Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013306

Physical Location & Seq

Genomic Coordinates Forward (+)

8289912 .. 8292582

Gene Structure 2671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1072300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAATGATCAAAGGGCTGGGACTAGCCAAGCAGCACAAGATCATGATGATCATGGTGATGATCATGGTGAAGATCAAGAGCAGATCATCAGGGACATCCATGCCTTGACACCGCCTCGTCCGCCGCCTCCCGGCAACCACGGCCGTAGAAGAGAAGCTTGGGAAACTGGTAGCCATAGATCATCATCTTTGTCCATTGCCAGCACTGAGTTAGGAACAGCTTCAACTGAGAACTTCACTACCATGAGTAGAGAATTCAGTGCTCTTGTGGTTGCAGGGTCAGCAATCGGGACTAATAATAGTACCACCAATGATAGTGACCATGGTACTAATAACAATAATTTGGGTAGGATCGGAGAGGAGGACAATAATATGCCTGAGGATGAGCTGGAGACCAACCCTTTGGCTATAGTCCCGGATAATTACAACCCTGTGGACCCAGTTCCTTATTCTCCAAGGAATAGTGAGGCTAATAATTATAGAATTGGCTCTTCATCAAGCACGGTTAGGACTCGGGATCACCAAGGCGGCAGCGGCGGCGATCAGACGGTGTCAGTGCATCGGGTGAAGAAGGAAGAGGTTGAAACAAAGATATCGGCCTGGCAAAACAACAAGATTGCCAAGCTTAATAACAGGTTTAAGAGGGAGGATGCTATTATTAATGGGTGGGAAAGTGAGCAGGTACAGAAAGCTTCTTCATGGATGAAGAAAGTAGAGAGGAAGTTGGAGGAGAAAAGAGCAAGAGCCCTAGAGAAGATGCAAAATGATATAGCCAAAGCACGTAGGAAAGCAGAGGAGAGGAAGGCATCGGCTGAGGCTAAAAGGGGAACAAAAGTGGCTAGGGTTCTTGAAATTGCCAATCTAATGAGAGCTGTTGGAAGAGCACCTGCCAAAAAATCAATCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0016020 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0033993 GO:0042221 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0097305 GO:0097306 GO:1900457 GO:1900458 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

303

Amino Acids

33.45

Weight (kDa)

7.16

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_C	PF03763	192 - 298	4.8e-30	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41870 AT3G57540
fragaria_vesca	FvH4_6g23510
malus_domestica	MD12G1072300.v1.1 MD14G1069500.v1.1
prunus_persica	Prupe.7G064800_v2.0.a1
pyrus_communis	pycom12g06070 pycom14g05760
rosa_chinensis	RchiOBHm_Chr3g0481501
rosa_laevigata	RLG00000023391
rosa_multiflora	Rmu_sc0010846.1_g000007
rosa_roxburghii	Rroxscaffold_6G00400380
rosa_rugosa	Rorug03G0192300
rosa_samantha	Rh3AG243500 Rh3BG278400 Rh3CG273600 Rh3DG270400
rosa_wichuraiana	Rw3G021750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	895
Acc36I	ACCTGC	2 cut(s)	670, 895
AciI	CCGC	6 cut(s)	113, 122, 125, 528, 534, 537
AclWI	GGATC	2 cut(s)	359, 525
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	254
AfaI	GTAC	3 cut(s)	304, 328, 684
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	3 cut(s)	225, 584, 851
AjnI	CCWGG	1 cut(s)	599
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	6 cut(s)	158, 221, 388, 625, 692, 872
AluI	AGCT	6 cut(s)	158, 221, 388, 625, 692, 872
Alw21I	GWGCWC	2 cut(s)	265, 886
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	2 cut(s)	359, 525
Ama87I	CYCGRG	1 cut(s)	513
AoxI	GGCC	2 cut(s)	142, 597
ApeKI	GCWGC	2 cut(s)	32, 531
ApoI	RAATTY	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	385, 417
AseI	ATTAAT	1 cut(s)	660
Asp700I	GAANNNNTTC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	436
AsuC2I	CCSGG	2 cut(s)	132, 416
AsuHPI	GGTGA	4 cut(s)	68, 80, 512, 577
AvaI	CYCGRG	1 cut(s)	513
AvaII	GGWCC	1 cut(s)	436
AxyI	CCTNAGG	1 cut(s)	378
BanII	GRGCYC	1 cut(s)	748
Bbv12I	GWGCWC	2 cut(s)	265, 886
BbvCI	CCTCAGC	1 cut(s)	813
BbvI	GCAGC	2 cut(s)	44, 543
BceAI	ACGGC	2 cut(s)	129, 157
BciT130I	CCWGG	1 cut(s)	601
BclI	TGATCA	3 cut(s)	7, 49, 61
BcnI	CCSGG	2 cut(s)	132, 416
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	4 cut(s)	24, 749, 840, 907
BfmI	CTRYAG	1 cut(s)	408
BfuAI	ACCTGC	2 cut(s)	670, 895
BisI	GCNGC	6 cut(s)	33, 125, 529, 532, 535, 538
BlsI	GCNGC	6 cut(s)	34, 126, 530, 533, 536, 539
Bme1390I	CCNGG	3 cut(s)	132, 416, 601
Bme18I	GGWCC	1 cut(s)	436
BmeT110I	CYCGRG	1 cut(s)	513
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	3 cut(s)	132, 416, 601
BmrI	ACTGGG	1 cut(s)	434
BmsI	GCATC	4 cut(s)	568, 640, 747, 815
BmuI	ACTGGG	1 cut(s)	434
BpmI	CTGGAG	1 cut(s)	410
Bpu10I	CCTNAGC	1 cut(s)	813
BpuMI	CCSGG	2 cut(s)	132, 416
BsaAI	YACGTR	1 cut(s)	782
BsaBI	GATNNNNATC	1 cut(s)	184
BsaI	GGTCTC	1 cut(s)	386
BsaJI	CCNNGG	4 cut(s)	139, 322, 455, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	2 cut(s)	172, 440
Bse21I	CCTNAGG	1 cut(s)	378
Bse3DI	GCAATG	1 cut(s)	195
Bse8I	GATNNNNATC	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	601
BseDI	CCNNGG	4 cut(s)	139, 322, 455, 523
BseGI	GGATG	4 cut(s)	96, 388, 655, 708
BseJI	GATNNNNATC	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	4 cut(s)	198, 219, 369, 804
BseNI	ACTGG	2 cut(s)	172, 440
BseRI	GAGGAG	3 cut(s)	374, 743, 809
BseX3I	CGGCCG	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	44, 543
BseYI	CCCAGC	1 cut(s)	17
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	144, 599
BsiEI	CGRYCG	1 cut(s)	145
BsiHKAI	GWGCWC	2 cut(s)	265, 886
BsiHKCI	CYCGRG	1 cut(s)	513
BsiSI	CCGG	2 cut(s)	132, 416
BslFI	GGGAC	4 cut(s)	34, 107, 304, 398
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	386
BsmFI	GGGAC	4 cut(s)	34, 107, 304, 398
BsnI	GGCC	2 cut(s)	144, 599
Bso31I	GGTCTC	1 cut(s)	386
BsoBI	CYCGRG	1 cut(s)	513
Bsp1286I	GDGCHC	3 cut(s)	265, 748, 886
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	6 cut(s)	113, 122, 125, 528, 534, 537
BspANI	GGCC	2 cut(s)	144, 599
BspCNI	CTCAG	4 cut(s)	199, 220, 370, 805
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	438
BspMI	ACCTGC	2 cut(s)	670, 895
BspPI	GGATC	2 cut(s)	359, 525
BspQI	GCTCTTC	2 cut(s)	496, 874
BspTNI	GGTCTC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	172, 440
BssECI	CCNNGG	4 cut(s)	139, 322, 455, 523
BssT1I	CCWWGG	3 cut(s)	322, 455, 523
Bst2UI	CCWGG	1 cut(s)	601
Bst4CI	ACNGT	2 cut(s)	505, 550
Bst6I	CTCTTC	4 cut(s)	145, 496, 570, 874
BstBAI	YACGTR	1 cut(s)	782
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	4 cut(s)	207, 228, 378, 813
BstDSI	CCRYGG	2 cut(s)	139, 322
BstF5I	GGATG	4 cut(s)	96, 388, 655, 708
BstMAI	GTCTC	1 cut(s)	386
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 141, 281, 534, 537
BstNI	CCWGG	1 cut(s)	601
BstSCI	CCNGG	3 cut(s)	130, 414, 599
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	2 cut(s)	44, 543
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstZI	CGGCCG	1 cut(s)	142
Bsu36I	CCTNAGG	1 cut(s)	378
BsuRI	GGCC	2 cut(s)	144, 599
BtgI	CCRYGG	2 cut(s)	139, 322
BtsCI	GGATG	4 cut(s)	96, 388, 655, 708
BtsIMutI	CAGTG	3 cut(s)	204, 265, 561
BveI	ACCTGC	2 cut(s)	670, 895
Cac8I	GCNNGC	1 cut(s)	202
CciI	TCATGA	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	436
Csp6I	GTAC	3 cut(s)	303, 327, 683
CviAII	CATG	7 cut(s)	44, 53, 65, 101, 244, 323, 699
CviQI	GTAC	3 cut(s)	303, 327, 683
DdeI	CTNAG	4 cut(s)	207, 228, 378, 813
EaeI	YGGCCR	1 cut(s)	142
EagI	CGGCCG	1 cut(s)	142
Eam1104I	CTCTTC	4 cut(s)	145, 496, 570, 874
EarI	CTCTTC	4 cut(s)	145, 496, 570, 874
EciI	GGCGGA	1 cut(s)	111
EclXI	CGGCCG	1 cut(s)	142
Eco130I	CCWWGG	3 cut(s)	322, 455, 523
Eco24I	GRGCYC	1 cut(s)	748
Eco31I	GGTCTC	1 cut(s)	386
Eco32I	GATATC	1 cut(s)	594
Eco47I	GGWCC	1 cut(s)	436
Eco52I	CGGCCG	1 cut(s)	142
Eco81I	CCTNAGG	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	513
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	599
EcoRV	GATATC	1 cut(s)	594
EcoT14I	CCWWGG	3 cut(s)	322, 455, 523
EcoT38I	GRGCYC	1 cut(s)	748
ErhI	CCWWGG	3 cut(s)	322, 455, 523
FaeI	CATG	7 cut(s)	47, 56, 68, 104, 247, 326, 702
FalI	AAGNNNNNCTT	2 cut(s)	142, 174
FaqI	GGGAC	4 cut(s)	34, 107, 304, 398
FatI	CATG	7 cut(s)	43, 52, 64, 100, 243, 322, 698
FbaI	TGATCA	3 cut(s)	7, 49, 61
Fnu4HI	GCNGC	6 cut(s)	33, 125, 529, 532, 535, 538
FokI	GGATG	4 cut(s)	83, 395, 662, 715
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	6 cut(s)	33, 125, 529, 532, 535, 538
FspBI	CTAG	4 cut(s)	24, 749, 840, 907
GluI	GCNGC	6 cut(s)	33, 125, 529, 532, 535, 538
GsaI	CCCAGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	2 cut(s)	144, 599
HapII	CCGG	2 cut(s)	132, 416
Hin1II	CATG	7 cut(s)	47, 56, 68, 104, 247, 326, 702
HindIII	AAGCTT	3 cut(s)	156, 623, 690
HinfI	GANTC	1 cut(s)	511
HpaII	CCGG	2 cut(s)	132, 416
HphI	GGTGA	4 cut(s)	68, 80, 512, 577
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	2 cut(s)	356, 546
Hpy188III	TCNNGA	5 cut(s)	44, 77, 289, 515, 848
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	2 cut(s)	565, 796
HpyCH4III	ACNGT	2 cut(s)	505, 550
HpyCH4IV	ACGT	1 cut(s)	781
HpyCH4V	TGCA	3 cut(s)	275, 559, 760
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 141, 281, 534, 537
HpyF3I	CTNAG	4 cut(s)	207, 228, 378, 813
HpySE526I	ACGT	1 cut(s)	781
Hsp92II	CATG	7 cut(s)	47, 56, 68, 104, 247, 326, 702
Ksp22I	TGATCA	3 cut(s)	7, 49, 61
LguI	GCTCTTC	2 cut(s)	496, 874
Lsp1109I	GCAGC	2 cut(s)	44, 543
LweI	GCATC	4 cut(s)	568, 640, 747, 815
MaeI	CTAG	4 cut(s)	24, 749, 840, 907
MaeII	ACGT	1 cut(s)	781
MaeIII	GTNAC	1 cut(s)	317
MhlI	GDGCHC	3 cut(s)	265, 748, 886
MluCI	AATT	6 cut(s)	254, 340, 421, 475, 483, 852
MlyI	GAGTC	1 cut(s)	505
MmeI	TCCRAC	2 cut(s)	705, 856
MroXI	GAANNNNTTC	1 cut(s)	220
MseI	TTAA	3 cut(s)	627, 639, 660
MslI	CAYNNNNRTG	2 cut(s)	57, 242
MspA1I	CMGCKG	1 cut(s)	534
MspI	CCGG	2 cut(s)	132, 416
MspR9I	CCNGG	3 cut(s)	132, 416, 601
MvaI	CCWGG	1 cut(s)	601
MwoI	GCNNNNNNNGC	5 cut(s)	121, 141, 281, 534, 537
NciI	CCSGG	2 cut(s)	132, 416
NcoI	CCATGG	1 cut(s)	322
NlaIII	CATG	7 cut(s)	47, 56, 68, 104, 247, 326, 702
NlaIV	GGNNCC	1 cut(s)	438
NmuCI	GTSAC	1 cut(s)	317
PagI	TCATGA	1 cut(s)	43
PaqCI	CACCTGC	1 cut(s)	895
PciSI	GCTCTTC	2 cut(s)	496, 874
PdmI	GAANNNNTTC	1 cut(s)	220
PflFI	GACNNNGTC	1 cut(s)	550
PfoI	TCCNGGA	1 cut(s)	414
PkrI	GCNGC	6 cut(s)	34, 126, 530, 533, 536, 539
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
Ppu21I	YACGTR	1 cut(s)	782
PshBI	ATTAAT	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	599
PspFI	CCCAGC	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	599
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	1 cut(s)	436
PsyI	GACNNNGTC	1 cut(s)	550
RsaI	GTAC	3 cut(s)	304, 328, 684
RsaNI	GTAC	3 cut(s)	303, 327, 683
RseI	CAYNNNNRTG	2 cut(s)	57, 242
SapI	GCTCTTC	2 cut(s)	496, 874
SaqAI	TTAA	3 cut(s)	627, 639, 660
SatI	GCNGC	6 cut(s)	33, 125, 529, 532, 535, 538
Sau96I	GGNCC	1 cut(s)	436
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	3 cut(s)	132, 416, 601
SduI	GDGCHC	3 cut(s)	265, 748, 886
SfaNI	GCATC	4 cut(s)	568, 640, 747, 815
SfcI	CTRYAG	1 cut(s)	408
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	2 cut(s)	57, 242
Sse9I	AATT	6 cut(s)	254, 340, 421, 475, 483, 852
SsiI	CCGC	6 cut(s)	113, 122, 125, 528, 534, 537
SspMI	CTAG	4 cut(s)	24, 749, 840, 907
StyD4I	CCNGG	3 cut(s)	130, 414, 599
StyI	CCWWGG	3 cut(s)	322, 455, 523
TaaI	ACNGT	2 cut(s)	505, 550
TaiI	ACGT	1 cut(s)	784
TasI	AATT	6 cut(s)	254, 340, 421, 475, 483, 852
TauI	GCSGC	4 cut(s)	127, 531, 537, 540
Tru1I	TTAA	3 cut(s)	627, 639, 660
Tru9I	TTAA	3 cut(s)	627, 639, 660
TscAI	CASTG	3 cut(s)	211, 265, 561
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	2 cut(s)	32, 531
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	4 cut(s)	17, 483, 687, 719
TspRI	CASTG	3 cut(s)	211, 265, 561
Tth111I	GACNNNGTC	1 cut(s)	550
VpaK11BI	GGWCC	1 cut(s)	436
VspI	ATTAAT	1 cut(s)	660
XapI	RAATTY	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	220
XspI	CTAG	4 cut(s)	24, 749, 840, 907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.