Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005275.1

Orthogroup ID

OG0009153

Physical Location & Seq

Genomic Coordinates Forward (+)

1977 .. 5892

Gene Structure 3916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005275.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgagaacggctctcctaaactcaaaactgaactactcgatttatgtgaggagtgccctgtttcattcaacccccgtgttggatcgtaaaagacgcaacaacaactgggaatcatttagaaaccacaactattcaaaaaggtccagaaggatacatgcaaaacaaacattattgcgcaatgtcaatgattatgcagacttcctatttcagaaatggcaggatccgtatgatttgaacgaaccatcttcaaatagaggcacttcatggtttaaaaagcaatactcagcgaagggctccaaaaagaaatggggaagcaatcaaggagcctccagccggggcagaagaggtttcgagttttatgaagaatatgtagatgtacggaccattttttactggtcatttgtcaatgaagatgattcacagtggagaagctcttcaaattactctaatcactctgggagatcatggagttggagacatcgtaatgaggaacaatatgaatctgagtctgacgattcggagtcagatgagaggttggcccttggattgagtgctgcaggccctctgaaacttgaagatgtcaaaaatgcatatcgaacctgtgcactgaaatggcatccagatcgtcaccagggctcttccaaggctgctgcagaggaaaagttcaagcattgcagcgcagcttatcaatctttatgtgataaattggctgtgaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

239

Amino Acids

28.12

Weight (kDa)

9.51

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42080 AT3G58020
fragaria_vesca	FvH4_6g22210 FvH4_6g22210 FvH4_6g22210
malus_domestica	MD12G1056800.v1.1 MD14G1056500.v1.1
prunus_persica	Prupe.7G077400_v2.0.a1
pyrus_communis	pycom12g05080 pycom14g04630
rosa_chinensis	RchiOBHm_Chr3g0479541
rosa_laevigata	RLG00000023560
rosa_multiflora	Rmu_sc0005275.1_g000002 Rmu_sc0021516.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402150
rosa_rugosa	Rorug03G0176400 Rorug03G0176500
rosa_samantha	Rh3AG227200 Rh3BG260400 Rh3CG257200 Rh3DG252800
rosa_wichuraiana	Rw3G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	176
AclWI	GGATC	3 cut(s)	90, 215, 228
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	2 cut(s)	79, 333
AgsI	TTSAA	7 cut(s)	69, 135, 235, 249, 438, 575, 667
AjnI	CCWGG	1 cut(s)	630
AluBI	AGCT	2 cut(s)	432, 683
AluI	AGCT	2 cut(s)	432, 683
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	1 cut(s)	469
Alw44I	GTGCAC	1 cut(s)	603
AlwI	GGATC	3 cut(s)	90, 215, 228
AoxI	GGCC	2 cut(s)	537, 559
ApaLI	GTGCAC	1 cut(s)	603
ApeKI	GCWGC	5 cut(s)	554, 647, 650, 675, 680
Asp700I	GAANNNNTTC	1 cut(s)	433
AspLEI	GCGC	2 cut(s)	177, 680
AspS9I	GGNCC	4 cut(s)	141, 381, 538, 560
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	620
AvaII	GGWCC	2 cut(s)	141, 381
BaeGI	GKGCMC	2 cut(s)	58, 607
BamHI	GGATCC	1 cut(s)	220
BanII	GRGCYC	2 cut(s)	296, 638
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	5 cut(s)	541, 634, 637, 687, 692
BccI	CCATC	1 cut(s)	250
BceAI	ACGGC	1 cut(s)	24
BcgI	CGANNNNNNTGC	2 cut(s)	605, 639
BciT130I	CCWGG	1 cut(s)	632
BciVI	GTATCC	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	469
BfmI	CTRYAG	2 cut(s)	555, 651
BfuI	GTATCC	1 cut(s)	144
BisI	GCNGC	5 cut(s)	555, 648, 651, 676, 681
BlsI	GCNGC	5 cut(s)	556, 649, 652, 677, 682
Bme1390I	CCNGG	2 cut(s)	335, 632
Bme18I	GGWCC	2 cut(s)	141, 381
BmgT120I	GGNCC	4 cut(s)	141, 381, 538, 560
BmiI	GGNNCC	3 cut(s)	222, 295, 325
BmrFI	CCNGG	2 cut(s)	335, 632
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	625
BmuI	ACTGGG	1 cut(s)	115
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	313
BpuMI	CCSGG	1 cut(s)	335
BsaJI	CCNNGG	4 cut(s)	334, 541, 631, 642
BsaXI	ACNNNNNCTCC	2 cut(s)	466, 496
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 333
Bse1I	ACTGG	2 cut(s)	110, 398
Bse3DI	GCAATG	2 cut(s)	184, 670
BseBI	CCWGG	1 cut(s)	632
BseDI	CCNNGG	4 cut(s)	334, 541, 631, 642
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	2 cut(s)	79, 333
BseMI	GCAATG	2 cut(s)	184, 670
BseMII	CTCAG	2 cut(s)	297, 495
BseNI	ACTGG	2 cut(s)	110, 398
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	2 cut(s)	58, 607
BseXI	GCAGC	5 cut(s)	541, 634, 637, 687, 692
BshFI	GGCC	2 cut(s)	539, 561
BsiHKAI	GWGCWC	1 cut(s)	607
BsiSI	CCGG	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	79, 333
BsmAI	GTCTC	1 cut(s)	469
BsnI	GGCC	2 cut(s)	539, 561
Bsp1286I	GDGCHC	4 cut(s)	58, 296, 607, 638
Bsp143I	GATC	4 cut(s)	82, 220, 461, 622
BspANI	GGCC	2 cut(s)	539, 561
BspCNI	CTCAG	2 cut(s)	296, 496
BspLI	GGNNCC	3 cut(s)	222, 295, 325
BspMAI	CTGCAG	2 cut(s)	559, 655
BspPI	GGATC	3 cut(s)	90, 215, 228
BspQI	GCTCTTC	2 cut(s)	439, 643
BsrDI	GCAATG	2 cut(s)	184, 670
BsrI	ACTGG	2 cut(s)	110, 398
BssECI	CCNNGG	4 cut(s)	334, 541, 631, 642
BssMI	GATC	4 cut(s)	82, 220, 461, 622
BssT1I	CCWWGG	2 cut(s)	541, 642
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	1 cut(s)	423
Bst6I	CTCTTC	3 cut(s)	337, 439, 643
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	2 cut(s)	283, 504
BstF5I	GGATG	1 cut(s)	616
BstHHI	GCGC	2 cut(s)	177, 680
BstKTI	GATC	4 cut(s)	85, 223, 464, 625
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	4 cut(s)	82, 220, 461, 622
BstNI	CCWGG	1 cut(s)	632
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	333, 630
BstSFI	CTRYAG	2 cut(s)	555, 651
BstSLI	GKGCMC	2 cut(s)	58, 607
BstV1I	GCAGC	5 cut(s)	541, 634, 637, 687, 692
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuI	GTATCC	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	539, 561
BtsCI	GGATG	1 cut(s)	616
BtsIMutI	CAGTG	2 cut(s)	428, 605
Cac8I	GCNNGC	1 cut(s)	559
CfoI	GCGC	2 cut(s)	177, 680
Cfr13I	GGNCC	4 cut(s)	141, 381, 538, 560
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	3 cut(s)	155, 264, 465
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	2 cut(s)	283, 504
DpnI	GATC	4 cut(s)	84, 222, 463, 624
DpnII	GATC	4 cut(s)	82, 220, 461, 622
DraI	TTTAAA	1 cut(s)	271
Eam1104I	CTCTTC	3 cut(s)	337, 439, 643
EarI	CTCTTC	3 cut(s)	337, 439, 643
Eco130I	CCWWGG	2 cut(s)	541, 642
Eco24I	GRGCYC	2 cut(s)	296, 638
Eco47I	GGWCC	2 cut(s)	141, 381
EcoO109I	RGGNCCY	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	630
EcoT14I	CCWWGG	2 cut(s)	541, 642
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	2 cut(s)	296, 638
ErhI	CCWWGG	2 cut(s)	541, 642
FaeI	CATG	3 cut(s)	158, 267, 468
FatI	CATG	3 cut(s)	154, 263, 464
Fnu4HI	GCNGC	5 cut(s)	555, 648, 651, 676, 681
FokI	GGATG	1 cut(s)	603
FriOI	GRGCYC	2 cut(s)	296, 638
Fsp4HI	GCNGC	5 cut(s)	555, 648, 651, 676, 681
FspI	TGCGCA	1 cut(s)	176
GlaI	GCGC	2 cut(s)	176, 679
GluI	GCNGC	5 cut(s)	555, 648, 651, 676, 681
GsuI	CTGGAG	1 cut(s)	313
HaeIII	GGCC	2 cut(s)	539, 561
HapII	CCGG	1 cut(s)	334
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	2 cut(s)	177, 680
Hin1II	CATG	3 cut(s)	158, 267, 468
Hin6I	GCGC	2 cut(s)	175, 678
HinP1I	GCGC	2 cut(s)	175, 678
HinfI	GANTC	6 cut(s)	110, 416, 500, 506, 515, 521
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	1 cut(s)	605
Hpy188I	TCNGA	6 cut(s)	210, 505, 511, 520, 526, 567
Hpy188III	TCNNGA	2 cut(s)	144, 620
Hpy8I	GTNNAC	1 cut(s)	605
HpyAV	CCTTC	2 cut(s)	141, 283
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4V	TGCA	7 cut(s)	158, 194, 557, 590, 605, 653, 675
HpyF3I	CTNAG	2 cut(s)	283, 504
Hsp92II	CATG	3 cut(s)	158, 267, 468
HspAI	GCGC	2 cut(s)	175, 678
Kzo9I	GATC	4 cut(s)	82, 220, 461, 622
LguI	GCTCTTC	2 cut(s)	439, 643
LmnI	GCTCC	2 cut(s)	299, 323
Lsp1109I	GCAGC	5 cut(s)	541, 634, 637, 687, 692
LweI	GCATC	1 cut(s)	625
MaeIII	GTNAC	1 cut(s)	626
MalI	GATC	4 cut(s)	84, 222, 463, 624
MboI	GATC	4 cut(s)	82, 220, 461, 622
MboII	GAAGA	7 cut(s)	237, 354, 374, 422, 426, 587, 630
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	4 cut(s)	58, 296, 607, 638
MluCI	AATT	3 cut(s)	439, 704, 715
MlyI	GAGTC	2 cut(s)	515, 530
MmeI	TCCRAC	2 cut(s)	60, 452
MnlI	CCTC	8 cut(s)	42, 248, 337, 338, 481, 525, 573, 649
Mph1103I	ATGCAT	1 cut(s)	592
MroXI	GAANNNNTTC	1 cut(s)	433
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	2 cut(s)	483, 610
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	2 cut(s)	335, 632
MvaI	CCWGG	1 cut(s)	632
NciI	CCSGG	1 cut(s)	335
NdeII	GATC	4 cut(s)	82, 220, 461, 622
NlaIII	CATG	3 cut(s)	158, 267, 468
NlaIV	GGNNCC	3 cut(s)	222, 295, 325
NmuCI	GTSAC	1 cut(s)	626
NsbI	TGCGCA	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	592
NspI	RCATGY	1 cut(s)	158
PciSI	GCTCTTC	2 cut(s)	439, 643
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	4 cut(s)	110, 416, 500, 515
PkrI	GCNGC	5 cut(s)	556, 649, 652, 677, 682
PleI	GAGTC	2 cut(s)	514, 529
PpsI	GAGTC	2 cut(s)	514, 529
Psp6I	CCWGG	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	3 cut(s)	222, 295, 325
PspPI	GGNCC	4 cut(s)	141, 381, 538, 560
PstI	CTGCAG	2 cut(s)	559, 655
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	2 cut(s)	483, 610
SapI	GCTCTTC	2 cut(s)	439, 643
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	5 cut(s)	555, 648, 651, 676, 681
Sau3AI	GATC	4 cut(s)	82, 220, 461, 622
Sau96I	GGNCC	4 cut(s)	141, 381, 538, 560
SchI	GAGTC	2 cut(s)	515, 530
ScrFI	CCNGG	2 cut(s)	335, 632
SduI	GDGCHC	4 cut(s)	58, 296, 607, 638
SetI	ASST	6 cut(s)	143, 349, 434, 536, 602, 685
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	2 cut(s)	555, 651
SinI	GGWCC	2 cut(s)	141, 381
SmiMI	CAYNNNNRTG	2 cut(s)	483, 610
Sse9I	AATT	3 cut(s)	439, 704, 715
StyD4I	CCNGG	2 cut(s)	333, 630
StyI	CCWWGG	2 cut(s)	541, 642
TaaI	ACNGT	1 cut(s)	423
TaqI	TCGA	3 cut(s)	38, 351, 595
TasI	AATT	3 cut(s)	439, 704, 715
TfiI	GAWTC	4 cut(s)	110, 416, 500, 515
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	2 cut(s)	428, 612
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	5 cut(s)	554, 647, 650, 675, 680
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	5 cut(s)	53, 252, 375, 423, 513
TspGWI	ACGGA	2 cut(s)	213, 394
TspRI	CASTG	2 cut(s)	428, 612
VneI	GTGCAC	1 cut(s)	603
VpaK11BI	GGWCC	2 cut(s)	141, 381
XceI	RCATGY	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	433
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.