Rh3CG273600

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0013306
Physical Location & Seq
Forward (+)
27149933 .. 27151572
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG273600.1

Sequence Viewer

Length: 870 bp
ATGTTGAATGATCAAAGGGTTGGCACCAGCCGTGAACATGAAGATGATGATCACGGTGACGATGAGATAGTCCGGGATATCCACGCCTTGACACCACCTCATCCTGCACAGGCTGCTAATCGTGGTGGCCGTCAAAGAGAGGCTTGGGAAACTGGTAGTCAGAGATCATCATCTCTGTCCGTGGCTAGTATTGAAGGTGCTTCTAGTGAGAATTTTACTTCCATGAGTAGAGAGTTCAGTGCTCTAGTGGTTGCAGGGTCAACAATTCCGCATAGTGGTAGTAACAATGATATGAATGATAGTGCTGTAAATAATCCTGGAAACAACAACTTGGGATTGGGTAGAATTGGAGAGGAGGACAATATGCCGGAGGAGACCAATCCCTTGGCTATAGTAACAGATAATTATCACTCTTCGGACCCAATTGCTTCTCCAAGAAGTATCGGGGCTAACAATAATAACATGGCTAGCTCTTCTTCATCAAGCTTGATTGGCACTAATCAAGGTGAGATTTCTGTGCATATGGTCAAGAAGGAAGAGGTGGAATCAAAGATATCCGCGTGGCAGAACGCAAAGATTGCCAAGGTTAACAACAGGTTCAAGAGGGAGGATGCTGTTATAAATGGGTGGGAAAGTGAGCAGGTGCAGAAAGCTTCTACATGGATGAAGAAAATTGAGAGGAAGTTGGAAGAGAAAAGAGCAAGGGCCTTCGAGAAGATGCAAAATGATATAGCCAAAGCTCACAGAAAAGCAGAGGAGAGGAAGGCATCCGCTGAGGCTAAGAGAGGAACAAAAGTGGCCAGGGTTCTTGAAATAGCCAATTTAATGAGAGCTGTTGGAAGAGCACCTGCCAAAAAGTCCTTCTTCTAA

Protein Analysis

289

Amino Acids

31.7

Weight (kDa)

6.74

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 179 - 285 2.6e-31 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41870 AT3G57540
fragaria_vesca FvH4_6g23510
malus_domestica MD12G1072300.v1.1 MD14G1069500.v1.1
prunus_persica Prupe.7G064800_v2.0.a1
pyrus_communis pycom12g06070 pycom14g05760
rosa_chinensis RchiOBHm_Chr3g0481501
rosa_laevigata RLG00000023391
rosa_multiflora Rmu_sc0010846.1_g000007
rosa_roxburghii Rroxscaffold_6G00400380
rosa_rugosa Rorug03G0192300
rosa_samantha Rh3AG243500 Rh3BG278400 Rh3CG273600 Rh3DG270400
rosa_wichuraiana Rw3G021750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 620
AarI CACCTGC 2 cut(s) 631, 856
Acc36I ACCTGC 2 cut(s) 631, 856
AccB1I GGYRCC 1 cut(s) 23
AccII CGCG 1 cut(s) 560
AciI CCGC 3 cut(s) 269, 558, 771
AcoI YGGCCR 2 cut(s) 127, 798
AcsI RAATTY 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 4 cut(s) 7, 194, 601, 812
AjnI CCWGG 2 cut(s) 316, 800
AjuI GAANNNNNNNTTGG 1 cut(s) 845
AluBI AGCT 5 cut(s) 471, 486, 653, 740, 833
AluI AGCT 5 cut(s) 471, 486, 653, 740, 833
Alw21I GWGCWC 2 cut(s) 244, 847
Alw26I GTCTC 1 cut(s) 368
AoxI GGCC 3 cut(s) 127, 705, 798
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 211
AspS9I GGNCC 2 cut(s) 418, 705
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 68, 518
AsuNHI GCTAGC 1 cut(s) 467
AvaII GGWCC 1 cut(s) 418
BalI TGGCCA 1 cut(s) 800
BanI GGYRCC 1 cut(s) 23
Bbv12I GWGCWC 2 cut(s) 244, 847
BbvCI CCTCAGC 1 cut(s) 774
BbvI GCAGC 1 cut(s) 100
BceAI ACGGC 2 cut(s) 15, 114
BciT130I CCWGG 2 cut(s) 318, 802
BclI TGATCA 2 cut(s) 10, 49
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 368
BfaI CTAG 4 cut(s) 186, 204, 245, 468
BfmI CTRYAG 1 cut(s) 390
BfuAI ACCTGC 2 cut(s) 631, 856
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 3 cut(s) 74, 318, 802
Bme18I GGWCC 1 cut(s) 418
BmgT120I GGNCC 2 cut(s) 418, 705
BmiI GGNNCC 2 cut(s) 25, 420
BmrFI CCNGG 3 cut(s) 74, 318, 802
BmsI GCATC 3 cut(s) 601, 708, 776
BmtI GCTAGC 1 cut(s) 471
Bpu10I CCTNAGC 1 cut(s) 774
BpuMI CCSGG 1 cut(s) 74
BsaBI GATNNNNATC 3 cut(s) 48, 169, 405
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 4 cut(s) 180, 384, 582, 801
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 157
Bse8I GATNNNNATC 3 cut(s) 48, 169, 405
BseBI CCWGG 2 cut(s) 318, 802
BseDI CCNNGG 4 cut(s) 180, 384, 582, 801
BseGI GGATG 4 cut(s) 100, 616, 669, 767
BseJI GATNNNNATC 3 cut(s) 48, 169, 405
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 765
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 3 cut(s) 368, 386, 770
BseXI GCAGC 1 cut(s) 100
BsgI GTGCAG 2 cut(s) 90, 665
Bsh1236I CGCG 1 cut(s) 560
BshFI GGCC 3 cut(s) 129, 707, 800
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 244, 847
BsiSI CCGG 2 cut(s) 73, 368
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 368
BsnI GGCC 3 cut(s) 129, 707, 800
Bso31I GGTCTC 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 244, 847
Bsp143I GATC 3 cut(s) 10, 49, 164
BspACI CCGC 3 cut(s) 269, 558, 771
BspANI GGCC 3 cut(s) 129, 707, 800
BspCNI CTCAG 1 cut(s) 766
BspFNI CGCG 1 cut(s) 560
BspLI GGNNCC 2 cut(s) 25, 420
BspMI ACCTGC 2 cut(s) 631, 856
BspOI GCTAGC 1 cut(s) 471
BspQI GCTCTTC 2 cut(s) 478, 835
BspT107I GGYRCC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 368
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 4 cut(s) 180, 384, 582, 801
BssMI GATC 3 cut(s) 10, 49, 164
BssT1I CCWWGG 2 cut(s) 384, 582
Bst2UI CCWGG 2 cut(s) 318, 802
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 5 cut(s) 418, 478, 531, 684, 835
BstAPI GCANNNNNTGC 2 cut(s) 113, 578
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 2 cut(s) 774, 780
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 4 cut(s) 100, 616, 669, 767
BstFNI CGCG 1 cut(s) 560
BstKTI GATC 3 cut(s) 13, 52, 167
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 3 cut(s) 10, 49, 164
BstMWI GCNNNNNNNGC 3 cut(s) 113, 492, 578
BstNI CCWGG 2 cut(s) 318, 802
BstSCI CCNGG 3 cut(s) 72, 316, 800
BstSFI CTRYAG 1 cut(s) 390
BstUI CGCG 1 cut(s) 560
BstV1I GCAGC 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 385
BsuRI GGCC 3 cut(s) 129, 707, 800
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 4 cut(s) 100, 616, 669, 767
BtsIMutI CAGTG 1 cut(s) 244
BveI ACCTGC 2 cut(s) 631, 856
Cac8I GCNNGC 1 cut(s) 469
Cfr13I GGNCC 2 cut(s) 418, 705
CviAII CATG 4 cut(s) 38, 223, 463, 660
DdeI CTNAG 2 cut(s) 774, 780
DpnI GATC 3 cut(s) 12, 51, 166
DpnII GATC 3 cut(s) 10, 49, 164
EaeI YGGCCR 2 cut(s) 127, 798
Eam1104I CTCTTC 5 cut(s) 418, 478, 531, 684, 835
EarI CTCTTC 5 cut(s) 418, 478, 531, 684, 835
Eco130I CCWWGG 2 cut(s) 384, 582
Eco31I GGTCTC 1 cut(s) 368
Eco32I GATATC 2 cut(s) 79, 555
Eco47I GGWCC 1 cut(s) 418
EcoO109I RGGNCCY 1 cut(s) 705
EcoRII CCWGG 2 cut(s) 316, 800
EcoRV GATATC 2 cut(s) 79, 555
EcoT14I CCWWGG 2 cut(s) 384, 582
ErhI CCWWGG 2 cut(s) 384, 582
FaeI CATG 4 cut(s) 41, 226, 466, 663
FalI AAGNNNNNCTT 3 cut(s) 127, 159, 848
FatI CATG 4 cut(s) 37, 222, 462, 659
FauNDI CATATG 1 cut(s) 522
FbaI TGATCA 2 cut(s) 10, 49
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 4 cut(s) 87, 623, 676, 754
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 4 cut(s) 186, 204, 245, 468
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 3 cut(s) 129, 707, 800
HapII CCGG 2 cut(s) 73, 368
Hin1II CATG 4 cut(s) 41, 226, 466, 663
HincII GTYRAC 2 cut(s) 261, 589
HindII GTYRAC 2 cut(s) 261, 589
HindIII AAGCTT 2 cut(s) 484, 651
HinfI GANTC 1 cut(s) 545
HpaI GTTAAC 1 cut(s) 589
HpaII CCGG 2 cut(s) 73, 368
HphI GGTGA 2 cut(s) 68, 518
Hpy166II GTNNAC 3 cut(s) 35, 261, 589
Hpy188I TCNGA 2 cut(s) 162, 418
Hpy188III TCNNGA 4 cut(s) 529, 601, 712, 809
Hpy8I GTNNAC 3 cut(s) 35, 261, 589
HpyAV CCTTC 4 cut(s) 188, 526, 718, 757
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 5 cut(s) 107, 254, 520, 646, 721
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 492, 578
HpyF3I CTNAG 2 cut(s) 774, 780
Hsp92II CATG 4 cut(s) 41, 226, 466, 663
Ksp22I TGATCA 2 cut(s) 10, 49
KspAI GTTAAC 1 cut(s) 589
Kzo9I GATC 3 cut(s) 10, 49, 164
LguI GCTCTTC 2 cut(s) 478, 835
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 3 cut(s) 601, 708, 776
MaeI CTAG 4 cut(s) 186, 204, 245, 468
MaeIII GTNAC 3 cut(s) 56, 281, 394
MalI GATC 3 cut(s) 12, 51, 166
MboI GATC 3 cut(s) 10, 49, 164
MfeI CAATTG 1 cut(s) 423
MhlI GDGCHC 2 cut(s) 244, 847
MlsI TGGCCA 1 cut(s) 800
MluCI AATT 7 cut(s) 211, 264, 345, 403, 423, 672, 820
MluNI TGGCCA 1 cut(s) 800
MmeI TCCRAC 2 cut(s) 666, 817
Mox20I TGGCCA 1 cut(s) 800
MscI TGGCCA 1 cut(s) 800
MseI TTAA 2 cut(s) 588, 824
MslI CAYNNNNRTG 1 cut(s) 42
Msp20I TGGCCA 1 cut(s) 800
MspA1I CMGCKG 1 cut(s) 773
MspI CCGG 2 cut(s) 73, 368
MspR9I CCNGG 3 cut(s) 74, 318, 802
MunI CAATTG 1 cut(s) 423
MvaI CCWGG 2 cut(s) 318, 802
MvnI CGCG 1 cut(s) 560
MwoI GCNNNNNNNGC 3 cut(s) 113, 492, 578
NciI CCSGG 1 cut(s) 74
NdeI CATATG 1 cut(s) 522
NdeII GATC 3 cut(s) 10, 49, 164
NheI GCTAGC 1 cut(s) 467
NlaIII CATG 4 cut(s) 41, 226, 466, 663
NlaIV GGNNCC 2 cut(s) 25, 420
NmuCI GTSAC 1 cut(s) 56
PaqCI CACCTGC 2 cut(s) 631, 856
PciSI GCTCTTC 2 cut(s) 478, 835
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PfeI GAWTC 1 cut(s) 545
PfoI TCCNGGA 2 cut(s) 72, 316
PkrI GCNGC 1 cut(s) 115
PsiI TTATAA 1 cut(s) 620
Psp6I CCWGG 2 cut(s) 316, 800
PspGI CCWGG 2 cut(s) 316, 800
PspN4I GGNNCC 2 cut(s) 25, 420
PspPI GGNCC 2 cut(s) 418, 705
RseI CAYNNNNRTG 1 cut(s) 42
SapI GCTCTTC 2 cut(s) 478, 835
SaqAI TTAA 2 cut(s) 588, 824
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 3 cut(s) 10, 49, 164
Sau96I GGNCC 2 cut(s) 418, 705
ScrFI CCNGG 3 cut(s) 74, 318, 802
SduI GDGCHC 2 cut(s) 244, 847
SfaNI GCATC 3 cut(s) 601, 708, 776
SfcI CTRYAG 1 cut(s) 390
SinI GGWCC 1 cut(s) 418
SmiMI CAYNNNNRTG 1 cut(s) 42
Sse9I AATT 7 cut(s) 211, 264, 345, 403, 423, 672, 820
SsiI CCGC 3 cut(s) 269, 558, 771
SspMI CTAG 4 cut(s) 186, 204, 245, 468
StyD4I CCNGG 3 cut(s) 72, 316, 800
StyI CCWWGG 2 cut(s) 384, 582
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 711
TasI AATT 7 cut(s) 211, 264, 345, 403, 423, 672, 820
TfiI GAWTC 1 cut(s) 545
Tru1I TTAA 2 cut(s) 588, 824
Tru9I TTAA 2 cut(s) 588, 824
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 4 cut(s) 54, 308, 468, 680
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 418
XapI RAATTY 1 cut(s) 211
XspI CTAG 4 cut(s) 186, 204, 245, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.