Rroxscaffold_6G00400380

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013306
Physical Location & Seq
Reverse (-)
22488162 .. 22489734
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00400380.1

Sequence Viewer

Length: 879 bp
ATGTTGAATGATCAAAGGGTTGGCACCAGCCGTGAACATGAAGATGATGATCACGGTGACGATGAGATGGTCCGGGATATCCACGCCTTGACACCAACTCATCCTCCACAGGCTGCTAATCGTGGTGGCCGTCAAAGAGAGGCTTGGGAAACTGGTAGTCAGAGATCATCATCTCTGTCCGTGGCTAGTACTGAAGGTGCTTCTAGTGAGAATTTTACTTCCATGAGTAGAGAGTTCAGTGCTCTAGTGGTTGCAGGGTCAACAATTCCGCATAGTGGTTTTAGTAACAATGATATGAATGATAGTGCTGTAAATAATCCTGGAAACAACTTGGGATTGGGTAGAATTGGAGAGGAGGACAATATGCCGGAGGAGACCAATCCCTTGGCTATAGTAACAGATAATTATCACTCTTCGGACCCAATTGCTTCTCCAAGAAGTATCGAGGCTAACAATAATAACATGGCTGGCTCTTCTTCATCAAGCATGATTACCACTAATCAAGGGCATCAAGGTGAGATTTCTGTGCATATGGTCAAGAAGGAAGAGGTGGAATCAAAGATATCCGCGTGGCAGAACGCAAAGATTGCCAAGGTTAACAACAGGTTCAAGAGGGAGGATGCTGTTATAAATGGGTGGGAAAGTGAGCAGGTTCAGAAAGCTTCTACATGGATGAAGAAAATTGAGAGGAAGTTGGAAGAGAAAAGAGCAAGGGCCTTCGAGAAGATGCAAAATGATATAGCCAAAGCTCACAGAAAAGCAGAGGAGAGGAAGGCATCCGCTGAGGCTAAGAGAGGAACAAAAGTGGCCAGGGTTCTTGAAATAGCCAATTTAATGAGAGCTGTTGGAAGAGCACCTGCCAAAAAGTCCTTCTTCTAA

Protein Analysis

292

Amino Acids

32.2

Weight (kDa)

6.53

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 182 - 288 2.6e-31 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41870 AT3G57540
fragaria_vesca FvH4_6g23510
malus_domestica MD12G1072300.v1.1 MD14G1069500.v1.1
prunus_persica Prupe.7G064800_v2.0.a1
pyrus_communis pycom12g06070 pycom14g05760
rosa_chinensis RchiOBHm_Chr3g0481501
rosa_laevigata RLG00000023391
rosa_multiflora Rmu_sc0010846.1_g000007
rosa_roxburghii Rroxscaffold_6G00400380
rosa_rugosa Rorug03G0192300
rosa_samantha Rh3AG243500 Rh3BG278400 Rh3CG273600 Rh3DG270400
rosa_wichuraiana Rw3G021750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 629
AarI CACCTGC 1 cut(s) 865
Acc36I ACCTGC 2 cut(s) 640, 865
AccB1I GGYRCC 1 cut(s) 23
AccII CGCG 1 cut(s) 569
AciI CCGC 3 cut(s) 269, 567, 780
AcoI YGGCCR 2 cut(s) 127, 807
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 3 cut(s) 7, 610, 821
AjnI CCWGG 2 cut(s) 319, 809
AjuI GAANNNNNNNTTGG 1 cut(s) 854
AluBI AGCT 3 cut(s) 662, 749, 842
AluI AGCT 3 cut(s) 662, 749, 842
Alw21I GWGCWC 2 cut(s) 244, 856
Alw26I GTCTC 1 cut(s) 368
AoxI GGCC 3 cut(s) 127, 714, 807
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 211
AspS9I GGNCC 3 cut(s) 70, 418, 714
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 68, 527
AvaII GGWCC 2 cut(s) 70, 418
BalI TGGCCA 1 cut(s) 809
BanI GGYRCC 1 cut(s) 23
Bbv12I GWGCWC 2 cut(s) 244, 856
BbvCI CCTCAGC 1 cut(s) 783
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 61
BceAI ACGGC 2 cut(s) 15, 114
BciT130I CCWGG 2 cut(s) 321, 811
BclI TGATCA 2 cut(s) 10, 49
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 368
BfaI CTAG 3 cut(s) 186, 204, 245
BfmI CTRYAG 1 cut(s) 390
BfuAI ACCTGC 2 cut(s) 640, 865
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmcAI AGTACT 1 cut(s) 190
Bme1390I CCNGG 3 cut(s) 74, 321, 811
Bme18I GGWCC 2 cut(s) 70, 418
BmgT120I GGNCC 3 cut(s) 70, 418, 714
BmiI GGNNCC 2 cut(s) 25, 420
BmrFI CCNGG 3 cut(s) 74, 321, 811
BmsI GCATC 4 cut(s) 517, 610, 717, 785
Bpu10I CCTNAGC 1 cut(s) 783
BpuMI CCSGG 1 cut(s) 74
BsaBI GATNNNNATC 3 cut(s) 48, 169, 405
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 4 cut(s) 180, 384, 591, 810
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 157
Bse8I GATNNNNATC 3 cut(s) 48, 169, 405
BseBI CCWGG 2 cut(s) 321, 811
BseDI CCNNGG 4 cut(s) 180, 384, 591, 810
BseGI GGATG 4 cut(s) 100, 625, 678, 776
BseJI GATNNNNATC 3 cut(s) 48, 169, 405
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 774
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 3 cut(s) 368, 386, 779
BseXI GCAGC 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 569
BshFI GGCC 3 cut(s) 129, 716, 809
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 244, 856
BsiSI CCGG 2 cut(s) 73, 368
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 368
BsnI GGCC 3 cut(s) 129, 716, 809
Bso31I GGTCTC 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 244, 856
Bsp143I GATC 3 cut(s) 10, 49, 164
BspACI CCGC 3 cut(s) 269, 567, 780
BspANI GGCC 3 cut(s) 129, 716, 809
BspCNI CTCAG 1 cut(s) 775
BspFNI CGCG 1 cut(s) 569
BspLI GGNNCC 2 cut(s) 25, 420
BspMI ACCTGC 2 cut(s) 640, 865
BspQI GCTCTTC 2 cut(s) 478, 844
BspT107I GGYRCC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 368
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 4 cut(s) 180, 384, 591, 810
BssMI GATC 3 cut(s) 10, 49, 164
BssT1I CCWWGG 2 cut(s) 384, 591
Bst2UI CCWGG 2 cut(s) 321, 811
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 5 cut(s) 418, 478, 540, 693, 844
BstAPI GCANNNNNTGC 1 cut(s) 587
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 2 cut(s) 783, 789
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 4 cut(s) 100, 625, 678, 776
BstFNI CGCG 1 cut(s) 569
BstKTI GATC 3 cut(s) 13, 52, 167
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 3 cut(s) 10, 49, 164
BstMWI GCNNNNNNNGC 1 cut(s) 587
BstNI CCWGG 2 cut(s) 321, 811
BstSCI CCNGG 3 cut(s) 72, 319, 809
BstSFI CTRYAG 1 cut(s) 390
BstUI CGCG 1 cut(s) 569
BstV1I GCAGC 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 385
BsuRI GGCC 3 cut(s) 129, 716, 809
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 4 cut(s) 100, 625, 678, 776
BtsIMutI CAGTG 1 cut(s) 244
BveI ACCTGC 2 cut(s) 640, 865
Cac8I GCNNGC 1 cut(s) 469
Cfr13I GGNCC 3 cut(s) 70, 418, 714
Csp6I GTAC 1 cut(s) 189
CviAII CATG 5 cut(s) 38, 223, 463, 487, 669
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 2 cut(s) 783, 789
DpnI GATC 3 cut(s) 12, 51, 166
DpnII GATC 3 cut(s) 10, 49, 164
EaeI YGGCCR 2 cut(s) 127, 807
Eam1104I CTCTTC 5 cut(s) 418, 478, 540, 693, 844
EarI CTCTTC 5 cut(s) 418, 478, 540, 693, 844
Eco130I CCWWGG 2 cut(s) 384, 591
Eco31I GGTCTC 1 cut(s) 368
Eco32I GATATC 2 cut(s) 79, 564
Eco47I GGWCC 2 cut(s) 70, 418
Eco57I CTGAAG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 714
EcoRII CCWGG 2 cut(s) 319, 809
EcoRV GATATC 2 cut(s) 79, 564
EcoT14I CCWWGG 2 cut(s) 384, 591
ErhI CCWWGG 2 cut(s) 384, 591
FaeI CATG 5 cut(s) 41, 226, 466, 490, 672
FalI AAGNNNNNCTT 3 cut(s) 127, 159, 857
FatI CATG 5 cut(s) 37, 222, 462, 486, 668
FauNDI CATATG 1 cut(s) 531
FbaI TGATCA 2 cut(s) 10, 49
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 4 cut(s) 87, 632, 685, 763
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 3 cut(s) 186, 204, 245
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 3 cut(s) 129, 716, 809
HapII CCGG 2 cut(s) 73, 368
Hin1II CATG 5 cut(s) 41, 226, 466, 490, 672
HincII GTYRAC 2 cut(s) 261, 598
HindII GTYRAC 2 cut(s) 261, 598
HindIII AAGCTT 1 cut(s) 660
HinfI GANTC 1 cut(s) 554
HpaI GTTAAC 1 cut(s) 598
HpaII CCGG 2 cut(s) 73, 368
HphI GGTGA 2 cut(s) 68, 527
Hpy166II GTNNAC 3 cut(s) 35, 261, 598
Hpy188I TCNGA 3 cut(s) 162, 418, 657
Hpy188III TCNNGA 4 cut(s) 538, 610, 721, 818
Hpy8I GTNNAC 3 cut(s) 35, 261, 598
HpyAV CCTTC 4 cut(s) 188, 535, 727, 766
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 3 cut(s) 254, 529, 730
HpyF10VI GCNNNNNNNGC 1 cut(s) 587
HpyF3I CTNAG 2 cut(s) 783, 789
Hsp92II CATG 5 cut(s) 41, 226, 466, 490, 672
Ksp22I TGATCA 2 cut(s) 10, 49
KspAI GTTAAC 1 cut(s) 598
Kzo9I GATC 3 cut(s) 10, 49, 164
LguI GCTCTTC 2 cut(s) 478, 844
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 4 cut(s) 517, 610, 717, 785
MaeI CTAG 3 cut(s) 186, 204, 245
MaeIII GTNAC 3 cut(s) 56, 284, 394
MalI GATC 3 cut(s) 12, 51, 166
MboI GATC 3 cut(s) 10, 49, 164
MfeI CAATTG 1 cut(s) 423
MhlI GDGCHC 2 cut(s) 244, 856
MlsI TGGCCA 1 cut(s) 809
MluCI AATT 7 cut(s) 211, 264, 345, 403, 423, 681, 829
MluNI TGGCCA 1 cut(s) 809
MmeI TCCRAC 2 cut(s) 675, 826
Mox20I TGGCCA 1 cut(s) 809
MscI TGGCCA 1 cut(s) 809
MseI TTAA 2 cut(s) 597, 833
MslI CAYNNNNRTG 2 cut(s) 42, 513
Msp20I TGGCCA 1 cut(s) 809
MspA1I CMGCKG 1 cut(s) 782
MspI CCGG 2 cut(s) 73, 368
MspR9I CCNGG 3 cut(s) 74, 321, 811
MunI CAATTG 1 cut(s) 423
MvaI CCWGG 2 cut(s) 321, 811
MvnI CGCG 1 cut(s) 569
MwoI GCNNNNNNNGC 1 cut(s) 587
NciI CCSGG 1 cut(s) 74
NdeI CATATG 1 cut(s) 531
NdeII GATC 3 cut(s) 10, 49, 164
NlaIII CATG 5 cut(s) 41, 226, 466, 490, 672
NlaIV GGNNCC 2 cut(s) 25, 420
NmuCI GTSAC 1 cut(s) 56
PaqCI CACCTGC 1 cut(s) 865
PciSI GCTCTTC 2 cut(s) 478, 844
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PfeI GAWTC 1 cut(s) 554
PfoI TCCNGGA 2 cut(s) 72, 319
PkrI GCNGC 1 cut(s) 115
PsiI TTATAA 1 cut(s) 629
Psp6I CCWGG 2 cut(s) 319, 809
PspGI CCWGG 2 cut(s) 319, 809
PspN4I GGNNCC 2 cut(s) 25, 420
PspPI GGNCC 3 cut(s) 70, 418, 714
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 2 cut(s) 42, 513
SapI GCTCTTC 2 cut(s) 478, 844
SaqAI TTAA 2 cut(s) 597, 833
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 3 cut(s) 10, 49, 164
Sau96I GGNCC 3 cut(s) 70, 418, 714
ScaI AGTACT 1 cut(s) 190
ScrFI CCNGG 3 cut(s) 74, 321, 811
SduI GDGCHC 2 cut(s) 244, 856
SfaNI GCATC 4 cut(s) 517, 610, 717, 785
SfcI CTRYAG 1 cut(s) 390
SinI GGWCC 2 cut(s) 70, 418
SmiMI CAYNNNNRTG 2 cut(s) 42, 513
Sse9I AATT 7 cut(s) 211, 264, 345, 403, 423, 681, 829
SsiI CCGC 3 cut(s) 269, 567, 780
SspMI CTAG 3 cut(s) 186, 204, 245
StyD4I CCNGG 3 cut(s) 72, 319, 809
StyI CCWWGG 2 cut(s) 384, 591
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 2 cut(s) 444, 720
TasI AATT 7 cut(s) 211, 264, 345, 403, 423, 681, 829
TatI WGTACW 1 cut(s) 188
TfiI GAWTC 1 cut(s) 554
Tru1I TTAA 2 cut(s) 597, 833
Tru9I TTAA 2 cut(s) 597, 833
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 4 cut(s) 54, 311, 468, 689
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 2 cut(s) 70, 418
XapI RAATTY 1 cut(s) 211
XspI CTAG 3 cut(s) 186, 204, 245
ZrmI AGTACT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.