Rh3DG252800

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0009153
Physical Location & Seq
Reverse (-)
24872048 .. 24876666
4619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG252800.1

Sequence Viewer

Length: 732 bp
ATGAACAGCGCAATGAGAACGGCTCTCCTAAACTCAAAACTGAACTATACGATTTATGTGTGGAGTGCCCTGTTTCATTCAACCCCCGTGTTGGATCGTAAAAGACGCAACAACAACTGGGAATCATTTAGAAACCACAACTATTCAAAAAGGTCCAGAAGGATACATGCAAAACAAACATTATTGCGCAATGTCAATGATTATGCAGACTTCCTATTTCAGAAATGGCAGGATCCGTATGATTTGAACGAACCATCTTCAAATAGAGGCACTTCATGGTTTAAAAAGCAATACTCAGCGAAGGGCTCCAAAAAGAAATGGGGAAGCAATCAAGGAGCCTCCAGCCGGGGCAGAAGAGGTTTCGAGTTTTATGAAGAATATGTAGATGTACGGACCATTTTTTACTGGTCATTTGTCAATGAAGATGATTCACAGTGGAGAAGCTCTTCAAATTACTCTAATCACTCTGGGAGATCATGGAGTTGGAGACATCGTAATGAGGAACAATATGAATCTGAGTCTGACGATTCGGAGTCAGATGAGAGGTTGGCCCTTGGATTGAGTGCTGCAGGCCCTCTGAAACTTGAAGATGTCAAAAATGCATATCGAACCTGTGCACTGAAATGGCATCCAGATCGTCACCAGGGCTCTTCCAAGGCTGCTGCAGAGGAAAAGTTCAAGCATTGCAGCGCAGCTTATCAATCTTTATGTGATAAATTGGCTGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

243

Amino Acids

28.57

Weight (kDa)

9.44

Isoelectric Point (pI)

51.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 194 - 239 2.5e-11 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 188
AclWI GGATC 3 cut(s) 102, 227, 240
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 2 cut(s) 91, 345
AgsI TTSAA 7 cut(s) 81, 147, 247, 261, 450, 587, 679
AjnI CCWGG 1 cut(s) 642
AluBI AGCT 2 cut(s) 444, 695
AluI AGCT 2 cut(s) 444, 695
Alw21I GWGCWC 1 cut(s) 619
Alw26I GTCTC 1 cut(s) 481
Alw44I GTGCAC 1 cut(s) 615
AlwI GGATC 3 cut(s) 102, 227, 240
AoxI GGCC 2 cut(s) 549, 571
ApaLI GTGCAC 1 cut(s) 615
ApeKI GCWGC 5 cut(s) 566, 659, 662, 687, 692
Asp700I GAANNNNTTC 1 cut(s) 445
AspLEI GCGC 3 cut(s) 11, 189, 692
AspS9I GGNCC 4 cut(s) 153, 393, 550, 572
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 632
AvaII GGWCC 2 cut(s) 153, 393
BaeGI GKGCMC 2 cut(s) 70, 619
BamHI GGATCC 1 cut(s) 232
BanII GRGCYC 2 cut(s) 308, 650
Bbv12I GWGCWC 1 cut(s) 619
BbvI GCAGC 5 cut(s) 553, 646, 649, 699, 704
BccI CCATC 1 cut(s) 262
BceAI ACGGC 1 cut(s) 36
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BciT130I CCWGG 1 cut(s) 644
BciVI GTATCC 1 cut(s) 156
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 481
BfmI CTRYAG 2 cut(s) 567, 663
BfuI GTATCC 1 cut(s) 156
BisI GCNGC 5 cut(s) 567, 660, 663, 688, 693
BlsI GCNGC 5 cut(s) 568, 661, 664, 689, 694
Bme1390I CCNGG 2 cut(s) 347, 644
Bme18I GGWCC 2 cut(s) 153, 393
BmgT120I GGNCC 4 cut(s) 153, 393, 550, 572
BmiI GGNNCC 3 cut(s) 234, 307, 337
BmrFI CCNGG 2 cut(s) 347, 644
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 637
BmuI ACTGGG 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpmI CTGGAG 1 cut(s) 325
BpuMI CCSGG 1 cut(s) 347
BsaJI CCNNGG 4 cut(s) 346, 553, 643, 654
BsaXI ACNNNNNCTCC 2 cut(s) 478, 508
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 345
Bse1I ACTGG 2 cut(s) 122, 410
Bse3DI GCAATG 3 cut(s) 18, 196, 682
BseBI CCWGG 1 cut(s) 644
BseDI CCNNGG 4 cut(s) 346, 553, 643, 654
BseGI GGATG 1 cut(s) 628
BseLI CCNNNNNNNGG 2 cut(s) 91, 345
BseMI GCAATG 3 cut(s) 18, 196, 682
BseMII CTCAG 2 cut(s) 309, 507
BseNI ACTGG 2 cut(s) 122, 410
BseSI GKGCMC 2 cut(s) 70, 619
BseXI GCAGC 5 cut(s) 553, 646, 649, 699, 704
BshFI GGCC 2 cut(s) 551, 573
BsiHKAI GWGCWC 1 cut(s) 619
BsiSI CCGG 1 cut(s) 346
BslI CCNNNNNNNGG 2 cut(s) 91, 345
BsmAI GTCTC 1 cut(s) 481
BsnI GGCC 2 cut(s) 551, 573
Bsp1286I GDGCHC 4 cut(s) 70, 308, 619, 650
Bsp143I GATC 4 cut(s) 94, 232, 473, 634
BspANI GGCC 2 cut(s) 551, 573
BspCNI CTCAG 2 cut(s) 308, 508
BspLI GGNNCC 3 cut(s) 234, 307, 337
BspMAI CTGCAG 2 cut(s) 571, 667
BspPI GGATC 3 cut(s) 102, 227, 240
BspQI GCTCTTC 2 cut(s) 451, 655
BsrDI GCAATG 3 cut(s) 18, 196, 682
BsrI ACTGG 2 cut(s) 122, 410
BssECI CCNNGG 4 cut(s) 346, 553, 643, 654
BssMI GATC 4 cut(s) 94, 232, 473, 634
BssT1I CCWWGG 2 cut(s) 553, 654
Bst2UI CCWGG 1 cut(s) 644
Bst4CI ACNGT 1 cut(s) 435
Bst6I CTCTTC 3 cut(s) 349, 451, 655
BstC8I GCNNGC 1 cut(s) 571
BstDEI CTNAG 2 cut(s) 295, 516
BstF5I GGATG 1 cut(s) 628
BstHHI GCGC 3 cut(s) 11, 189, 692
BstKTI GATC 4 cut(s) 97, 235, 476, 637
BstMAI GTCTC 1 cut(s) 481
BstMBI GATC 4 cut(s) 94, 232, 473, 634
BstNI CCWGG 1 cut(s) 644
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 345, 642
BstSFI CTRYAG 2 cut(s) 567, 663
BstSLI GKGCMC 2 cut(s) 70, 619
BstV1I GCAGC 5 cut(s) 553, 646, 649, 699, 704
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuI GTATCC 1 cut(s) 156
BsuRI GGCC 2 cut(s) 551, 573
BtsCI GGATG 1 cut(s) 628
BtsIMutI CAGTG 2 cut(s) 440, 617
Cac8I GCNNGC 1 cut(s) 571
CfoI GCGC 3 cut(s) 11, 189, 692
Cfr13I GGNCC 4 cut(s) 153, 393, 550, 572
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 389
CviAII CATG 3 cut(s) 167, 276, 477
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 2 cut(s) 295, 516
DpnI GATC 4 cut(s) 96, 234, 475, 636
DpnII GATC 4 cut(s) 94, 232, 473, 634
DraI TTTAAA 1 cut(s) 283
Eam1104I CTCTTC 3 cut(s) 349, 451, 655
EarI CTCTTC 3 cut(s) 349, 451, 655
Eco130I CCWWGG 2 cut(s) 553, 654
Eco24I GRGCYC 2 cut(s) 308, 650
Eco47I GGWCC 2 cut(s) 153, 393
EcoO109I RGGNCCY 1 cut(s) 572
EcoRII CCWGG 1 cut(s) 642
EcoT14I CCWWGG 2 cut(s) 553, 654
EcoT22I ATGCAT 1 cut(s) 604
EcoT38I GRGCYC 2 cut(s) 308, 650
ErhI CCWWGG 2 cut(s) 553, 654
FaeI CATG 3 cut(s) 170, 279, 480
FatI CATG 3 cut(s) 166, 275, 476
Fnu4HI GCNGC 5 cut(s) 567, 660, 663, 688, 693
FokI GGATG 1 cut(s) 615
FriOI GRGCYC 2 cut(s) 308, 650
Fsp4HI GCNGC 5 cut(s) 567, 660, 663, 688, 693
FspI TGCGCA 1 cut(s) 188
GlaI GCGC 3 cut(s) 10, 188, 691
GluI GCNGC 5 cut(s) 567, 660, 663, 688, 693
GsuI CTGGAG 1 cut(s) 325
HaeIII GGCC 2 cut(s) 551, 573
HapII CCGG 1 cut(s) 346
HgaI GACGC 1 cut(s) 114
HhaI GCGC 3 cut(s) 11, 189, 692
Hin1II CATG 3 cut(s) 170, 279, 480
Hin6I GCGC 3 cut(s) 9, 187, 690
HinP1I GCGC 3 cut(s) 9, 187, 690
HinfI GANTC 6 cut(s) 122, 428, 512, 518, 527, 533
HpaII CCGG 1 cut(s) 346
HphI GGTGA 1 cut(s) 632
Hpy166II GTNNAC 1 cut(s) 617
Hpy188I TCNGA 6 cut(s) 222, 517, 523, 532, 538, 579
Hpy188III TCNNGA 2 cut(s) 156, 632
Hpy8I GTNNAC 1 cut(s) 617
HpyAV CCTTC 2 cut(s) 153, 295
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4V TGCA 7 cut(s) 170, 206, 569, 602, 617, 665, 687
HpyF3I CTNAG 2 cut(s) 295, 516
Hsp92II CATG 3 cut(s) 170, 279, 480
HspAI GCGC 3 cut(s) 9, 187, 690
Kzo9I GATC 4 cut(s) 94, 232, 473, 634
LguI GCTCTTC 2 cut(s) 451, 655
LmnI GCTCC 2 cut(s) 311, 335
Lsp1109I GCAGC 5 cut(s) 553, 646, 649, 699, 704
LweI GCATC 1 cut(s) 637
MaeIII GTNAC 1 cut(s) 638
MalI GATC 4 cut(s) 96, 234, 475, 636
MboI GATC 4 cut(s) 94, 232, 473, 634
MboII GAAGA 7 cut(s) 249, 366, 386, 434, 438, 599, 642
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 4 cut(s) 70, 308, 619, 650
MluCI AATT 3 cut(s) 451, 716, 727
MlyI GAGTC 2 cut(s) 527, 542
MmeI TCCRAC 2 cut(s) 72, 464
MnlI CCTC 7 cut(s) 260, 349, 350, 493, 537, 585, 661
Mph1103I ATGCAT 1 cut(s) 604
MroXI GAANNNNTTC 1 cut(s) 445
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 2 cut(s) 495, 622
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 2 cut(s) 347, 644
MvaI CCWGG 1 cut(s) 644
NciI CCSGG 1 cut(s) 347
NdeII GATC 4 cut(s) 94, 232, 473, 634
NlaIII CATG 3 cut(s) 170, 279, 480
NlaIV GGNNCC 3 cut(s) 234, 307, 337
NmuCI GTSAC 1 cut(s) 638
NsbI TGCGCA 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 604
NspI RCATGY 1 cut(s) 170
PciSI GCTCTTC 2 cut(s) 451, 655
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 4 cut(s) 122, 428, 512, 527
PkrI GCNGC 5 cut(s) 568, 661, 664, 689, 694
PleI GAGTC 2 cut(s) 526, 541
PpsI GAGTC 2 cut(s) 526, 541
Psp6I CCWGG 1 cut(s) 642
PspGI CCWGG 1 cut(s) 642
PspN4I GGNNCC 3 cut(s) 234, 307, 337
PspPI GGNCC 4 cut(s) 153, 393, 550, 572
PstI CTGCAG 2 cut(s) 571, 667
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
RseI CAYNNNNRTG 2 cut(s) 495, 622
SapI GCTCTTC 2 cut(s) 451, 655
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 5 cut(s) 567, 660, 663, 688, 693
Sau3AI GATC 4 cut(s) 94, 232, 473, 634
Sau96I GGNCC 4 cut(s) 153, 393, 550, 572
SchI GAGTC 2 cut(s) 527, 542
ScrFI CCNGG 2 cut(s) 347, 644
SduI GDGCHC 4 cut(s) 70, 308, 619, 650
SetI ASST 6 cut(s) 155, 361, 446, 548, 614, 697
SfaNI GCATC 1 cut(s) 637
SfcI CTRYAG 2 cut(s) 567, 663
SinI GGWCC 2 cut(s) 153, 393
SmiMI CAYNNNNRTG 2 cut(s) 495, 622
Sse9I AATT 3 cut(s) 451, 716, 727
StyD4I CCNGG 2 cut(s) 345, 642
StyI CCWWGG 2 cut(s) 553, 654
TaaI ACNGT 1 cut(s) 435
TaqI TCGA 2 cut(s) 363, 607
TasI AATT 3 cut(s) 451, 716, 727
TfiI GAWTC 4 cut(s) 122, 428, 512, 527
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 2 cut(s) 440, 624
TseFI GTSAC 1 cut(s) 638
TseI GCWGC 5 cut(s) 566, 659, 662, 687, 692
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 6 cut(s) 17, 65, 264, 387, 435, 525
TspGWI ACGGA 2 cut(s) 225, 406
TspRI CASTG 2 cut(s) 440, 624
VneI GTGCAC 1 cut(s) 615
VpaK11BI GGWCC 2 cut(s) 153, 393
XceI RCATGY 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 445
Zsp2I ATGCAT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.