AT2G42080

Contains the following InterPro domains Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro IPR015609), Heat shock protein DnaJ, N-terminal (InterPro IPR001623)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009153
Physical Location & Seq
Reverse (-)
17553204 .. 17555673
2470 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42080.1

Sequence Viewer

Length: 792 bp
ATGAACGCCGCCATTAGAGCAGCGATTCTCCGACCACAAAGCTATTCTTCTCAGCTCAAAACCGCGTTTTTTCATTCAACTCCTGTCTTAGAACGCAAACGTCGCACTTCCTGGGAATCGAAAGCAAATGTTCACAAGAAGAGGTTCAGAAGAATGAGGGAAAAGCAAGAGTTATTGCGTAATGTCAATGCTTTTGCTGCAAACATGTTTACGAGCTGGCATGATGAGTTTGATGACGATGGTCCCTCATCCCGGAAGCAAACCTCGTGGTTCAAAAAACAGTACTCCAAGGAACCCAAAGGAAACCAGAATAACAAACACGGCCCCTACACTTGGGGTAAAAGGAATTTTGATTTTTGCGAAGTTGATGAGGACTTTGATGTCGACTATGTATTCCGAACTGCTTTTGGAGGATCCCGAGGTTTCTCTTTTTCATTCACTCATGAAGAGGATGAACCTCGATGGCGGCATCACTCTTCAAGGTTTTCCAACAACTCTAACAGGTCTTGGAGATCGAAATATCGGTTAGATGAAGATGAAGAAGAAGAAGACTATACTTCAGACTCCAGTGACTCTGAGTCTGAGCCAAACCAAGTTTCTCATAGACAAGCACTTGGCCTGAGTCCCTCAGGTCCCTTAAACCTTAAAGATGTCAAACATGCGTATCGAACTTGTGCATTAAAATGGCATCCAGATCGTCATCAAGGCTCTACCAAGGAGGCGGCTGAAGCAAAGTTCAAGCTCTGCAGTGTGGCTTATCAATCTTTATGTGAAAAGCTATCTGTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

263

Amino Acids

30.84

Weight (kDa)

9.04

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 205 - 258 5.3e-10 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
AccI GTMKAC 1 cut(s) 384
AccII CGCG 1 cut(s) 65
AciI CCGC 4 cut(s) 9, 63, 466, 722
AclWI GGATC 2 cut(s) 408, 421
AcsI RAATTY 1 cut(s) 346
AcuI CTGAAG 2 cut(s) 543, 747
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 252, 333
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 4 cut(s) 78, 274, 480, 739
AhdI GACNNNNNGTC 1 cut(s) 577
AjnI CCWGG 1 cut(s) 110
AjuI GAANNNNNNNTTGG 2 cut(s) 580, 612
AluBI AGCT 5 cut(s) 42, 55, 216, 742, 778
AluI AGCT 5 cut(s) 42, 55, 216, 742, 778
AlwI GGATC 2 cut(s) 408, 421
Ama87I CYCGRG 1 cut(s) 417
AoxI GGCC 2 cut(s) 322, 616
ApeKI GCWGC 2 cut(s) 20, 197
ApoI RAATTY 1 cut(s) 346
Asp700I GAANNNNTTC 1 cut(s) 143
AspS9I GGNCC 3 cut(s) 242, 323, 632
AsuC2I CCSGG 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 417
AvaII GGWCC 2 cut(s) 242, 632
AxyI CCTNAGG 1 cut(s) 628
BaeI ACNNNNGTAYC 2 cut(s) 647, 680
BamHI GGATCC 1 cut(s) 413
BauI CACGAG 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 555
BbvI GCAGC 2 cut(s) 32, 184
BccI CCATC 2 cut(s) 233, 456
BceAI ACGGC 1 cut(s) 337
BcgI CGANNNNNNTGC 2 cut(s) 677, 711
BciT130I CCWGG 1 cut(s) 112
BcnI CCSGG 1 cut(s) 253
BfmI CTRYAG 1 cut(s) 745
BisI GCNGC 5 cut(s) 9, 21, 198, 467, 723
BlsI GCNGC 5 cut(s) 10, 22, 199, 468, 724
BmcAI AGTACT 1 cut(s) 284
Bme1390I CCNGG 2 cut(s) 112, 253
Bme18I GGWCC 2 cut(s) 242, 632
BmeRI GACNNNNNGTC 1 cut(s) 577
BmeT110I CYCGRG 1 cut(s) 417
BmgT120I GGNCC 3 cut(s) 242, 323, 632
BmiI GGNNCC 5 cut(s) 244, 294, 325, 415, 634
BmrFI CCNGG 2 cut(s) 112, 253
BmsI GCATC 2 cut(s) 478, 697
BoxI GACNNNNGTC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 555
BpmI CTGGAG 1 cut(s) 550
BpuMI CCSGG 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 699
BsaJI CCNNGG 4 cut(s) 111, 288, 418, 714
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 333
Bse1I ACTGG 1 cut(s) 567
Bse21I CCTNAGG 1 cut(s) 628
Bse8I GATNNNNATC 1 cut(s) 699
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 4 cut(s) 111, 288, 418, 714
BseGI GGATG 3 cut(s) 248, 457, 688
BseJI GATNNNNATC 1 cut(s) 699
BseLI CCNNNNNNNGG 2 cut(s) 252, 333
BseMII CTCAG 5 cut(s) 65, 567, 573, 611, 642
BseNI ACTGG 1 cut(s) 567
BseXI GCAGC 2 cut(s) 32, 184
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 2 cut(s) 324, 618
BsiHKCI CYCGRG 1 cut(s) 417
BsiSI CCGG 1 cut(s) 253
BslFI GGGAC 3 cut(s) 228, 609, 618
BslI CCNNNNNNNGG 2 cut(s) 252, 333
BsmFI GGGAC 3 cut(s) 228, 609, 618
BsnI GGCC 2 cut(s) 324, 618
BsoBI CYCGRG 1 cut(s) 417
Bsp143I GATC 3 cut(s) 413, 512, 694
BspACI CCGC 4 cut(s) 9, 63, 466, 722
BspANI GGCC 2 cut(s) 324, 618
BspCNI CTCAG 5 cut(s) 64, 568, 574, 612, 641
BspFNI CGCG 1 cut(s) 65
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 5 cut(s) 244, 294, 325, 415, 634
BspMAI CTGCAG 1 cut(s) 749
BspPI GGATC 2 cut(s) 408, 421
BsrI ACTGG 1 cut(s) 567
BssECI CCNNGG 4 cut(s) 111, 288, 418, 714
BssMI GATC 3 cut(s) 413, 512, 694
BssSI CACGAG 1 cut(s) 265
BssT1I CCWWGG 2 cut(s) 288, 714
Bst2BI CACGAG 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 282
Bst6I CTCTTC 3 cut(s) 134, 441, 481
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 6 cut(s) 51, 88, 576, 582, 620, 628
BstF5I GGATG 3 cut(s) 248, 457, 688
BstFNI CGCG 1 cut(s) 65
BstKTI GATC 3 cut(s) 416, 515, 697
BstMBI GATC 3 cut(s) 413, 512, 694
BstMWI GCNNNNNNNGC 4 cut(s) 17, 102, 197, 728
BstNI CCWGG 1 cut(s) 112
BstNSI RCATGY 2 cut(s) 208, 662
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 110, 251
BstSFI CTRYAG 1 cut(s) 745
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 32, 184
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 1 cut(s) 413
BstYI RGATCY 1 cut(s) 413
Bsu36I CCTNAGG 1 cut(s) 628
BsuRI GGCC 2 cut(s) 324, 618
BtsCI GGATG 3 cut(s) 248, 457, 688
BtsI GCAGTG 1 cut(s) 754
BtsIMutI CAGTG 2 cut(s) 574, 754
Cac8I GCNNGC 1 cut(s) 218
CciI TCATGA 1 cut(s) 442
Cfr13I GGNCC 3 cut(s) 242, 323, 632
Csp6I GTAC 1 cut(s) 283
CspCI CAANNNNNGTGG 2 cut(s) 248, 283
CviAII CATG 4 cut(s) 205, 221, 443, 659
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 6 cut(s) 51, 88, 576, 582, 620, 628
DpnI GATC 3 cut(s) 415, 514, 696
DpnII GATC 3 cut(s) 413, 512, 694
DrdI GACNNNNNNGTC 1 cut(s) 380
DriI GACNNNNNGTC 1 cut(s) 577
DseDI GACNNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 3 cut(s) 134, 441, 481
Eam1105I GACNNNNNGTC 1 cut(s) 577
EarI CTCTTC 3 cut(s) 134, 441, 481
Eco130I CCWWGG 2 cut(s) 288, 714
Eco47I GGWCC 2 cut(s) 242, 632
Eco57I CTGAAG 2 cut(s) 543, 747
Eco81I CCTNAGG 1 cut(s) 628
Eco88I CYCGRG 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 2 cut(s) 288, 714
ErhI CCWWGG 2 cut(s) 288, 714
FaeI CATG 4 cut(s) 208, 224, 446, 662
FaiI YATR 8 cut(s) 206, 222, 390, 444, 555, 603, 660, 769
FalI AAGNNNNNCTT 2 cut(s) 31, 63
FaqI GGGAC 3 cut(s) 228, 609, 618
FatI CATG 4 cut(s) 204, 220, 442, 658
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 5 cut(s) 9, 21, 198, 467, 723
FokI GGATG 3 cut(s) 235, 464, 675
Fsp4HI GCNGC 5 cut(s) 9, 21, 198, 467, 723
GluI GCNGC 5 cut(s) 9, 21, 198, 467, 723
GsuI CTGGAG 1 cut(s) 550
HaeIII GGCC 2 cut(s) 324, 618
HapII CCGG 1 cut(s) 253
Hin1II CATG 4 cut(s) 208, 224, 446, 662
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HinfI GANTC 6 cut(s) 25, 116, 563, 572, 578, 622
HpaII CCGG 1 cut(s) 253
Hpy166II GTNNAC 4 cut(s) 133, 210, 385, 787
Hpy188I TCNGA 6 cut(s) 32, 149, 398, 562, 577, 583
Hpy188III TCNNGA 3 cut(s) 417, 443, 692
Hpy8I GTNNAC 4 cut(s) 133, 210, 385, 787
Hpy99I CGWCG 1 cut(s) 105
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 3 cut(s) 200, 677, 747
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 102, 197, 728
HpyF3I CTNAG 6 cut(s) 51, 88, 576, 582, 620, 628
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 4 cut(s) 208, 224, 446, 662
Kzo9I GATC 3 cut(s) 413, 512, 694
Lsp1109I GCAGC 2 cut(s) 32, 184
LweI GCATC 2 cut(s) 478, 697
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 569
MalI GATC 3 cut(s) 415, 514, 696
MboI GATC 3 cut(s) 413, 512, 694
MflI RGATCY 1 cut(s) 413
MluCI AATT 1 cut(s) 346
MlyI GAGTC 4 cut(s) 557, 566, 587, 631
MmeI TCCRAC 2 cut(s) 55, 513
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 3 cut(s) 638, 645, 680
MslI CAYNNNNRTG 1 cut(s) 682
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 2 cut(s) 112, 253
MvaI CCWGG 1 cut(s) 112
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 4 cut(s) 17, 102, 197, 728
NciI CCSGG 1 cut(s) 253
NdeII GATC 3 cut(s) 413, 512, 694
NlaIII CATG 4 cut(s) 208, 224, 446, 662
NlaIV GGNNCC 5 cut(s) 244, 294, 325, 415, 634
NmuCI GTSAC 1 cut(s) 569
NspI RCATGY 2 cut(s) 208, 662
PagI TCATGA 1 cut(s) 442
PciI ACATGT 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 2 cut(s) 25, 116
PfoI TCCNGGA 1 cut(s) 251
PkrI GCNGC 5 cut(s) 10, 22, 199, 468, 724
PleI GAGTC 4 cut(s) 557, 566, 586, 630
PpsI GAGTC 4 cut(s) 557, 566, 586, 630
PpuMI RGGWCCY 1 cut(s) 632
PscI ACATGT 1 cut(s) 204
PshAI GACNNNNGTC 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 5 cut(s) 244, 294, 325, 415, 634
PspPI GGNCC 3 cut(s) 242, 323, 632
PspPPI RGGWCCY 1 cut(s) 632
PstI CTGCAG 1 cut(s) 749
PsuI RGATCY 1 cut(s) 413
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 682
SalI GTCGAC 1 cut(s) 383
SaqAI TTAA 3 cut(s) 638, 645, 680
SatI GCNGC 5 cut(s) 9, 21, 198, 467, 723
Sau3AI GATC 3 cut(s) 413, 512, 694
Sau96I GGNCC 3 cut(s) 242, 323, 632
ScaI AGTACT 1 cut(s) 284
SchI GAGTC 4 cut(s) 557, 566, 587, 631
ScrFI CCNGG 2 cut(s) 112, 253
SfaNI GCATC 2 cut(s) 478, 697
SfcI CTRYAG 1 cut(s) 745
SinI GGWCC 2 cut(s) 242, 632
SmiMI CAYNNNNRTG 1 cut(s) 682
Sse9I AATT 1 cut(s) 346
SsiI CCGC 4 cut(s) 9, 63, 466, 722
StyD4I CCNGG 2 cut(s) 110, 251
StyI CCWWGG 2 cut(s) 288, 714
TaaI ACNGT 1 cut(s) 282
TaiI ACGT 1 cut(s) 103
TaqI TCGA 5 cut(s) 119, 384, 460, 515, 667
TasI AATT 1 cut(s) 346
TatI WGTACW 1 cut(s) 282
TauI GCSGC 3 cut(s) 11, 469, 725
TfiI GAWTC 2 cut(s) 25, 116
Tru1I TTAA 3 cut(s) 638, 645, 680
Tru9I TTAA 3 cut(s) 638, 645, 680
TscAI CASTG 2 cut(s) 574, 754
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 2 cut(s) 20, 197
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 7 cut(s) 17, 62, 423, 459, 468, 546, 552
TspRI CASTG 2 cut(s) 574, 754
VpaK11BI GGWCC 2 cut(s) 242, 632
XapI RAATTY 1 cut(s) 346
XceI RCATGY 2 cut(s) 208, 662
XmiI GTMKAC 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 143
ZrmI AGTACT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.