Rw3G021750

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0013306
Physical Location & Seq
Forward (+)
26375685 .. 26376948
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G021750.1

Sequence Viewer

Length: 864 bp
ATGTTGAATGATCAAAGGGTTGGCAGTGAACATGAAGATGATGATCACGGTGACGATGAGATAGTCCGGGATATCCACGCCTTGACACCACCTCATCCTGCACAGGCTGCTAATCGTGGTGGCCGTCAAAGAGAGGCTTGGGAAACTGGTAGTCAGAGATCATCATCTCTGTCCGTGGCTAGTATTGAAGGTGCTTCTAGTGAGAATTTTACTTCCATGAGTAGAGAGTTCAGTGCTCTAGTGGTTGCAGGGTCAACAATTCCGCATAGTGGTAGTAACAATGATATGAATGATAGTGCTGTAAATAATCCTGGAAACAACAACTTGGGATTGGGTAGAATTGGAGAGGAGGACAATATGCCGGAGGAGACCAATCCCTTGGCTATAGTAACAGATAATTATCACTCTTCGGACCCAATTGCTTCTCCAAGAAGTATCGGGGCTAACAATAATAACATGGCTAGCTCTTCTTCATCAAGCATGATTGGCACTAATCAAGGTGAGATTTCTGTGCATATGGTCAAGAAGGAAGAGGTGGAATCAAAGATATCCGCGTGGCAGAACGCAAAGATTGCCAAGGTTAACAACAGGTTCAAGAGGGAGGATGCTGTTATAAATGGGTGGGAAAGTGAGCAGGTGCAGAAAGCTTCTACATGGATGAAGAAAATTGAGAGGAAGTTGGAAGAGAAAAGAGCAAGGGCCTTCGAGAAGATGCAAAATGATATAGCCAAAGCTCACAGAAAAGCAGAGGAGAGGAAGGCATCCGCTGAGGCTAAGAGAGGAACAAAAGTGGCCAGGGTTCTTGAAATAGCCAATTTAATGAGAGCTGTTGGAAGAGCACCTGCCAAAAAGTCCTTCTTCTAA

Protein Analysis

287

Amino Acids

31.46

Weight (kDa)

6.48

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 177 - 283 2.5e-31 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41870 AT3G57540
fragaria_vesca FvH4_6g23510
malus_domestica MD12G1072300.v1.1 MD14G1069500.v1.1
prunus_persica Prupe.7G064800_v2.0.a1
pyrus_communis pycom12g06070 pycom14g05760
rosa_chinensis RchiOBHm_Chr3g0481501
rosa_laevigata RLG00000023391
rosa_multiflora Rmu_sc0010846.1_g000007
rosa_roxburghii Rroxscaffold_6G00400380
rosa_rugosa Rorug03G0192300
rosa_samantha Rh3AG243500 Rh3BG278400 Rh3CG273600 Rh3DG270400
rosa_wichuraiana Rw3G021750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 614
AarI CACCTGC 2 cut(s) 625, 850
Acc36I ACCTGC 2 cut(s) 625, 850
AccII CGCG 1 cut(s) 554
AciI CCGC 3 cut(s) 263, 552, 765
AcoI YGGCCR 2 cut(s) 121, 792
AcsI RAATTY 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 4 cut(s) 7, 188, 595, 806
AjnI CCWGG 2 cut(s) 310, 794
AjuI GAANNNNNNNTTGG 1 cut(s) 839
AluBI AGCT 4 cut(s) 465, 647, 734, 827
AluI AGCT 4 cut(s) 465, 647, 734, 827
Alw21I GWGCWC 2 cut(s) 238, 841
Alw26I GTCTC 1 cut(s) 362
AoxI GGCC 3 cut(s) 121, 699, 792
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 205
AspS9I GGNCC 2 cut(s) 412, 699
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 62, 512
AsuNHI GCTAGC 1 cut(s) 461
AvaII GGWCC 1 cut(s) 412
BalI TGGCCA 1 cut(s) 794
Bbv12I GWGCWC 2 cut(s) 238, 841
BbvCI CCTCAGC 1 cut(s) 768
BbvI GCAGC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 2 cut(s) 312, 796
BclI TGATCA 2 cut(s) 10, 43
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 4 cut(s) 180, 198, 239, 462
BfmI CTRYAG 1 cut(s) 384
BfuAI ACCTGC 2 cut(s) 625, 850
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 3 cut(s) 68, 312, 796
Bme18I GGWCC 1 cut(s) 412
BmgT120I GGNCC 2 cut(s) 412, 699
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 3 cut(s) 68, 312, 796
BmsI GCATC 3 cut(s) 595, 702, 770
BmtI GCTAGC 1 cut(s) 465
Bpu10I CCTNAGC 1 cut(s) 768
BpuMI CCSGG 1 cut(s) 68
BsaBI GATNNNNATC 3 cut(s) 42, 163, 399
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 4 cut(s) 174, 378, 576, 795
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 151
Bse8I GATNNNNATC 3 cut(s) 42, 163, 399
BseBI CCWGG 2 cut(s) 312, 796
BseDI CCNNGG 4 cut(s) 174, 378, 576, 795
BseGI GGATG 4 cut(s) 94, 610, 663, 761
BseJI GATNNNNATC 3 cut(s) 42, 163, 399
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 759
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 3 cut(s) 362, 380, 764
BseXI GCAGC 1 cut(s) 94
BsgI GTGCAG 2 cut(s) 84, 659
Bsh1236I CGCG 1 cut(s) 554
BshFI GGCC 3 cut(s) 123, 701, 794
BsiHKAI GWGCWC 2 cut(s) 238, 841
BsiSI CCGG 2 cut(s) 67, 362
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 362
BsnI GGCC 3 cut(s) 123, 701, 794
Bso31I GGTCTC 1 cut(s) 362
Bsp1286I GDGCHC 2 cut(s) 238, 841
Bsp143I GATC 3 cut(s) 10, 43, 158
BspACI CCGC 3 cut(s) 263, 552, 765
BspANI GGCC 3 cut(s) 123, 701, 794
BspCNI CTCAG 1 cut(s) 760
BspFNI CGCG 1 cut(s) 554
BspLI GGNNCC 1 cut(s) 414
BspMI ACCTGC 2 cut(s) 625, 850
BspOI GCTAGC 1 cut(s) 465
BspQI GCTCTTC 2 cut(s) 472, 829
BspTNI GGTCTC 1 cut(s) 362
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 4 cut(s) 174, 378, 576, 795
BssMI GATC 3 cut(s) 10, 43, 158
BssT1I CCWWGG 2 cut(s) 378, 576
Bst2UI CCWGG 2 cut(s) 312, 796
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 5 cut(s) 412, 472, 525, 678, 829
BstAPI GCANNNNNTGC 2 cut(s) 107, 572
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 2 cut(s) 768, 774
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 4 cut(s) 94, 610, 663, 761
BstFNI CGCG 1 cut(s) 554
BstKTI GATC 3 cut(s) 13, 46, 161
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 3 cut(s) 10, 43, 158
BstMWI GCNNNNNNNGC 3 cut(s) 107, 486, 572
BstNI CCWGG 2 cut(s) 312, 796
BstSCI CCNGG 3 cut(s) 66, 310, 794
BstSFI CTRYAG 1 cut(s) 384
BstUI CGCG 1 cut(s) 554
BstV1I GCAGC 1 cut(s) 94
BstXI CCANNNNNNTGG 1 cut(s) 379
BsuRI GGCC 3 cut(s) 123, 701, 794
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 4 cut(s) 94, 610, 663, 761
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 2 cut(s) 31, 238
BveI ACCTGC 2 cut(s) 625, 850
Cac8I GCNNGC 1 cut(s) 463
Cfr13I GGNCC 2 cut(s) 412, 699
CviAII CATG 5 cut(s) 32, 217, 457, 481, 654
DdeI CTNAG 2 cut(s) 768, 774
DpnI GATC 3 cut(s) 12, 45, 160
DpnII GATC 3 cut(s) 10, 43, 158
EaeI YGGCCR 2 cut(s) 121, 792
Eam1104I CTCTTC 5 cut(s) 412, 472, 525, 678, 829
EarI CTCTTC 5 cut(s) 412, 472, 525, 678, 829
Eco130I CCWWGG 2 cut(s) 378, 576
Eco31I GGTCTC 1 cut(s) 362
Eco32I GATATC 2 cut(s) 73, 549
Eco47I GGWCC 1 cut(s) 412
EcoO109I RGGNCCY 1 cut(s) 699
EcoRII CCWGG 2 cut(s) 310, 794
EcoRV GATATC 2 cut(s) 73, 549
EcoT14I CCWWGG 2 cut(s) 378, 576
ErhI CCWWGG 2 cut(s) 378, 576
FaeI CATG 5 cut(s) 35, 220, 460, 484, 657
FalI AAGNNNNNCTT 3 cut(s) 121, 153, 842
FatI CATG 5 cut(s) 31, 216, 456, 480, 653
FauNDI CATATG 1 cut(s) 516
FbaI TGATCA 2 cut(s) 10, 43
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 4 cut(s) 81, 617, 670, 748
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 4 cut(s) 180, 198, 239, 462
GluI GCNGC 1 cut(s) 108
HaeIII GGCC 3 cut(s) 123, 701, 794
HapII CCGG 2 cut(s) 67, 362
Hin1II CATG 5 cut(s) 35, 220, 460, 484, 657
HincII GTYRAC 2 cut(s) 255, 583
HindII GTYRAC 2 cut(s) 255, 583
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 1 cut(s) 539
HpaI GTTAAC 1 cut(s) 583
HpaII CCGG 2 cut(s) 67, 362
HphI GGTGA 2 cut(s) 62, 512
Hpy166II GTNNAC 3 cut(s) 29, 255, 583
Hpy188I TCNGA 2 cut(s) 156, 412
Hpy188III TCNNGA 4 cut(s) 523, 595, 706, 803
Hpy8I GTNNAC 3 cut(s) 29, 255, 583
HpyAV CCTTC 4 cut(s) 182, 520, 712, 751
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 5 cut(s) 101, 248, 514, 640, 715
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 486, 572
HpyF3I CTNAG 2 cut(s) 768, 774
Hsp92II CATG 5 cut(s) 35, 220, 460, 484, 657
Ksp22I TGATCA 2 cut(s) 10, 43
KspAI GTTAAC 1 cut(s) 583
Kzo9I GATC 3 cut(s) 10, 43, 158
LguI GCTCTTC 2 cut(s) 472, 829
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 3 cut(s) 595, 702, 770
MaeI CTAG 4 cut(s) 180, 198, 239, 462
MaeIII GTNAC 3 cut(s) 50, 275, 388
MalI GATC 3 cut(s) 12, 45, 160
MboI GATC 3 cut(s) 10, 43, 158
MfeI CAATTG 1 cut(s) 417
MhlI GDGCHC 2 cut(s) 238, 841
MlsI TGGCCA 1 cut(s) 794
MluCI AATT 7 cut(s) 205, 258, 339, 397, 417, 666, 814
MluNI TGGCCA 1 cut(s) 794
MmeI TCCRAC 2 cut(s) 660, 811
Mox20I TGGCCA 1 cut(s) 794
MscI TGGCCA 1 cut(s) 794
MseI TTAA 2 cut(s) 582, 818
MslI CAYNNNNRTG 1 cut(s) 36
Msp20I TGGCCA 1 cut(s) 794
MspA1I CMGCKG 1 cut(s) 767
MspI CCGG 2 cut(s) 67, 362
MspR9I CCNGG 3 cut(s) 68, 312, 796
MunI CAATTG 1 cut(s) 417
MvaI CCWGG 2 cut(s) 312, 796
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 3 cut(s) 107, 486, 572
NciI CCSGG 1 cut(s) 68
NdeI CATATG 1 cut(s) 516
NdeII GATC 3 cut(s) 10, 43, 158
NheI GCTAGC 1 cut(s) 461
NlaIII CATG 5 cut(s) 35, 220, 460, 484, 657
NlaIV GGNNCC 1 cut(s) 414
NmuCI GTSAC 1 cut(s) 50
PaqCI CACCTGC 2 cut(s) 625, 850
PciSI GCTCTTC 2 cut(s) 472, 829
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PfeI GAWTC 1 cut(s) 539
PfoI TCCNGGA 2 cut(s) 66, 310
PkrI GCNGC 1 cut(s) 109
PsiI TTATAA 1 cut(s) 614
Psp6I CCWGG 2 cut(s) 310, 794
PspGI CCWGG 2 cut(s) 310, 794
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 2 cut(s) 412, 699
RseI CAYNNNNRTG 1 cut(s) 36
SapI GCTCTTC 2 cut(s) 472, 829
SaqAI TTAA 2 cut(s) 582, 818
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 3 cut(s) 10, 43, 158
Sau96I GGNCC 2 cut(s) 412, 699
ScrFI CCNGG 3 cut(s) 68, 312, 796
SduI GDGCHC 2 cut(s) 238, 841
SfaNI GCATC 3 cut(s) 595, 702, 770
SfcI CTRYAG 1 cut(s) 384
SinI GGWCC 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 7 cut(s) 205, 258, 339, 397, 417, 666, 814
SsiI CCGC 3 cut(s) 263, 552, 765
SspMI CTAG 4 cut(s) 180, 198, 239, 462
StyD4I CCNGG 3 cut(s) 66, 310, 794
StyI CCWWGG 2 cut(s) 378, 576
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 705
TasI AATT 7 cut(s) 205, 258, 339, 397, 417, 666, 814
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 2 cut(s) 582, 818
Tru9I TTAA 2 cut(s) 582, 818
TscAI CASTG 2 cut(s) 31, 238
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 4 cut(s) 48, 302, 462, 674
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 2 cut(s) 31, 238
VpaK11BI GGWCC 1 cut(s) 412
XapI RAATTY 1 cut(s) 205
XspI CTAG 4 cut(s) 180, 198, 239, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.