RLG00000023391

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0013306
Physical Location & Seq
Reverse (-)
22998752 .. 23000075
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023391

Sequence Viewer

Length: 873 bp
ATGTTGAATGATCAAAGGGTTGGCACCAGCGGTGAACATGAAGATGATGATCACGGTGACGATGAGCTAGTCCGGGATATCCACGCCTTGACACCACCTCATCCTCCACAGGCTGCTAATCGTGGTGGCCGTCAAAGAGAGGCCTGGGAAACTGGTAGTCAGAGATCATCATCTCTGTCCGTGGCTAGTACTGAAGGTGCTTCTAGTGAGAATTTTACTTCCATGAGTAGAGAGTTCAGTGCTCTAGTGGTTGCAGGGTCAACAATTCCGCATAGTGGTTTTAGTAACAATGATATGAATGATAGTGCTGTAAATAATCCTGGAAACAACAACTTGGGATTGGGTAGAATTGGAGAGGAGGACAATATGCCGGAGGAGACCAATCCCTTGGCTATAGTAACAGATAATTATCACTCTTCGGACCCAATTGCTTCTCCAAGAAGTATCGGGGCTAACAATAATAACATGGCTGGCTCTTCTTCATCAAGCATGATTGGCACTAATCAAGGTGAGATTTCTGTGCATTTGGTCAAGAAGGAAGAGGTGGAATCAAAGATATCCGCGTGGCAGAACGCAAAGATTGCCAAGGTTAACAACAGGTTCAAGAGGGAGGATGCTGTTATAAATGGGTGGGAAAGTGAGCAGGTTCAGAAAGCTTCTACATGGATGAAGAAAATTGAGAGGAAGTTGGAAGAGAAAAGAGCAAGGGCCTTCGAGAAGATGCAAAATGATATAGCCAAAGCTCACAGAAAAGCAGAGGAGAGGAAGGCATCCGCTGAGGCTAAGAGAGGAACAAAAGTGGCCAGGGTTCTTGAAATAGCCAATTTAATGAGAGCTGTTGGAAGAGCACCTGCCAAAAAGTCCTTCTTCTAA

Protein Analysis

291

Amino Acids

31.74

Weight (kDa)

6.48

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 180 - 286 2.6e-31 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41870 AT3G57540
fragaria_vesca FvH4_6g23510
malus_domestica MD12G1072300.v1.1 MD14G1069500.v1.1
prunus_persica Prupe.7G064800_v2.0.a1
pyrus_communis pycom12g06070 pycom14g05760
rosa_chinensis RchiOBHm_Chr3g0481501
rosa_laevigata RLG00000023391
rosa_multiflora Rmu_sc0010846.1_g000007
rosa_roxburghii Rroxscaffold_6G00400380
rosa_rugosa Rorug03G0192300
rosa_samantha Rh3AG243500 Rh3BG278400 Rh3CG273600 Rh3DG270400
rosa_wichuraiana Rw3G021750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 623
AarI CACCTGC 1 cut(s) 859
Acc36I ACCTGC 2 cut(s) 634, 859
AccB1I GGYRCC 1 cut(s) 23
AccII CGCG 1 cut(s) 563
AciI CCGC 4 cut(s) 30, 269, 561, 774
AcoI YGGCCR 2 cut(s) 127, 801
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 3 cut(s) 7, 604, 815
AjnI CCWGG 3 cut(s) 143, 319, 803
AjuI GAANNNNNNNTTGG 1 cut(s) 848
AluBI AGCT 4 cut(s) 67, 656, 743, 836
AluI AGCT 4 cut(s) 67, 656, 743, 836
Alw21I GWGCWC 2 cut(s) 244, 850
Alw26I GTCTC 1 cut(s) 371
AoxI GGCC 4 cut(s) 127, 141, 708, 801
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 211
AspS9I GGNCC 2 cut(s) 421, 708
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 3 cut(s) 44, 68, 521
AvaII GGWCC 1 cut(s) 421
BalI TGGCCA 1 cut(s) 803
BanI GGYRCC 1 cut(s) 23
Bbv12I GWGCWC 2 cut(s) 244, 850
BbvCI CCTCAGC 1 cut(s) 777
BbvI GCAGC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 114
BciT130I CCWGG 3 cut(s) 145, 321, 805
BclI TGATCA 2 cut(s) 10, 49
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 4 cut(s) 68, 186, 204, 245
BfmI CTRYAG 1 cut(s) 393
BfuAI ACCTGC 2 cut(s) 634, 859
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmcAI AGTACT 1 cut(s) 190
Bme1390I CCNGG 4 cut(s) 74, 145, 321, 805
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 2 cut(s) 421, 708
BmiI GGNNCC 2 cut(s) 25, 423
BmrFI CCNGG 4 cut(s) 74, 145, 321, 805
BmsI GCATC 3 cut(s) 604, 711, 779
Bpu10I CCTNAGC 1 cut(s) 777
BpuMI CCSGG 1 cut(s) 74
BsaBI GATNNNNATC 3 cut(s) 48, 169, 408
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 5 cut(s) 144, 180, 387, 585, 804
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 157
Bse8I GATNNNNATC 3 cut(s) 48, 169, 408
BseBI CCWGG 3 cut(s) 145, 321, 805
BseDI CCNNGG 5 cut(s) 144, 180, 387, 585, 804
BseGI GGATG 4 cut(s) 100, 619, 672, 770
BseJI GATNNNNATC 3 cut(s) 48, 169, 408
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 768
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 3 cut(s) 371, 389, 773
BseXI GCAGC 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 563
BshFI GGCC 4 cut(s) 129, 143, 710, 803
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 244, 850
BsiSI CCGG 2 cut(s) 73, 371
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 371
BsnI GGCC 4 cut(s) 129, 143, 710, 803
Bso31I GGTCTC 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 244, 850
Bsp143I GATC 3 cut(s) 10, 49, 164
BspACI CCGC 4 cut(s) 30, 269, 561, 774
BspANI GGCC 4 cut(s) 129, 143, 710, 803
BspCNI CTCAG 1 cut(s) 769
BspFNI CGCG 1 cut(s) 563
BspLI GGNNCC 2 cut(s) 25, 423
BspMI ACCTGC 2 cut(s) 634, 859
BspQI GCTCTTC 2 cut(s) 481, 838
BspT107I GGYRCC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 371
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 5 cut(s) 144, 180, 387, 585, 804
BssMI GATC 3 cut(s) 10, 49, 164
BssT1I CCWWGG 2 cut(s) 387, 585
Bst2UI CCWGG 3 cut(s) 145, 321, 805
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 5 cut(s) 421, 481, 534, 687, 838
BstAPI GCANNNNNTGC 1 cut(s) 581
BstC8I GCNNGC 1 cut(s) 472
BstDEI CTNAG 2 cut(s) 777, 783
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 4 cut(s) 100, 619, 672, 770
BstFNI CGCG 1 cut(s) 563
BstKTI GATC 3 cut(s) 13, 52, 167
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 3 cut(s) 10, 49, 164
BstMWI GCNNNNNNNGC 2 cut(s) 495, 581
BstNI CCWGG 3 cut(s) 145, 321, 805
BstSCI CCNGG 4 cut(s) 72, 143, 319, 803
BstSFI CTRYAG 1 cut(s) 393
BstUI CGCG 1 cut(s) 563
BstV1I GCAGC 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 388
BsuRI GGCC 4 cut(s) 129, 143, 710, 803
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 4 cut(s) 100, 619, 672, 770
BtsIMutI CAGTG 1 cut(s) 244
BveI ACCTGC 2 cut(s) 634, 859
Cac8I GCNNGC 1 cut(s) 472
Cfr13I GGNCC 2 cut(s) 421, 708
Csp6I GTAC 1 cut(s) 189
CviAII CATG 5 cut(s) 38, 223, 466, 490, 663
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 2 cut(s) 777, 783
DpnI GATC 3 cut(s) 12, 51, 166
DpnII GATC 3 cut(s) 10, 49, 164
EaeI YGGCCR 2 cut(s) 127, 801
Eam1104I CTCTTC 5 cut(s) 421, 481, 534, 687, 838
EarI CTCTTC 5 cut(s) 421, 481, 534, 687, 838
Eco130I CCWWGG 2 cut(s) 387, 585
Eco147I AGGCCT 1 cut(s) 143
Eco31I GGTCTC 1 cut(s) 371
Eco32I GATATC 2 cut(s) 79, 558
Eco47I GGWCC 1 cut(s) 421
Eco57I CTGAAG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 708
EcoRII CCWGG 3 cut(s) 143, 319, 803
EcoRV GATATC 2 cut(s) 79, 558
EcoT14I CCWWGG 2 cut(s) 387, 585
ErhI CCWWGG 2 cut(s) 387, 585
FaeI CATG 5 cut(s) 41, 226, 469, 493, 666
FalI AAGNNNNNCTT 1 cut(s) 851
FatI CATG 5 cut(s) 37, 222, 465, 489, 662
FbaI TGATCA 2 cut(s) 10, 49
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 4 cut(s) 87, 626, 679, 757
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 4 cut(s) 68, 186, 204, 245
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 4 cut(s) 129, 143, 710, 803
HapII CCGG 2 cut(s) 73, 371
Hin1II CATG 5 cut(s) 41, 226, 469, 493, 666
HincII GTYRAC 2 cut(s) 261, 592
HindII GTYRAC 2 cut(s) 261, 592
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 1 cut(s) 548
HpaI GTTAAC 1 cut(s) 592
HpaII CCGG 2 cut(s) 73, 371
HphI GGTGA 3 cut(s) 44, 68, 521
Hpy166II GTNNAC 3 cut(s) 35, 261, 592
Hpy188I TCNGA 3 cut(s) 162, 421, 651
Hpy188III TCNNGA 4 cut(s) 532, 604, 715, 812
Hpy8I GTNNAC 3 cut(s) 35, 261, 592
HpyAV CCTTC 4 cut(s) 188, 529, 721, 760
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 3 cut(s) 254, 523, 724
HpyF10VI GCNNNNNNNGC 2 cut(s) 495, 581
HpyF3I CTNAG 2 cut(s) 777, 783
Hsp92II CATG 5 cut(s) 41, 226, 469, 493, 666
Ksp22I TGATCA 2 cut(s) 10, 49
KspAI GTTAAC 1 cut(s) 592
Kzo9I GATC 3 cut(s) 10, 49, 164
LguI GCTCTTC 2 cut(s) 481, 838
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 3 cut(s) 604, 711, 779
MaeI CTAG 4 cut(s) 68, 186, 204, 245
MaeIII GTNAC 3 cut(s) 56, 284, 397
MalI GATC 3 cut(s) 12, 51, 166
MboI GATC 3 cut(s) 10, 49, 164
MfeI CAATTG 1 cut(s) 426
MhlI GDGCHC 2 cut(s) 244, 850
MlsI TGGCCA 1 cut(s) 803
MluCI AATT 7 cut(s) 211, 264, 348, 406, 426, 675, 823
MluNI TGGCCA 1 cut(s) 803
MmeI TCCRAC 2 cut(s) 669, 820
Mox20I TGGCCA 1 cut(s) 803
MscI TGGCCA 1 cut(s) 803
MseI TTAA 2 cut(s) 591, 827
MslI CAYNNNNRTG 1 cut(s) 42
Msp20I TGGCCA 1 cut(s) 803
MspA1I CMGCKG 2 cut(s) 30, 776
MspI CCGG 2 cut(s) 73, 371
MspR9I CCNGG 4 cut(s) 74, 145, 321, 805
MunI CAATTG 1 cut(s) 426
MvaI CCWGG 3 cut(s) 145, 321, 805
MvnI CGCG 1 cut(s) 563
MwoI GCNNNNNNNGC 2 cut(s) 495, 581
NciI CCSGG 1 cut(s) 74
NdeII GATC 3 cut(s) 10, 49, 164
NlaIII CATG 5 cut(s) 41, 226, 469, 493, 666
NlaIV GGNNCC 2 cut(s) 25, 423
NmuCI GTSAC 1 cut(s) 56
PaqCI CACCTGC 1 cut(s) 859
PceI AGGCCT 1 cut(s) 143
PciSI GCTCTTC 2 cut(s) 481, 838
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PfeI GAWTC 1 cut(s) 548
PfoI TCCNGGA 2 cut(s) 72, 319
PkrI GCNGC 1 cut(s) 115
PsiI TTATAA 1 cut(s) 623
Psp6I CCWGG 3 cut(s) 143, 319, 803
PspGI CCWGG 3 cut(s) 143, 319, 803
PspN4I GGNNCC 2 cut(s) 25, 423
PspPI GGNCC 2 cut(s) 421, 708
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 42
SapI GCTCTTC 2 cut(s) 481, 838
SaqAI TTAA 2 cut(s) 591, 827
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 3 cut(s) 10, 49, 164
Sau96I GGNCC 2 cut(s) 421, 708
ScaI AGTACT 1 cut(s) 190
ScrFI CCNGG 4 cut(s) 74, 145, 321, 805
SduI GDGCHC 2 cut(s) 244, 850
SfaNI GCATC 3 cut(s) 604, 711, 779
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 42
Sse9I AATT 7 cut(s) 211, 264, 348, 406, 426, 675, 823
SseBI AGGCCT 1 cut(s) 143
SsiI CCGC 4 cut(s) 30, 269, 561, 774
SspMI CTAG 4 cut(s) 68, 186, 204, 245
StuI AGGCCT 1 cut(s) 143
StyD4I CCNGG 4 cut(s) 72, 143, 319, 803
StyI CCWWGG 2 cut(s) 387, 585
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 714
TasI AATT 7 cut(s) 211, 264, 348, 406, 426, 675, 823
TatI WGTACW 1 cut(s) 188
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 2 cut(s) 591, 827
Tru9I TTAA 2 cut(s) 591, 827
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 4 cut(s) 54, 311, 471, 683
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 421
XapI RAATTY 1 cut(s) 211
XspI CTAG 4 cut(s) 68, 186, 204, 245
ZrmI AGTACT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.