Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009153

Physical Location & Seq

Genomic Coordinates Reverse (-)

6506778 .. 6517030

Gene Structure 10253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1056800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAACACCGCCATGAAAGCGGCTCTCACAAACTCCAGTCCCAACTACTGCATTTATGTGAGGGCCGCCCTCTTTCATTCCACCCCTGTCTTGGATCGTAAGCGACGATCCTACTCGGGACCTGTAAGATTTAACAACTATGGAAGAAGGTCCAGAAGGTTCTGTGGAAAGCAAACTTTAACGCGCAATGTCAATGCTTATGCAGATTTCTTATTTCAGAGTTGGCAGAATGAGTATGATGATGAGGAGCCATCTTCAGGTAGAGGCACCTCATGGTTTAAAAAGCAATACTCCGCCAAGGGGTCCAAAAAGAAGGCAGGCAATCAAGGAGCCTGGAAATACGGAAGAAGTAAGAAAGTAGTTATGCAGAAAAGGACATGTAGTAGATCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

132

Amino Acids

15.1

Weight (kDa)

10.38

Isoelectric Point (pI)

60.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42080 AT3G58020
fragaria_vesca	FvH4_6g22210 FvH4_6g22210 FvH4_6g22210
malus_domestica	MD12G1056800.v1.1 MD14G1056500.v1.1
prunus_persica	Prupe.7G077400_v2.0.a1
pyrus_communis	pycom12g05080 pycom14g04630
rosa_chinensis	RchiOBHm_Chr3g0479541
rosa_laevigata	RLG00000023560
rosa_multiflora	Rmu_sc0005275.1_g000002 Rmu_sc0021516.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402150
rosa_rugosa	Rorug03G0176400 Rorug03G0176500
rosa_samantha	Rh3AG227200 Rh3BG260400 Rh3CG257200 Rh3DG252800
rosa_wichuraiana	Rw3G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AccII	CGCG	1 cut(s)	184
AciI	CCGC	4 cut(s)	9, 20, 66, 294
AclWI	GGATC	2 cut(s)	102, 102
AcuI	CTGAAG	1 cut(s)	240
AfiI	CCNNNNNNNGG	3 cut(s)	91, 257, 300
AflIII	ACRYGT	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	332
AlwI	GGATC	2 cut(s)	102, 102
Ama87I	CYCGRG	1 cut(s)	115
AoxI	GGCC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	4 cut(s)	63, 119, 150, 303
AvaI	CYCGRG	1 cut(s)	115
AvaII	GGWCC	3 cut(s)	119, 150, 303
BanI	GGYRCC	1 cut(s)	266
BccI	CCATC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	334
BglII	AGATCT	1 cut(s)	386
BisI	GCNGC	2 cut(s)	21, 66
BlsI	GCNGC	2 cut(s)	22, 67
Bme1390I	CCNGG	1 cut(s)	334
Bme18I	GGWCC	3 cut(s)	119, 150, 303
BmeT110I	CYCGRG	1 cut(s)	115
BmgT120I	GGNCC	4 cut(s)	63, 119, 150, 303
BmiI	GGNNCC	5 cut(s)	120, 249, 268, 304, 331
BmrFI	CCNGG	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 257, 300
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	297
BseLI	CCNNNNNNNGG	3 cut(s)	91, 257, 300
BseMI	GCAATG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	115
BslFI	GGGAC	2 cut(s)	24, 132
BslI	CCNNNNNNNGG	3 cut(s)	91, 257, 300
BsmFI	GGGAC	2 cut(s)	24, 132
BsnI	GGCC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	115
Bsp143I	GATC	3 cut(s)	94, 107, 386
BspACI	CCGC	4 cut(s)	9, 20, 66, 294
BspANI	GGCC	1 cut(s)	65
BspFNI	CGCG	1 cut(s)	184
BspLI	GGNNCC	5 cut(s)	120, 249, 268, 304, 331
BspPI	GGATC	2 cut(s)	102, 102
BspT107I	GGYRCC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	3 cut(s)	94, 107, 386
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	319
BstFNI	CGCG	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	3 cut(s)	97, 110, 389
BstMBI	GATC	3 cut(s)	94, 107, 386
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	334
BstNSI	RCATGY	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	332
BstUI	CGCG	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	319
CfoI	GCGC	1 cut(s)	186
Cfr13I	GGNCC	4 cut(s)	63, 119, 150, 303
CviAII	CATG	3 cut(s)	13, 273, 378
CviJI	RGCY	4 cut(s)	23, 65, 250, 332
CviKI_1	RGCY	4 cut(s)	23, 65, 250, 332
DpnI	GATC	3 cut(s)	96, 109, 388
DpnII	GATC	3 cut(s)	94, 107, 386
DraI	TTTAAA	1 cut(s)	280
EciI	GGCGGA	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	297
Eco47I	GGWCC	3 cut(s)	119, 150, 303
Eco57I	CTGAAG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	3 cut(s)	16, 276, 381
FaiI	YATR	8 cut(s)	14, 57, 141, 201, 237, 274, 365, 379
FaqI	GGGAC	2 cut(s)	24, 132
FatI	CATG	3 cut(s)	12, 272, 377
Fnu4HI	GCNGC	2 cut(s)	21, 66
Fsp4HI	GCNGC	2 cut(s)	21, 66
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	2 cut(s)	21, 66
GsuI	CTGGAG	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	3 cut(s)	16, 276, 381
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	2 cut(s)	117, 153
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	3 cut(s)	141, 150, 307
HpyCH4V	TGCA	3 cut(s)	51, 203, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
Hsp92II	CATG	3 cut(s)	16, 276, 381
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	94, 107, 386
LmnI	GCTCC	2 cut(s)	247, 329
LpnPI	CCDG	8 cut(s)	49, 99, 135, 166, 243, 303, 319, 346
MalI	GATC	3 cut(s)	96, 109, 388
MboI	GATC	3 cut(s)	94, 107, 386
MboII	GAAGA	3 cut(s)	156, 246, 357
MflI	RGATCY	1 cut(s)	386
MnlI	CCTC	5 cut(s)	54, 80, 238, 257, 280
MseI	TTAA	3 cut(s)	132, 179, 279
MslI	CAYNNNNRTG	2 cut(s)	11, 56
MspR9I	CCNGG	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	334
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeII	GATC	3 cut(s)	94, 107, 386
NlaIII	CATG	3 cut(s)	16, 276, 381
NlaIV	GGNNCC	5 cut(s)	120, 249, 268, 304, 331
NspI	RCATGY	1 cut(s)	381
PciI	ACATGT	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	22, 67
PpuMI	RGGWCCY	1 cut(s)	119
PscI	ACATGT	1 cut(s)	377
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	332
PspN4I	GGNNCC	5 cut(s)	120, 249, 268, 304, 331
PspPI	GGNCC	4 cut(s)	63, 119, 150, 303
PspPPI	RGGWCCY	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	386
RseI	CAYNNNNRTG	2 cut(s)	11, 56
SaqAI	TTAA	3 cut(s)	132, 179, 279
SatI	GCNGC	2 cut(s)	21, 66
Sau3AI	GATC	3 cut(s)	94, 107, 386
Sau96I	GGNCC	4 cut(s)	63, 119, 150, 303
ScrFI	CCNGG	1 cut(s)	334
SetI	ASST	5 cut(s)	124, 152, 161, 262, 272
SinI	GGWCC	3 cut(s)	119, 150, 303
SmiMI	CAYNNNNRTG	2 cut(s)	11, 56
SsiI	CCGC	4 cut(s)	9, 20, 66, 294
StyD4I	CCNGG	1 cut(s)	332
StyI	CCWWGG	1 cut(s)	297
TauI	GCSGC	2 cut(s)	23, 68
Tru1I	TTAA	3 cut(s)	132, 179, 279
Tru9I	TTAA	3 cut(s)	132, 179, 279
TspDTI	ATGAA	3 cut(s)	17, 29, 65
TspGWI	ACGGA	1 cut(s)	357
VpaK11BI	GGWCC	3 cut(s)	119, 150, 303
XceI	RCATGY	1 cut(s)	381
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.