Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021516.1

Orthogroup ID

OG0009153

Physical Location & Seq

Genomic Coordinates Reverse (-)

147 .. 3985

Gene Structure 3839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021516.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgagaacggctctcctaaactcaaaactgaactactcgatttatgtgaggagtgccctgtttcattcaacccccgtgttggatcgtaaaagacgcaacaacaactgggaatcatttagaaaccacaactattcaaaaaggtccagaaggatacatgcaaaacaaacattattgcgcaatgtcaatgattatgcagacttcctatttcagaaatggcaggatccgtatgatttgaacgaaccatcttcaaatagaggcacttcatggtttaaaaagcaatactcagcaaagggctccaaaaagaaatggggaagcaatcaaggagcctccagccggggcagaagaggtttcgagttttatgaagaatatgtagatgtagagacccttttccagtccaggtttggtgggagcggattcttttactggtcatttgtcaatgaagatgattcacagcggagatgctcttcaaattactctaatcactctgggagatcatggagttggagacatcgtaatgaggaacaatacgaatctgagtctgacgattcggagtcagatgagagggtggcccttggattgagtgctgcaggccctctgaaacttgaagatgtcaaaaatgcatatcgaacctgtgcactgaaatggcatccagatcgtcaccagggctcttccaaggctgctgcagaggaaaagttcaagcattgcagcgcagcttatcaatctttatgtgataaattggctgtgaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

249

Amino Acids

29.14

Weight (kDa)

9.46

Isoelectric Point (pI)

55.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42080 AT3G58020
fragaria_vesca	FvH4_6g22210 FvH4_6g22210 FvH4_6g22210
malus_domestica	MD12G1056800.v1.1 MD14G1056500.v1.1
prunus_persica	Prupe.7G077400_v2.0.a1
pyrus_communis	pycom12g05080 pycom14g04630
rosa_chinensis	RchiOBHm_Chr3g0479541
rosa_laevigata	RLG00000023560
rosa_multiflora	Rmu_sc0005275.1_g000002 Rmu_sc0021516.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402150
rosa_rugosa	Rorug03G0176400 Rorug03G0176500
rosa_samantha	Rh3AG227200 Rh3BG260400 Rh3CG257200 Rh3DG252800
rosa_wichuraiana	Rw3G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	411
AciI	CCGC	2 cut(s)	411, 454
AclWI	GGATC	3 cut(s)	90, 215, 228
AfiI	CCNNNNNNNGG	2 cut(s)	79, 333
AgsI	TTSAA	7 cut(s)	69, 135, 235, 249, 468, 605, 697
AjnI	CCWGG	2 cut(s)	395, 660
AluBI	AGCT	1 cut(s)	713
AluI	AGCT	1 cut(s)	713
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	2 cut(s)	374, 499
Alw44I	GTGCAC	1 cut(s)	633
AlwI	GGATC	3 cut(s)	90, 215, 228
AoxI	GGCC	2 cut(s)	567, 589
ApaLI	GTGCAC	1 cut(s)	633
ApeKI	GCWGC	5 cut(s)	584, 677, 680, 705, 710
AspLEI	GCGC	2 cut(s)	177, 710
AspS9I	GGNCC	3 cut(s)	141, 568, 590
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	650
AvaII	GGWCC	1 cut(s)	141
BaeGI	GKGCMC	2 cut(s)	58, 637
BamHI	GGATCC	1 cut(s)	220
BanII	GRGCYC	2 cut(s)	296, 668
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	5 cut(s)	571, 664, 667, 717, 722
BccI	CCATC	1 cut(s)	250
BceAI	ACGGC	1 cut(s)	24
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BciT130I	CCWGG	2 cut(s)	397, 662
BciVI	GTATCC	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	2 cut(s)	374, 499
BfmI	CTRYAG	2 cut(s)	585, 681
BfuI	GTATCC	1 cut(s)	144
BisI	GCNGC	5 cut(s)	585, 678, 681, 706, 711
BlsI	GCNGC	5 cut(s)	586, 679, 682, 707, 712
Bme1390I	CCNGG	3 cut(s)	335, 397, 662
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	3 cut(s)	141, 568, 590
BmiI	GGNNCC	3 cut(s)	222, 295, 325
BmrFI	CCNGG	3 cut(s)	335, 397, 662
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	449, 655
BmuI	ACTGGG	1 cut(s)	115
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	313
BpuMI	CCSGG	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	4 cut(s)	334, 571, 661, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 333
Bse1I	ACTGG	3 cut(s)	110, 391, 428
Bse3DI	GCAATG	2 cut(s)	184, 700
BseBI	CCWGG	2 cut(s)	397, 662
BseDI	CCNNGG	4 cut(s)	334, 571, 661, 672
BseGI	GGATG	1 cut(s)	646
BseLI	CCNNNNNNNGG	2 cut(s)	79, 333
BseMI	GCAATG	2 cut(s)	184, 700
BseMII	CTCAG	2 cut(s)	297, 525
BseNI	ACTGG	3 cut(s)	110, 391, 428
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	2 cut(s)	58, 637
BseXI	GCAGC	5 cut(s)	571, 664, 667, 717, 722
BshFI	GGCC	2 cut(s)	569, 591
BsiHKAI	GWGCWC	1 cut(s)	637
BsiSI	CCGG	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	79, 333
BsmAI	GTCTC	2 cut(s)	374, 499
BsnI	GGCC	2 cut(s)	569, 591
Bso31I	GGTCTC	1 cut(s)	374
Bsp1286I	GDGCHC	4 cut(s)	58, 296, 637, 668
Bsp143I	GATC	4 cut(s)	82, 220, 491, 652
BspACI	CCGC	2 cut(s)	411, 454
BspANI	GGCC	2 cut(s)	569, 591
BspCNI	CTCAG	2 cut(s)	296, 526
BspLI	GGNNCC	3 cut(s)	222, 295, 325
BspMAI	CTGCAG	2 cut(s)	589, 685
BspPI	GGATC	3 cut(s)	90, 215, 228
BspQI	GCTCTTC	2 cut(s)	469, 673
BspTNI	GGTCTC	1 cut(s)	374
BsrBI	CCGCTC	1 cut(s)	411
BsrDI	GCAATG	2 cut(s)	184, 700
BsrI	ACTGG	3 cut(s)	110, 391, 428
BssECI	CCNNGG	4 cut(s)	334, 571, 661, 672
BssMI	GATC	4 cut(s)	82, 220, 491, 652
BssT1I	CCWWGG	2 cut(s)	571, 672
Bst2UI	CCWGG	2 cut(s)	397, 662
Bst6I	CTCTTC	3 cut(s)	337, 469, 673
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	2 cut(s)	283, 534
BstF5I	GGATG	1 cut(s)	646
BstHHI	GCGC	2 cut(s)	177, 710
BstKTI	GATC	4 cut(s)	85, 223, 494, 655
BstMAI	GTCTC	2 cut(s)	374, 499
BstMBI	GATC	4 cut(s)	82, 220, 491, 652
BstNI	CCWGG	2 cut(s)	397, 662
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	3 cut(s)	333, 395, 660
BstSFI	CTRYAG	2 cut(s)	585, 681
BstSLI	GKGCMC	2 cut(s)	58, 637
BstV1I	GCAGC	5 cut(s)	571, 664, 667, 717, 722
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuI	GTATCC	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	569, 591
BtsCI	GGATG	1 cut(s)	646
BtsIMutI	CAGTG	1 cut(s)	635
Cac8I	GCNNGC	1 cut(s)	589
CfoI	GCGC	2 cut(s)	177, 710
Cfr13I	GGNCC	3 cut(s)	141, 568, 590
CseI	GACGC	1 cut(s)	102
CviAII	CATG	3 cut(s)	155, 264, 495
DdeI	CTNAG	2 cut(s)	283, 534
DpnI	GATC	4 cut(s)	84, 222, 493, 654
DpnII	GATC	4 cut(s)	82, 220, 491, 652
DraI	TTTAAA	1 cut(s)	271
Eam1104I	CTCTTC	3 cut(s)	337, 469, 673
EarI	CTCTTC	3 cut(s)	337, 469, 673
Eco130I	CCWWGG	2 cut(s)	571, 672
Eco24I	GRGCYC	2 cut(s)	296, 668
Eco31I	GGTCTC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	590
EcoRII	CCWGG	2 cut(s)	395, 660
EcoT14I	CCWWGG	2 cut(s)	571, 672
EcoT22I	ATGCAT	1 cut(s)	622
EcoT38I	GRGCYC	2 cut(s)	296, 668
ErhI	CCWWGG	2 cut(s)	571, 672
FaeI	CATG	3 cut(s)	158, 267, 498
FatI	CATG	3 cut(s)	154, 263, 494
Fnu4HI	GCNGC	5 cut(s)	585, 678, 681, 706, 711
FokI	GGATG	1 cut(s)	633
FriOI	GRGCYC	2 cut(s)	296, 668
Fsp4HI	GCNGC	5 cut(s)	585, 678, 681, 706, 711
FspI	TGCGCA	1 cut(s)	176
GlaI	GCGC	2 cut(s)	176, 709
GluI	GCNGC	5 cut(s)	585, 678, 681, 706, 711
GsuI	CTGGAG	1 cut(s)	313
HaeIII	GGCC	2 cut(s)	569, 591
HapII	CCGG	1 cut(s)	334
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	2 cut(s)	177, 710
Hin1II	CATG	3 cut(s)	158, 267, 498
Hin6I	GCGC	2 cut(s)	175, 708
HinP1I	GCGC	2 cut(s)	175, 708
HinfI	GANTC	7 cut(s)	110, 414, 446, 530, 536, 545, 551
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	1 cut(s)	650
Hpy166II	GTNNAC	1 cut(s)	635
Hpy188I	TCNGA	6 cut(s)	210, 535, 541, 550, 556, 597
Hpy188III	TCNNGA	2 cut(s)	144, 650
Hpy8I	GTNNAC	1 cut(s)	635
HpyAV	CCTTC	1 cut(s)	141
HpyCH4V	TGCA	7 cut(s)	158, 194, 587, 620, 635, 683, 705
HpyF3I	CTNAG	2 cut(s)	283, 534
Hsp92II	CATG	3 cut(s)	158, 267, 498
HspAI	GCGC	2 cut(s)	175, 708
Kzo9I	GATC	4 cut(s)	82, 220, 491, 652
LguI	GCTCTTC	2 cut(s)	469, 673
LmnI	GCTCC	3 cut(s)	299, 323, 408
Lsp1109I	GCAGC	5 cut(s)	571, 664, 667, 717, 722
LweI	GCATC	2 cut(s)	449, 655
MaeIII	GTNAC	1 cut(s)	656
MalI	GATC	4 cut(s)	84, 222, 493, 654
MbiI	CCGCTC	1 cut(s)	411
MboI	GATC	4 cut(s)	82, 220, 491, 652
MboII	GAAGA	7 cut(s)	237, 354, 374, 452, 456, 617, 660
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	4 cut(s)	58, 296, 637, 668
MluCI	AATT	3 cut(s)	469, 734, 745
MlyI	GAGTC	2 cut(s)	545, 560
MmeI	TCCRAC	2 cut(s)	60, 482
MnlI	CCTC	8 cut(s)	42, 248, 337, 338, 511, 555, 603, 679
Mph1103I	ATGCAT	1 cut(s)	622
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	2 cut(s)	513, 640
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	3 cut(s)	335, 397, 662
MvaI	CCWGG	2 cut(s)	397, 662
NciI	CCSGG	1 cut(s)	335
NdeII	GATC	4 cut(s)	82, 220, 491, 652
NlaIII	CATG	3 cut(s)	158, 267, 498
NlaIV	GGNNCC	3 cut(s)	222, 295, 325
NmuCI	GTSAC	1 cut(s)	656
NsbI	TGCGCA	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	622
NspI	RCATGY	1 cut(s)	158
PciSI	GCTCTTC	2 cut(s)	469, 673
PfeI	GAWTC	5 cut(s)	110, 414, 446, 530, 545
PkrI	GCNGC	5 cut(s)	586, 679, 682, 707, 712
PleI	GAGTC	2 cut(s)	544, 559
PpsI	GAGTC	2 cut(s)	544, 559
Psp6I	CCWGG	2 cut(s)	395, 660
PspGI	CCWGG	2 cut(s)	395, 660
PspN4I	GGNNCC	3 cut(s)	222, 295, 325
PspPI	GGNCC	3 cut(s)	141, 568, 590
PstI	CTGCAG	2 cut(s)	589, 685
PsuI	RGATCY	1 cut(s)	220
RseI	CAYNNNNRTG	2 cut(s)	513, 640
SapI	GCTCTTC	2 cut(s)	469, 673
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	5 cut(s)	585, 678, 681, 706, 711
Sau3AI	GATC	4 cut(s)	82, 220, 491, 652
Sau96I	GGNCC	3 cut(s)	141, 568, 590
SchI	GAGTC	2 cut(s)	545, 560
ScrFI	CCNGG	3 cut(s)	335, 397, 662
SduI	GDGCHC	4 cut(s)	58, 296, 637, 668
SetI	ASST	5 cut(s)	143, 349, 401, 632, 715
SfaNI	GCATC	2 cut(s)	449, 655
SfcI	CTRYAG	2 cut(s)	585, 681
SinI	GGWCC	1 cut(s)	141
SmiMI	CAYNNNNRTG	2 cut(s)	513, 640
Sse9I	AATT	3 cut(s)	469, 734, 745
SsiI	CCGC	2 cut(s)	411, 454
StyD4I	CCNGG	3 cut(s)	333, 395, 660
StyI	CCWWGG	2 cut(s)	571, 672
TaqI	TCGA	3 cut(s)	38, 351, 625
TasI	AATT	3 cut(s)	469, 734, 745
TfiI	GAWTC	5 cut(s)	110, 414, 446, 530, 545
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	642
TseFI	GTSAC	1 cut(s)	656
TseI	GCWGC	5 cut(s)	584, 677, 680, 705, 710
Tsp45I	GTSAC	1 cut(s)	656
TspDTI	ATGAA	4 cut(s)	53, 252, 375, 453
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	642
VneI	GTGCAC	1 cut(s)	633
VpaK11BI	GGWCC	1 cut(s)	141
XceI	RCATGY	1 cut(s)	158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.