RchiOBHm_Chr3g0479541

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0009153
Physical Location & Seq
Reverse (-)
25379868 .. 25384172
4305 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44462

Sequence Viewer

Length: 759 bp
ATGAACAGCGCGATGAAAACGGCTCTCCTAAACTCAAAACTGAACTACTCGAATTATGTGAGGAGTGCCCTGTTTCATTCAACCCCTGTGTTGGATCGTAAAAGACGCAACAACAACTGGGAATCATTTAGAAGCCACAACTATTCAAAAAGGTCCAGAAGGATACATGCAAAACAAACATTATTGCGCAATGTCAATGATTATGCAGACTTCCTATTTCAGAAATGGCAGAATCCGTATGATTTGAACGAGCCATCTTCAAATAGAGGCACTTCATGGTTTAAAAAGCAATACTCAGCGAAGGGCTCCAAAAAGAAATGGGGAAGCAATCAAGGAGCCTCCAGCTGGGGCAGAAGTTTCGAGTTTTGTGAAGATTATGTAGATGTAGAGACCATTTTCCAGTCCAGGTTTGGTGGGAGTGGATTCTTTTACTGGTCATTTGTCAATGAAGATGATTCACAGCGGAGAAGCTCTTCAAATTACTCTAATCACTCTGGGAGATCATGGAGTTGGAGACATCGTAATGAGGAACAATACGAATCTGAGTCTGACGATTCGGAGTCAGATGAGAGGTTGGCCCTTGGATTGAGTGCTGCAGGCCCTCTGAAACTTGAAGATGTCAAAAATGCATATCGAACCTGTGCACTGAAATGGCATCCAGATCGTCACCAGGGCTCTTCCAAGGCTGCTGCAGAGGAAAAGTTCAAGCATTGCAGCGCAGCTTATCAATCTTTATGTGATAAATTGGCTGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

252

Amino Acids

29.32

Weight (kDa)

9.39

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 203 - 248 2.7e-11 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 188
AccII CGCG 1 cut(s) 11
AciI CCGC 1 cut(s) 463
AclWI GGATC 1 cut(s) 102
AfiI CCNNNNNNNGG 2 cut(s) 91, 345
AgsI TTSAA 7 cut(s) 81, 147, 247, 261, 477, 614, 706
AjnI CCWGG 2 cut(s) 404, 669
AluBI AGCT 3 cut(s) 345, 471, 722
AluI AGCT 3 cut(s) 345, 471, 722
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 2 cut(s) 383, 508
Alw44I GTGCAC 1 cut(s) 642
AlwI GGATC 1 cut(s) 102
AoxI GGCC 2 cut(s) 576, 598
ApaLI GTGCAC 1 cut(s) 642
ApeKI GCWGC 5 cut(s) 593, 686, 689, 714, 719
Asp700I GAANNNNTTC 1 cut(s) 472
AspLEI GCGC 3 cut(s) 11, 189, 719
AspS9I GGNCC 3 cut(s) 153, 577, 599
AsuHPI GGTGA 1 cut(s) 659
AvaII GGWCC 1 cut(s) 153
BaeGI GKGCMC 2 cut(s) 70, 646
BanII GRGCYC 2 cut(s) 308, 677
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 5 cut(s) 580, 673, 676, 726, 731
BccI CCATC 1 cut(s) 262
BceAI ACGGC 1 cut(s) 36
BcgI CGANNNNNNTGC 4 cut(s) 340, 374, 644, 678
BciT130I CCWGG 2 cut(s) 406, 671
BciVI GTATCC 1 cut(s) 156
BcoDI GTCTC 2 cut(s) 383, 508
BfmI CTRYAG 2 cut(s) 594, 690
BfuI GTATCC 1 cut(s) 156
BisI GCNGC 5 cut(s) 594, 687, 690, 715, 720
BlsI GCNGC 5 cut(s) 595, 688, 691, 716, 721
Bme1390I CCNGG 2 cut(s) 406, 671
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 3 cut(s) 153, 577, 599
BmiI GGNNCC 2 cut(s) 307, 337
BmrFI CCNGG 2 cut(s) 406, 671
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 664
BmuI ACTGGG 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 325
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 3 cut(s) 580, 670, 681
BsaXI ACNNNNNCTCC 2 cut(s) 505, 535
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 345
Bse1I ACTGG 3 cut(s) 122, 400, 437
Bse3DI GCAATG 2 cut(s) 196, 709
BseBI CCWGG 2 cut(s) 406, 671
BseDI CCNNGG 3 cut(s) 580, 670, 681
BseGI GGATG 1 cut(s) 655
BseLI CCNNNNNNNGG 2 cut(s) 91, 345
BseMI GCAATG 2 cut(s) 196, 709
BseMII CTCAG 2 cut(s) 309, 534
BseNI ACTGG 3 cut(s) 122, 400, 437
BseRI GAGGAG 1 cut(s) 76
BseSI GKGCMC 2 cut(s) 70, 646
BseXI GCAGC 5 cut(s) 580, 673, 676, 726, 731
BseYI CCCAGC 1 cut(s) 345
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 578, 600
BsiHKAI GWGCWC 1 cut(s) 646
BslI CCNNNNNNNGG 2 cut(s) 91, 345
BsmAI GTCTC 2 cut(s) 383, 508
BsnI GGCC 2 cut(s) 578, 600
Bso31I GGTCTC 1 cut(s) 383
Bsp1286I GDGCHC 4 cut(s) 70, 308, 646, 677
Bsp143I GATC 3 cut(s) 94, 500, 661
BspACI CCGC 1 cut(s) 463
BspANI GGCC 2 cut(s) 578, 600
BspCNI CTCAG 2 cut(s) 308, 535
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 2 cut(s) 307, 337
BspMAI CTGCAG 2 cut(s) 598, 694
BspPI GGATC 1 cut(s) 102
BspQI GCTCTTC 2 cut(s) 478, 682
BspTNI GGTCTC 1 cut(s) 383
BsrDI GCAATG 2 cut(s) 196, 709
BsrI ACTGG 3 cut(s) 122, 400, 437
BssECI CCNNGG 3 cut(s) 580, 670, 681
BssMI GATC 3 cut(s) 94, 500, 661
BssT1I CCWWGG 2 cut(s) 580, 681
Bst2UI CCWGG 2 cut(s) 406, 671
Bst6I CTCTTC 2 cut(s) 478, 682
BstC8I GCNNGC 1 cut(s) 598
BstDEI CTNAG 2 cut(s) 295, 543
BstF5I GGATG 1 cut(s) 655
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 3 cut(s) 11, 189, 719
BstKTI GATC 3 cut(s) 97, 503, 664
BstMAI GTCTC 2 cut(s) 383, 508
BstMBI GATC 3 cut(s) 94, 500, 661
BstNI CCWGG 2 cut(s) 406, 671
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 404, 669
BstSFI CTRYAG 2 cut(s) 594, 690
BstSLI GKGCMC 2 cut(s) 70, 646
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 5 cut(s) 580, 673, 676, 726, 731
BsuI GTATCC 1 cut(s) 156
BsuRI GGCC 2 cut(s) 578, 600
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 1 cut(s) 655
BtsIMutI CAGTG 1 cut(s) 644
Cac8I GCNNGC 1 cut(s) 598
CfoI GCGC 3 cut(s) 11, 189, 719
Cfr13I GGNCC 3 cut(s) 153, 577, 599
CseI GACGC 1 cut(s) 114
CviAII CATG 3 cut(s) 167, 276, 504
DdeI CTNAG 2 cut(s) 295, 543
DpnI GATC 3 cut(s) 96, 502, 663
DpnII GATC 3 cut(s) 94, 500, 661
DraI TTTAAA 1 cut(s) 283
Eam1104I CTCTTC 2 cut(s) 478, 682
EarI CTCTTC 2 cut(s) 478, 682
Eco130I CCWWGG 2 cut(s) 580, 681
Eco24I GRGCYC 2 cut(s) 308, 677
Eco31I GGTCTC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 599
EcoRII CCWGG 2 cut(s) 404, 669
EcoT14I CCWWGG 2 cut(s) 580, 681
EcoT22I ATGCAT 1 cut(s) 631
EcoT38I GRGCYC 2 cut(s) 308, 677
ErhI CCWWGG 2 cut(s) 580, 681
FaeI CATG 3 cut(s) 170, 279, 507
FaiI YATR 9 cut(s) 57, 168, 204, 240, 277, 378, 505, 631, 736
FatI CATG 3 cut(s) 166, 275, 503
Fnu4HI GCNGC 5 cut(s) 594, 687, 690, 715, 720
FokI GGATG 1 cut(s) 642
FriOI GRGCYC 2 cut(s) 308, 677
Fsp4HI GCNGC 5 cut(s) 594, 687, 690, 715, 720
FspI TGCGCA 1 cut(s) 188
GlaI GCGC 3 cut(s) 10, 188, 718
GluI GCNGC 5 cut(s) 594, 687, 690, 715, 720
GsaI CCCAGC 1 cut(s) 349
GsuI CTGGAG 1 cut(s) 325
HaeIII GGCC 2 cut(s) 578, 600
HgaI GACGC 1 cut(s) 114
HhaI GCGC 3 cut(s) 11, 189, 719
Hin1II CATG 3 cut(s) 170, 279, 507
Hin6I GCGC 3 cut(s) 9, 187, 717
HinP1I GCGC 3 cut(s) 9, 187, 717
HinfI GANTC 8 cut(s) 122, 232, 423, 455, 539, 545, 554, 560
HphI GGTGA 1 cut(s) 659
Hpy166II GTNNAC 1 cut(s) 644
Hpy188I TCNGA 6 cut(s) 222, 544, 550, 559, 565, 606
Hpy188III TCNNGA 2 cut(s) 156, 659
Hpy8I GTNNAC 1 cut(s) 644
HpyAV CCTTC 2 cut(s) 153, 295
HpyCH4V TGCA 7 cut(s) 170, 206, 596, 629, 644, 692, 714
HpyF3I CTNAG 2 cut(s) 295, 543
Hsp92II CATG 3 cut(s) 170, 279, 507
HspAI GCGC 3 cut(s) 9, 187, 717
Kzo9I GATC 3 cut(s) 94, 500, 661
LguI GCTCTTC 2 cut(s) 478, 682
LmnI GCTCC 2 cut(s) 311, 335
Lsp1109I GCAGC 5 cut(s) 580, 673, 676, 726, 731
LweI GCATC 1 cut(s) 664
MaeIII GTNAC 1 cut(s) 665
MalI GATC 3 cut(s) 96, 502, 663
MboI GATC 3 cut(s) 94, 500, 661
MboII GAAGA 6 cut(s) 249, 383, 461, 465, 626, 669
MhlI GDGCHC 4 cut(s) 70, 308, 646, 677
MluCI AATT 4 cut(s) 52, 478, 743, 754
MlyI GAGTC 2 cut(s) 554, 569
MmeI TCCRAC 2 cut(s) 72, 491
MnlI CCTC 7 cut(s) 54, 260, 349, 520, 564, 612, 688
Mph1103I ATGCAT 1 cut(s) 631
MroXI GAANNNNTTC 1 cut(s) 472
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 2 cut(s) 522, 649
MspA1I CMGCKG 2 cut(s) 345, 463
MspR9I CCNGG 2 cut(s) 406, 671
MvaI CCWGG 2 cut(s) 406, 671
MvnI CGCG 1 cut(s) 11
NdeII GATC 3 cut(s) 94, 500, 661
NlaIII CATG 3 cut(s) 170, 279, 507
NlaIV GGNNCC 2 cut(s) 307, 337
NmuCI GTSAC 1 cut(s) 665
NsbI TGCGCA 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 631
NspI RCATGY 1 cut(s) 170
PciSI GCTCTTC 2 cut(s) 478, 682
PdmI GAANNNNTTC 1 cut(s) 472
PfeI GAWTC 6 cut(s) 122, 232, 423, 455, 539, 554
PkrI GCNGC 5 cut(s) 595, 688, 691, 716, 721
PleI GAGTC 2 cut(s) 553, 568
PpsI GAGTC 2 cut(s) 553, 568
Psp6I CCWGG 2 cut(s) 404, 669
PspFI CCCAGC 1 cut(s) 345
PspGI CCWGG 2 cut(s) 404, 669
PspN4I GGNNCC 2 cut(s) 307, 337
PspPI GGNCC 3 cut(s) 153, 577, 599
PstI CTGCAG 2 cut(s) 598, 694
PvuII CAGCTG 1 cut(s) 345
RseI CAYNNNNRTG 2 cut(s) 522, 649
SapI GCTCTTC 2 cut(s) 478, 682
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 5 cut(s) 594, 687, 690, 715, 720
Sau3AI GATC 3 cut(s) 94, 500, 661
Sau96I GGNCC 3 cut(s) 153, 577, 599
SchI GAGTC 2 cut(s) 554, 569
ScrFI CCNGG 2 cut(s) 406, 671
SduI GDGCHC 4 cut(s) 70, 308, 646, 677
SetI ASST 7 cut(s) 155, 347, 410, 473, 575, 641, 724
SfaNI GCATC 1 cut(s) 664
SfcI CTRYAG 2 cut(s) 594, 690
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 2 cut(s) 522, 649
Sse9I AATT 4 cut(s) 52, 478, 743, 754
SsiI CCGC 1 cut(s) 463
StyD4I CCNGG 2 cut(s) 404, 669
StyI CCWWGG 2 cut(s) 580, 681
TaqI TCGA 3 cut(s) 50, 360, 634
TasI AATT 4 cut(s) 52, 478, 743, 754
TfiI GAWTC 6 cut(s) 122, 232, 423, 455, 539, 554
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 651
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 5 cut(s) 593, 686, 689, 714, 719
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 5 cut(s) 17, 29, 65, 264, 462
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 1 cut(s) 651
VneI GTGCAC 1 cut(s) 642
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 1 cut(s) 170
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 472
Zsp2I ATGCAT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.