FvH4_6g23510

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013306
Physical Location & Seq
Forward (+)
17565028 .. 17567108
2081 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23510.t1

Sequence Viewer

Length: 876 bp
ATGTTGAATGATCACAGGGCTGGCACCAGCCGTGAACAAGAAGATGATGATCACGGTGACGACGAGATAATCCGGGATATCCACACCATGACACCACCTCATCCTCCGCAGGCTGCTAATCGTGGCCGTCAAAGAGAAGCAGCTTGGGAAACTGGCAGCCACAGGTCATCGCCTCTGTCCATGGCTAGTACTGAAGGTGCTTCTAGTGAGAATTTCACTACCATGAGTAGAGAATTCAGTGCTCTAGTGGTTGCAGGGTCAACAATTGCGAATAGTAGTTATAGTAACAATGATATGAATGATAGTACTGTAAATAGTTCTGGAGACAACAACTTGGGATTGGGAAGGATTAGAGAGGAGGACAATATGCCGGAGGAGACCAACCCCTTGGCTATAGTACCGGATAATTATCACTCTTTGGACCCAATTGCTTCTCCAAGAAGTACTGGGGCTAACAACATGGCTGGCTCTTCTTCATCAAGCTTGATTGGCACTAATCAAGGGTCTCAAGGTGAGATTTCTGTGCATAGGGTCAAGAAGGAAGAGGTGGAATCCAAGATATCGGCGTGGCAGAACGCAAAGATTGCCAAGCTTAACAACAGGTTTAAGAGGGAGGATGCTATTATTAACGGGTGGGAAAGTGAGCAGGTTCAGAAAGCTTCTTCATGGATGAAGAAAGTTGAGAGGAAATTGGAAGAGAAAAGAGCAAGGGCCTTAGAGAAGATGCAAAATGATATAGCCAAAGCTCGCAGAAAAGCAGAGGAGAGGAAGGCGTCGGCTGAGGCTAAGAGAGGCACAAAAGTGGCAAGGGTTCTTGAAATAGCCAATTTAATGAGAGCTGTTGGAAGAGCACCTGCCAAGAAGTCCTTCTTCTAA

Protein Analysis

292

Amino Acids

32.1

Weight (kDa)

7.95

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 181 - 287 2.5e-30 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41870 AT3G57540
fragaria_vesca FvH4_6g23510
malus_domestica MD12G1072300.v1.1 MD14G1069500.v1.1
prunus_persica Prupe.7G064800_v2.0.a1
pyrus_communis pycom12g06070 pycom14g05760
rosa_chinensis RchiOBHm_Chr3g0481501
rosa_laevigata RLG00000023391
rosa_multiflora Rmu_sc0010846.1_g000007
rosa_roxburghii Rroxscaffold_6G00400380
rosa_rugosa Rorug03G0192300
rosa_samantha Rh3AG243500 Rh3BG278400 Rh3CG273600 Rh3DG270400
rosa_wichuraiana Rw3G021750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 862
Acc36I ACCTGC 2 cut(s) 637, 862
AccB1I GGYRCC 1 cut(s) 23
AciI CCGC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 2 cut(s) 211, 233
AcuI CTGAAG 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 773
AfaI GTAC 4 cut(s) 190, 307, 399, 445
AgsI TTSAA 2 cut(s) 7, 818
AjuI GAANNNNNNNTTGG 1 cut(s) 851
AleI CACNNNNGTG 1 cut(s) 800
AluBI AGCT 6 cut(s) 143, 483, 592, 659, 746, 839
AluI AGCT 6 cut(s) 143, 483, 592, 659, 746, 839
Alw21I GWGCWC 2 cut(s) 244, 853
Alw26I GTCTC 3 cut(s) 318, 371, 510
AoxI GGCC 2 cut(s) 124, 711
ApeKI GCWGC 3 cut(s) 113, 140, 156
ApoI RAATTY 2 cut(s) 211, 233
Asp700I GAANNNNTTC 1 cut(s) 866
AspS9I GGNCC 2 cut(s) 421, 711
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 68, 524
AvaII GGWCC 1 cut(s) 421
BanI GGYRCC 1 cut(s) 23
Bbv12I GWGCWC 2 cut(s) 244, 853
BbvCI CCTCAGC 1 cut(s) 780
BbvI GCAGC 3 cut(s) 100, 152, 168
BceAI ACGGC 2 cut(s) 15, 111
BclI TGATCA 2 cut(s) 10, 49
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 3 cut(s) 318, 371, 510
BfaI CTAG 3 cut(s) 186, 204, 245
BfmI CTRYAG 1 cut(s) 393
BfuAI ACCTGC 2 cut(s) 637, 862
BisI GCNGC 3 cut(s) 114, 141, 157
BlsI GCNGC 3 cut(s) 115, 142, 158
BmcAI AGTACT 3 cut(s) 190, 307, 445
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 2 cut(s) 421, 711
BmiI GGNNCC 2 cut(s) 25, 423
BmrFI CCNGG 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 2 cut(s) 607, 714
BmuI ACTGGG 1 cut(s) 456
BpmI CTGGAG 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 780
BpuEI CTTGAG 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 74
BsaBI GATNNNNATC 2 cut(s) 48, 408
BsaHI GRCGYC 1 cut(s) 773
BsaI GGTCTC 2 cut(s) 371, 510
BsaJI CCNNGG 2 cut(s) 180, 387
BsaWI WCCGGW 1 cut(s) 400
Bse1I ACTGG 2 cut(s) 157, 451
Bse8I GATNNNNATC 2 cut(s) 48, 408
BseDI CCNNGG 2 cut(s) 180, 387
BseGI GGATG 3 cut(s) 100, 622, 675
BseJI GATNNNNATC 2 cut(s) 48, 408
BseMII CTCAG 1 cut(s) 771
BseNI ACTGG 2 cut(s) 157, 451
BseRI GAGGAG 3 cut(s) 371, 389, 776
BseXI GCAGC 3 cut(s) 100, 152, 168
BshFI GGCC 2 cut(s) 126, 713
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 244, 853
BsiSI CCGG 3 cut(s) 73, 371, 401
BsmAI GTCTC 3 cut(s) 318, 371, 510
BsnI GGCC 2 cut(s) 126, 713
Bso31I GGTCTC 2 cut(s) 371, 510
Bsp1286I GDGCHC 2 cut(s) 244, 853
Bsp143I GATC 2 cut(s) 10, 49
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 1 cut(s) 107
BspANI GGCC 2 cut(s) 126, 713
BspCNI CTCAG 1 cut(s) 772
BspLI GGNNCC 2 cut(s) 25, 423
BspMI ACCTGC 2 cut(s) 637, 862
BspQI GCTCTTC 2 cut(s) 475, 841
BspT107I GGYRCC 1 cut(s) 23
BspTNI GGTCTC 2 cut(s) 371, 510
BsrI ACTGG 2 cut(s) 157, 451
BssECI CCNNGG 2 cut(s) 180, 387
BssMI GATC 2 cut(s) 10, 49
BssNI GRCGYC 1 cut(s) 773
BssT1I CCWWGG 2 cut(s) 180, 387
Bst4CI ACNGT 2 cut(s) 56, 310
Bst6I CTCTTC 4 cut(s) 475, 537, 690, 841
BstACI GRCGYC 1 cut(s) 773
BstAPI GCANNNNNTGC 1 cut(s) 584
BstC8I GCNNGC 4 cut(s) 22, 111, 466, 748
BstDEI CTNAG 3 cut(s) 715, 780, 786
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 3 cut(s) 100, 622, 675
BstKTI GATC 2 cut(s) 13, 52
BstMAI GTCTC 3 cut(s) 318, 371, 510
BstMBI GATC 2 cut(s) 10, 49
BstMWI GCNNNNNNNGC 2 cut(s) 489, 584
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 393
BstV1I GCAGC 3 cut(s) 100, 152, 168
BstXI CCANNNNNNTGG 1 cut(s) 388
BsuRI GGCC 2 cut(s) 126, 713
BtgI CCRYGG 1 cut(s) 180
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 3 cut(s) 100, 622, 675
BtsIMutI CAGTG 1 cut(s) 244
BveI ACCTGC 2 cut(s) 637, 862
Cac8I GCNNGC 4 cut(s) 22, 111, 466, 748
Cfr13I GGNCC 2 cut(s) 421, 711
CseI GACGC 1 cut(s) 762
Csp6I GTAC 4 cut(s) 189, 306, 398, 444
CviAII CATG 5 cut(s) 88, 181, 223, 460, 666
CviQI GTAC 4 cut(s) 189, 306, 398, 444
DdeI CTNAG 3 cut(s) 715, 780, 786
DpnI GATC 2 cut(s) 12, 51
DpnII GATC 2 cut(s) 10, 49
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 4 cut(s) 475, 537, 690, 841
EarI CTCTTC 4 cut(s) 475, 537, 690, 841
Eco130I CCWWGG 2 cut(s) 180, 387
Eco31I GGTCTC 2 cut(s) 371, 510
Eco32I GATATC 2 cut(s) 79, 561
Eco47I GGWCC 1 cut(s) 421
Eco57I CTGAAG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 711
EcoRI GAATTC 1 cut(s) 233
EcoRV GATATC 2 cut(s) 79, 561
EcoT14I CCWWGG 2 cut(s) 180, 387
ErhI CCWWGG 2 cut(s) 180, 387
FaeI CATG 5 cut(s) 91, 184, 226, 463, 669
FalI AAGNNNNNCTT 2 cut(s) 851, 854
FatI CATG 5 cut(s) 87, 180, 222, 459, 665
FbaI TGATCA 2 cut(s) 10, 49
Fnu4HI GCNGC 3 cut(s) 114, 141, 157
FokI GGATG 3 cut(s) 87, 629, 682
Fsp4HI GCNGC 3 cut(s) 114, 141, 157
FspBI CTAG 3 cut(s) 186, 204, 245
GluI GCNGC 3 cut(s) 114, 141, 157
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 2 cut(s) 126, 713
HapII CCGG 3 cut(s) 73, 371, 401
HgaI GACGC 1 cut(s) 762
Hin1I GRCGYC 1 cut(s) 773
Hin1II CATG 5 cut(s) 91, 184, 226, 463, 669
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HindIII AAGCTT 3 cut(s) 481, 590, 657
HinfI GANTC 1 cut(s) 551
HpaII CCGG 3 cut(s) 73, 371, 401
HphI GGTGA 2 cut(s) 68, 524
Hpy166II GTNNAC 2 cut(s) 35, 261
Hpy188I TCNGA 1 cut(s) 654
Hpy188III TCNNGA 3 cut(s) 321, 535, 815
Hpy8I GTNNAC 2 cut(s) 35, 261
Hpy99I CGWCG 2 cut(s) 65, 778
HpyAV CCTTC 4 cut(s) 188, 339, 532, 763
HpyCH4III ACNGT 2 cut(s) 56, 310
HpyCH4V TGCA 3 cut(s) 254, 526, 727
HpyF10VI GCNNNNNNNGC 2 cut(s) 489, 584
HpyF3I CTNAG 3 cut(s) 715, 780, 786
Hsp92I GRCGYC 1 cut(s) 773
Hsp92II CATG 5 cut(s) 91, 184, 226, 463, 669
Ksp22I TGATCA 2 cut(s) 10, 49
Kzo9I GATC 2 cut(s) 10, 49
LguI GCTCTTC 2 cut(s) 475, 841
Lsp1109I GCAGC 3 cut(s) 100, 152, 168
LweI GCATC 2 cut(s) 607, 714
MaeI CTAG 3 cut(s) 186, 204, 245
MaeIII GTNAC 2 cut(s) 56, 284
MalI GATC 2 cut(s) 12, 51
MboI GATC 2 cut(s) 10, 49
MfeI CAATTG 2 cut(s) 264, 426
MhlI GDGCHC 2 cut(s) 244, 853
MluCI AATT 7 cut(s) 211, 233, 264, 406, 426, 689, 826
MmeI TCCRAC 1 cut(s) 823
MroXI GAANNNNTTC 1 cut(s) 866
MseI TTAA 4 cut(s) 594, 606, 627, 830
MslI CAYNNNNRTG 2 cut(s) 221, 800
MspI CCGG 3 cut(s) 73, 371, 401
MspR9I CCNGG 1 cut(s) 74
MunI CAATTG 2 cut(s) 264, 426
MwoI GCNNNNNNNGC 2 cut(s) 489, 584
NciI CCSGG 1 cut(s) 74
NcoI CCATGG 1 cut(s) 180
NdeII GATC 2 cut(s) 10, 49
NlaIII CATG 5 cut(s) 91, 184, 226, 463, 669
NlaIV GGNNCC 2 cut(s) 25, 423
NmuCI GTSAC 1 cut(s) 56
OliI CACNNNNGTG 1 cut(s) 800
PaqCI CACCTGC 1 cut(s) 862
PciSI GCTCTTC 2 cut(s) 475, 841
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 866
PfeI GAWTC 1 cut(s) 551
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 3 cut(s) 115, 142, 158
PspN4I GGNNCC 2 cut(s) 25, 423
PspPI GGNCC 2 cut(s) 421, 711
RsaI GTAC 4 cut(s) 190, 307, 399, 445
RsaNI GTAC 4 cut(s) 189, 306, 398, 444
RseI CAYNNNNRTG 2 cut(s) 221, 800
SapI GCTCTTC 2 cut(s) 475, 841
SaqAI TTAA 4 cut(s) 594, 606, 627, 830
SatI GCNGC 3 cut(s) 114, 141, 157
Sau3AI GATC 2 cut(s) 10, 49
Sau96I GGNCC 2 cut(s) 421, 711
ScaI AGTACT 3 cut(s) 190, 307, 445
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 2 cut(s) 244, 853
SfaNI GCATC 2 cut(s) 607, 714
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 1 cut(s) 421
SmiMI CAYNNNNRTG 2 cut(s) 221, 800
SmlI CTYRAG 1 cut(s) 507
SmoI CTYRAG 1 cut(s) 507
Sse9I AATT 7 cut(s) 211, 233, 264, 406, 426, 689, 826
SsiI CCGC 1 cut(s) 107
SspMI CTAG 3 cut(s) 186, 204, 245
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 2 cut(s) 180, 387
TaaI ACNGT 2 cut(s) 56, 310
TasI AATT 7 cut(s) 211, 233, 264, 406, 426, 689, 826
TatI WGTACW 3 cut(s) 188, 305, 443
TfiI GAWTC 1 cut(s) 551
Tru1I TTAA 4 cut(s) 594, 606, 627, 830
Tru9I TTAA 4 cut(s) 594, 606, 627, 830
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 3 cut(s) 113, 140, 156
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 4 cut(s) 311, 465, 654, 686
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 421
XapI RAATTY 2 cut(s) 211, 233
XmnI GAANNNNTTC 1 cut(s) 866
XspI CTAG 3 cut(s) 186, 204, 245
ZrmI AGTACT 3 cut(s) 190, 307, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.