Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0013306

Physical Location & Seq

Genomic Coordinates Forward (+)

27321664 .. 27324193

Gene Structure 2530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG278400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTTGAATGATCAAAGGGTTGGCACCAGCCGTGAACATGAAGATGATGATCACGGTGACGATGAGATAGTCCGGGATATCCACGCCTTGACACCACCTCATCCTCCGCAGGCTGCTAATAGTGGTGGCCGTCAAAGAGAGGCTTGGGAAACTGGTAGTCAGATATCACCATCTCTGTCCGTGGCTAGTACTGAAGGTGCTTCTAGTGAGAATTTTACTTCCATGAGTAGAGAGTTCAGTGCTCTAGTGGTTGCAGGGTCAACAATTCCGAATAGTAGTTTTAGTAACAATGATATGAATGATGGTGCTGTAAATAATCCTGGAAACAACTTGGGATTGGGTAGAATTGGAGAGGAGGACAATATGCTGGAGGAGACCAATCCCTTGGCTATAGTAACAGATAATTATCACTCTTCGGACCCAATTGCTTCTCCAAGAAGTATCGGGGCTAACAATAATACCATGGCTGGCTCTTCTTCATCAAGCATGATTGGCACTAATCAAGGGCATCAAGGTGAGATTTCTGTGCATGTGGTCAAGAAGGAAGAGGTGGAATCAAAGATATCCGCGTGGCAGAACGCAAAGATTGCCAAGGTTAACAACAGGTTCAAGAGGGAGGATGCTGTTATAAATGGGTGGGAAAGTGAGCAGGTTCAGAAAGCTTCTACATGGATGAAGAAAATTGAGTGTAAAAACAATTTGTTATTGTCTTTGGGTCTGATTTTTCACAAAATTGGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0016020 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0033993 GO:0042221 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0097305 GO:0097306 GO:1900457 GO:1900458 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

247

Amino Acids

26.72

Weight (kDa)

5.18

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_C	PF03763	182 - 231	1.5e-11	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41870 AT3G57540
fragaria_vesca	FvH4_6g23510
malus_domestica	MD12G1072300.v1.1 MD14G1069500.v1.1
prunus_persica	Prupe.7G064800_v2.0.a1
pyrus_communis	pycom12g06070 pycom14g05760
rosa_chinensis	RchiOBHm_Chr3g0481501
rosa_laevigata	RLG00000023391
rosa_multiflora	Rmu_sc0010846.1_g000007
rosa_roxburghii	Rroxscaffold_6G00400380
rosa_rugosa	Rorug03G0192300
rosa_samantha	Rh3AG243500 Rh3BG278400 Rh3CG273600 Rh3DG270400
rosa_wichuraiana	Rw3G021750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	629
Acc36I	ACCTGC	1 cut(s)	640
AccB1I	GGYRCC	1 cut(s)	23
AccII	CGCG	1 cut(s)	569
AciI	CCGC	2 cut(s)	107, 567
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	7, 610
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	1 cut(s)	662
AluI	AGCT	1 cut(s)	662
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	368
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	418
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	3 cut(s)	68, 159, 527
AvaII	GGWCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	2 cut(s)	178, 296
BceAI	ACGGC	2 cut(s)	15, 114
BciT130I	CCWGG	1 cut(s)	321
BclI	TGATCA	2 cut(s)	10, 49
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	3 cut(s)	186, 204, 245
BfmI	CTRYAG	1 cut(s)	390
BfuAI	ACCTGC	1 cut(s)	640
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
BmcAI	AGTACT	1 cut(s)	190
Bme1390I	CCNGG	2 cut(s)	74, 321
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	2 cut(s)	25, 420
BmrFI	CCNGG	2 cut(s)	74, 321
BmsI	GCATC	2 cut(s)	517, 610
BpmI	CTGGAG	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	74
BsaBI	GATNNNNATC	2 cut(s)	48, 405
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	4 cut(s)	180, 384, 462, 591
Bse1I	ACTGG	1 cut(s)	157
Bse8I	GATNNNNATC	2 cut(s)	48, 405
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	4 cut(s)	180, 384, 462, 591
BseGI	GGATG	3 cut(s)	100, 625, 678
BseJI	GATNNNNATC	2 cut(s)	48, 405
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	368, 386
BseXI	GCAGC	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	569
BshFI	GGCC	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	129
Bso31I	GGTCTC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	10, 49
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	2 cut(s)	107, 567
BspANI	GGCC	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	569
BspLI	GGNNCC	2 cut(s)	25, 420
BspMI	ACCTGC	1 cut(s)	640
BspQI	GCTCTTC	1 cut(s)	478
BspT107I	GGYRCC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	4 cut(s)	180, 384, 462, 591
BssMI	GATC	2 cut(s)	10, 49
BssT1I	CCWWGG	3 cut(s)	384, 462, 591
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	3 cut(s)	418, 478, 540
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstC8I	GCNNGC	2 cut(s)	111, 469
BstDSI	CCRYGG	2 cut(s)	180, 462
BstF5I	GGATG	3 cut(s)	100, 625, 678
BstFNI	CGCG	1 cut(s)	569
BstKTI	GATC	2 cut(s)	13, 52
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	2 cut(s)	10, 49
BstMWI	GCNNNNNNNGC	2 cut(s)	492, 587
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	72, 319
BstSFI	CTRYAG	1 cut(s)	390
BstUI	CGCG	1 cut(s)	569
BstV1I	GCAGC	1 cut(s)	100
BstXI	CCANNNNNNTGG	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	129
BtgI	CCRYGG	2 cut(s)	180, 462
BtsCI	GGATG	3 cut(s)	100, 625, 678
BtsIMutI	CAGTG	1 cut(s)	244
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	2 cut(s)	111, 469
Cfr13I	GGNCC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	6 cut(s)	38, 223, 463, 487, 530, 669
CviQI	GTAC	1 cut(s)	189
DpnI	GATC	2 cut(s)	12, 51
DpnII	GATC	2 cut(s)	10, 49
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	3 cut(s)	418, 478, 540
EarI	CTCTTC	3 cut(s)	418, 478, 540
Eco130I	CCWWGG	3 cut(s)	384, 462, 591
Eco31I	GGTCTC	1 cut(s)	368
Eco32I	GATATC	3 cut(s)	79, 165, 564
Eco47I	GGWCC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	319
EcoRV	GATATC	3 cut(s)	79, 165, 564
EcoT14I	CCWWGG	3 cut(s)	384, 462, 591
ErhI	CCWWGG	3 cut(s)	384, 462, 591
FaeI	CATG	6 cut(s)	41, 226, 466, 490, 533, 672
FalI	AAGNNNNNCTT	2 cut(s)	127, 159
FatI	CATG	6 cut(s)	37, 222, 462, 486, 529, 668
FbaI	TGATCA	2 cut(s)	10, 49
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	3 cut(s)	87, 632, 685
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	3 cut(s)	186, 204, 245
GluI	GCNGC	1 cut(s)	114
GsuI	CTGGAG	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	6 cut(s)	41, 226, 466, 490, 533, 672
HincII	GTYRAC	2 cut(s)	261, 598
HindII	GTYRAC	2 cut(s)	261, 598
HindIII	AAGCTT	1 cut(s)	660
HinfI	GANTC	1 cut(s)	554
HpaI	GTTAAC	1 cut(s)	598
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	3 cut(s)	68, 159, 527
Hpy166II	GTNNAC	3 cut(s)	35, 261, 598
Hpy188I	TCNGA	5 cut(s)	162, 270, 418, 657, 720
Hpy188III	TCNNGA	2 cut(s)	538, 610
Hpy8I	GTNNAC	3 cut(s)	35, 261, 598
HpyAV	CCTTC	2 cut(s)	188, 535
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	254, 529
HpyF10VI	GCNNNNNNNGC	2 cut(s)	492, 587
Hsp92II	CATG	6 cut(s)	41, 226, 466, 490, 533, 672
Ksp22I	TGATCA	2 cut(s)	10, 49
KspAI	GTTAAC	1 cut(s)	598
Kzo9I	GATC	2 cut(s)	10, 49
LguI	GCTCTTC	1 cut(s)	478
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	2 cut(s)	517, 610
MaeI	CTAG	3 cut(s)	186, 204, 245
MaeIII	GTNAC	3 cut(s)	56, 284, 394
MalI	GATC	2 cut(s)	12, 51
MboI	GATC	2 cut(s)	10, 49
MboII	GAAGA	6 cut(s)	53, 405, 465, 468, 557, 688
MfeI	CAATTG	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	8 cut(s)	211, 264, 345, 403, 423, 681, 697, 732
MnlI	CCTC	9 cut(s)	108, 114, 133, 346, 349, 364, 541, 606, 610
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	2 cut(s)	42, 513
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	74, 321
MunI	CAATTG	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	569
MwoI	GCNNNNNNNGC	2 cut(s)	492, 587
NciI	CCSGG	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	2 cut(s)	10, 49
NlaIII	CATG	6 cut(s)	41, 226, 466, 490, 533, 672
NlaIV	GGNNCC	2 cut(s)	25, 420
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	1 cut(s)	533
PciSI	GCTCTTC	1 cut(s)	478
PfeI	GAWTC	1 cut(s)	554
PfoI	TCCNGGA	2 cut(s)	72, 319
PkrI	GCNGC	1 cut(s)	115
PsiI	TTATAA	1 cut(s)	629
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	25, 420
PspPI	GGNCC	1 cut(s)	418
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	2 cut(s)	42, 513
SapI	GCTCTTC	1 cut(s)	478
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	2 cut(s)	10, 49
Sau96I	GGNCC	1 cut(s)	418
ScaI	AGTACT	1 cut(s)	190
ScrFI	CCNGG	2 cut(s)	74, 321
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	8 cut(s)	100, 199, 517, 552, 597, 608, 654, 664
SfaNI	GCATC	2 cut(s)	517, 610
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	418
SmiMI	CAYNNNNRTG	2 cut(s)	42, 513
Sse9I	AATT	8 cut(s)	211, 264, 345, 403, 423, 681, 697, 732
SsiI	CCGC	2 cut(s)	107, 567
SspMI	CTAG	3 cut(s)	186, 204, 245
StyD4I	CCNGG	2 cut(s)	72, 319
StyI	CCWWGG	3 cut(s)	384, 462, 591
TaaI	ACNGT	1 cut(s)	56
TasI	AATT	8 cut(s)	211, 264, 345, 403, 423, 681, 697, 732
TatI	WGTACW	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	4 cut(s)	54, 311, 468, 689
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	1 cut(s)	533
XspI	CTAG	3 cut(s)	186, 204, 245
ZrmI	AGTACT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.