTACCGGACGATTACAACAACCGGGACGGTTCAGAGAATAATATTGTGTTGGCGTCATCAGGTGGTCAGAACCGGATGGTGACGACTGCTTCGGTGCAGAGGGTGAAGAGAGAAGAGGTGGAAGCAAAGATAACGGCGTGGCAAACGGCGAAGGTGGCTAAGATTAATAATAGGTTTAAGAGACAAGACGCCGTTATTAACGGTTGGTTGAATGAGCAGGTTCATAGAGCTAACTCTTGGATGAAGAAAATCGAGAGGAAACTGGAAGATAGGAGAGCGAAGGCGATGGAGAAAACACAAAACAAAGTGGCAAAAGCTCAGAGGAAGGCGGAGGAGAGGAGAGCCACGGCGGAAGGTAAACGAGGGACGGAGGTTGCGAGGGTTCTTGAAGTTGCTAATCTCATGAGAGCCGTTGGACGACCTCCGGCCAAACGATCATTCTTCTCTCTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0016020 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0033993 GO:0042221 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0097305 GO:0097306 GO:1900457 GO:1900458 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

296

Amino Acids

32.87

Weight (kDa)

9.09

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_C	PF03763	183 - 288	1.3e-29	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41870 AT3G57540
fragaria_vesca	FvH4_6g23510
malus_domestica	MD12G1072300.v1.1 MD14G1069500.v1.1
prunus_persica	Prupe.7G064800_v2.0.a1
pyrus_communis	pycom12g06070 pycom14g05760
rosa_chinensis	RchiOBHm_Chr3g0481501
rosa_laevigata	RLG00000023391
rosa_multiflora	Rmu_sc0010846.1_g000007
rosa_roxburghii	Rroxscaffold_6G00400380
rosa_rugosa	Rorug03G0192300
rosa_samantha	Rh3AG243500 Rh3BG278400 Rh3CG273600 Rh3DG270400
rosa_wichuraiana	Rw3G021750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	88
AatII	GACGTC	1 cut(s)	336
Acc36I	ACCTGC	1 cut(s)	643
AccB1I	GGYRCC	1 cut(s)	403
AccII	CGCG	1 cut(s)	119
AciI	CCGC	2 cut(s)	764, 785
AclWI	GGATC	3 cut(s)	169, 286, 374
AcoI	YGGCCR	2 cut(s)	146, 861
AcsI	RAATTY	1 cut(s)	232
AcyI	GRCGYC	4 cut(s)	83, 333, 488, 624
AfaI	GTAC	3 cut(s)	14, 52, 438
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	4 cut(s)	259, 420, 646, 824
AjuI	GAANNNNNNNTTGG	2 cut(s)	857, 889
AleI	CACNNNNGTG	1 cut(s)	242
AluBI	AGCT	4 cut(s)	139, 358, 665, 752
AluI	AGCT	4 cut(s)	139, 358, 665, 752
Alw26I	GTCTC	3 cut(s)	74, 186, 610
AlwI	GGATC	3 cut(s)	169, 286, 374
AoxI	GGCC	2 cut(s)	146, 861
ApoI	RAATTY	1 cut(s)	232
ArsI	GACNNNNNNTTYG	2 cut(s)	508, 540
AseI	ATTAAT	1 cut(s)	600
Asp700I	GAANNNNTTC	1 cut(s)	217
AsuC2I	CCSGG	2 cut(s)	74, 458
AsuHPI	GGTGA	6 cut(s)	21, 229, 239, 401, 526, 550
AxyI	CCTNAGG	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	403
BccI	CCATC	2 cut(s)	505, 715
BceAI	ACGGC	6 cut(s)	70, 585, 597, 611, 798, 830
BciVI	GTATCC	1 cut(s)	167
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	2 cut(s)	74, 458
BcoDI	GTCTC	3 cut(s)	74, 186, 610
BfaI	CTAG	3 cut(s)	266, 363, 889
BfuAI	ACCTGC	1 cut(s)	643
BfuI	GTATCC	1 cut(s)	167
Bme1390I	CCNGG	2 cut(s)	74, 458
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	2 cut(s)	74, 458
BmsI	GCATC	1 cut(s)	49
BpuMI	CCSGG	2 cut(s)	74, 458
BsaAI	YACGTR	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	420
BsaHI	GRCGYC	4 cut(s)	83, 333, 488, 624
BsaJI	CCNNGG	3 cut(s)	285, 425, 780
BsaWI	WCCGGW	4 cut(s)	31, 224, 439, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	702
Bse21I	CCTNAGG	1 cut(s)	408
Bse8I	GATNNNNATC	1 cut(s)	420
BseDI	CCNNGG	3 cut(s)	285, 425, 780
BseGI	GGATG	3 cut(s)	82, 516, 681
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	399, 767
BseNI	ACTGG	1 cut(s)	702
BseRI	GAGGAG	4 cut(s)	183, 425, 782, 787
BsgI	GTGCAG	1 cut(s)	551
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	2 cut(s)	57, 70
BshFI	GGCC	2 cut(s)	148, 863
BshNI	GGYRCC	1 cut(s)	403
BsiEI	CGRYCG	2 cut(s)	57, 70
BsiSI	CCGG	8 cut(s)	32, 73, 225, 276, 440, 457, 508, 860
BslFI	GGGAC	2 cut(s)	473, 814
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	3 cut(s)	74, 186, 610
BsmBI	CGTCTC	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	473, 814
BsnI	GGCC	2 cut(s)	148, 863
Bsp143I	GATC	6 cut(s)	67, 161, 278, 366, 391, 869
Bsp19I	CCATGG	2 cut(s)	285, 425
BspACI	CCGC	2 cut(s)	764, 785
BspANI	GGCC	2 cut(s)	148, 863
BspCNI	CTCAG	2 cut(s)	400, 766
BspFNI	CGCG	1 cut(s)	119
BspHI	TCATGA	1 cut(s)	837
BspLI	GGNNCC	1 cut(s)	405
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	3 cut(s)	169, 286, 374
BspT107I	GGYRCC	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	702
BssECI	CCNNGG	3 cut(s)	285, 425, 780
BssMI	GATC	6 cut(s)	67, 161, 278, 366, 391, 869
BssNI	GRCGYC	4 cut(s)	83, 333, 488, 624
BssT1I	CCWWGG	2 cut(s)	285, 425
Bst4CI	ACNGT	5 cut(s)	17, 244, 299, 464, 638
Bst6I	CTCTTC	2 cut(s)	536, 543
BstACI	GRCGYC	4 cut(s)	83, 333, 488, 624
BstBAI	YACGTR	1 cut(s)	341
BstDEI	CTNAG	3 cut(s)	408, 594, 753
BstDSI	CCRYGG	3 cut(s)	285, 425, 780
BstEII	GGTNACC	1 cut(s)	27
BstF5I	GGATG	3 cut(s)	82, 516, 681
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	6 cut(s)	70, 164, 281, 369, 394, 872
BstMAI	GTCTC	3 cut(s)	74, 186, 610
BstMBI	GATC	6 cut(s)	67, 161, 278, 366, 391, 869
BstMCI	CGRYCG	2 cut(s)	57, 70
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 590
BstPI	GGTNACC	1 cut(s)	27
BstSCI	CCNGG	2 cut(s)	72, 456
BstUI	CGCG	1 cut(s)	119
BstX2I	RGATCY	1 cut(s)	278
BstXI	CCANNNNNNTGG	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	278
Bsu36I	CCTNAGG	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	167
BsuRI	GGCC	2 cut(s)	148, 863
BtgI	CCRYGG	3 cut(s)	285, 425, 780
BtgZI	GCGATG	3 cut(s)	134, 256, 734
BtsCI	GGATG	3 cut(s)	82, 516, 681
BveI	ACCTGC	1 cut(s)	643
CciI	TCATGA	1 cut(s)	837
CseI	GACGC	3 cut(s)	91, 477, 632
Csp6I	GTAC	3 cut(s)	13, 51, 437
CviAII	CATG	4 cut(s)	286, 395, 426, 838
CviJI	RGCY	9 cut(s)	139, 148, 358, 593, 665, 752, 779, 845, 863
CviKI_1	RGCY	9 cut(s)	139, 148, 358, 593, 665, 752, 779, 845, 863
CviQI	GTAC	3 cut(s)	13, 51, 437
DdeI	CTNAG	3 cut(s)	408, 594, 753
DpnI	GATC	6 cut(s)	69, 163, 280, 368, 393, 871
DpnII	GATC	6 cut(s)	67, 161, 278, 366, 391, 869
DrdI	GACNNNNNNGTC	1 cut(s)	88
DseDI	GACNNNNNNGTC	1 cut(s)	88
EaeI	YGGCCR	2 cut(s)	146, 861
Eam1104I	CTCTTC	2 cut(s)	536, 543
EarI	CTCTTC	2 cut(s)	536, 543
EciI	GGCGGA	2 cut(s)	779, 800
Eco130I	CCWWGG	2 cut(s)	285, 425
Eco81I	CCTNAGG	1 cut(s)	408
Eco91I	GGTNACC	1 cut(s)	27
EcoO65I	GGTNACC	1 cut(s)	27
EcoT14I	CCWWGG	2 cut(s)	285, 425
ErhI	CCWWGG	2 cut(s)	285, 425
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	4 cut(s)	289, 398, 429, 841
FaiI	YATR	6 cut(s)	287, 338, 396, 427, 660, 839
FaqI	GGGAC	2 cut(s)	473, 814
FatI	CATG	4 cut(s)	285, 394, 425, 837
FbaI	TGATCA	1 cut(s)	391
FokI	GGATG	3 cut(s)	89, 523, 688
FspBI	CTAG	3 cut(s)	266, 363, 889
HaeIII	GGCC	2 cut(s)	148, 863
HapII	CCGG	8 cut(s)	32, 73, 225, 276, 440, 457, 508, 860
HgaI	GACGC	3 cut(s)	91, 477, 632
Hin1I	GRCGYC	4 cut(s)	83, 333, 488, 624
Hin1II	CATG	4 cut(s)	289, 398, 429, 841
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	416
HpaII	CCGG	8 cut(s)	32, 73, 225, 276, 440, 457, 508, 860
HphI	GGTGA	6 cut(s)	21, 229, 239, 401, 526, 550
Hpy166II	GTNNAC	2 cut(s)	6, 794
Hpy188I	TCNGA	5 cut(s)	67, 94, 469, 504, 756
Hpy188III	TCNNGA	7 cut(s)	20, 103, 165, 329, 688, 821, 838
Hpy8I	GTNNAC	2 cut(s)	6, 794
Hpy99I	CGWCG	6 cut(s)	91, 94, 130, 133, 190, 212
HpyAV	CCTTC	4 cut(s)	580, 709, 754, 782
HpyCH4III	ACNGT	5 cut(s)	17, 244, 299, 464, 638
HpyCH4IV	ACGT	3 cut(s)	333, 340, 384
HpyCH4V	TGCA	1 cut(s)	532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 590
HpyF3I	CTNAG	3 cut(s)	408, 594, 753
HpySE526I	ACGT	3 cut(s)	333, 340, 384
Hsp92I	GRCGYC	4 cut(s)	83, 333, 488, 624
Hsp92II	CATG	4 cut(s)	289, 398, 429, 841
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	6 cut(s)	67, 161, 278, 366, 391, 869
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	3 cut(s)	266, 363, 889
MaeII	ACGT	3 cut(s)	333, 340, 384
MaeIII	GTNAC	4 cut(s)	27, 299, 329, 514
MalI	GATC	6 cut(s)	69, 163, 280, 368, 393, 871
MboI	GATC	6 cut(s)	67, 161, 278, 366, 391, 869
MboII	GAAGA	7 cut(s)	213, 273, 553, 560, 691, 713, 868
MflI	RGATCY	1 cut(s)	278
MluCI	AATT	1 cut(s)	232
MmeI	TCCRAC	2 cut(s)	72, 829
MroXI	GAANNNNTTC	1 cut(s)	217
MseI	TTAA	3 cut(s)	600, 612, 633
MslI	CAYNNNNRTG	1 cut(s)	242
MspI	CCGG	8 cut(s)	32, 73, 225, 276, 440, 457, 508, 860
MspR9I	CCNGG	2 cut(s)	74, 458
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	145, 590
NciI	CCSGG	2 cut(s)	74, 458
NcoI	CCATGG	2 cut(s)	285, 425
NdeII	GATC	6 cut(s)	67, 161, 278, 366, 391, 869
NlaIII	CATG	4 cut(s)	289, 398, 429, 841
NlaIV	GGNNCC	1 cut(s)	405
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	3 cut(s)	27, 329, 514
OliI	CACNNNNGTG	1 cut(s)	242
PagI	TCATGA	1 cut(s)	837
PcsI	WCGNNNNNNNCGW	2 cut(s)	375, 809
PdmI	GAANNNNTTC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	416
PflFI	GACNNNGTC	1 cut(s)	85
Ple19I	CGATCG	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	341
PshBI	ATTAAT	1 cut(s)	600
PspEI	GGTNACC	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	278
PsyI	GACNNNGTC	1 cut(s)	85
PvuI	CGATCG	1 cut(s)	70
RsaI	GTAC	3 cut(s)	14, 52, 438
RsaNI	GTAC	3 cut(s)	13, 51, 437
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	3 cut(s)	600, 612, 633
Sau3AI	GATC	6 cut(s)	67, 161, 278, 366, 391, 869
ScrFI	CCNGG	2 cut(s)	74, 458
SfaNI	GCATC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	1 cut(s)	232
SsiI	CCGC	2 cut(s)	764, 785
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	3 cut(s)	266, 363, 889
StyD4I	CCNGG	2 cut(s)	72, 456
StyI	CCWWGG	2 cut(s)	285, 425
TaaI	ACNGT	5 cut(s)	17, 244, 299, 464, 638
TaiI	ACGT	3 cut(s)	336, 343, 387
TaqI	TCGA	2 cut(s)	188, 687
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	3 cut(s)	600, 612, 633
Tru9I	TTAA	3 cut(s)	600, 612, 633
TseFI	GTSAC	3 cut(s)	27, 329, 514
Tsp45I	GTSAC	3 cut(s)	27, 329, 514
TspDTI	ATGAA	3 cut(s)	360, 647, 692
TspGWI	ACGGA	4 cut(s)	174, 225, 318, 818
Tth111I	GACNNNGTC	1 cut(s)	85
VspI	ATTAAT	1 cut(s)	600
XapI	RAATTY	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	217
XspI	CTAG	3 cut(s)	266, 363, 889
ZraI	GACGTC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.