Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009153

Physical Location & Seq

Genomic Coordinates Reverse (-)

4951588 .. 4955722

Gene Structure 4135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g05080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAACACCGCCATGAAAGCGGCTCTCACAATCTCCAATCCCAACTGCTGCATTTATGTGAGGGCCGCCCTCTTTCATTCCACCCCTGTCTTGGATCGTAAGCGACGATCCTACTCAGAACCTAGATTTAACAACTATGGAAGAAGGTCCAGAAGGTTCCATGGAAAGCAAACTTTAACGCGCAATGTCAATGCTTATGCAGACTTCTTATTTCAGAGTTGGCAGAATGAGTATGATGATGAGGAGCCATCTTCAAGCAGAGGCACCTCATGGTTTAAAAAGCAATATTCCGCCAAGGGGTCCAAAATGAAGGCAGGCAATCAAGGAGCCTGGAAATACGGAAGAAGTGATTTCCGGTTTTGTGAAGAAGATGAAGACGTGGAGACCATTTTCCGATCCATGTTTGGTGGAAACAAATTTTATTATTGGTCATTCATTAATGAAGAGAATTCACAGTGGAGGAGCTCTAGTAATTACTCTAACTATGGGAGGTCTTGGAATTGGAGACATAACAATAAGGAAGAGTATCAATATGAATCTGAGCCTGAGAATATGGAGTCAGATGAAAGGTTGGCCCTCGGGTTGCATGCTTCGGGTCCTCTAACACTTGATGATGTCAAGAATGCGTATCGAATCTGTGCGCTGAAATGGCATCCAGATCGTCACCAGGGTTCTTCCAAGGCAGCTGCAGAGGAAAAGTTCAAGCTTTGCAGTGCAGCATATCAATCATTATACTGTAAACTGGCTGCGGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

253

Amino Acids

29.47

Weight (kDa)

8.89

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42080 AT3G58020
fragaria_vesca	FvH4_6g22210 FvH4_6g22210 FvH4_6g22210
malus_domestica	MD12G1056800.v1.1 MD14G1056500.v1.1
prunus_persica	Prupe.7G077400_v2.0.a1
pyrus_communis	pycom12g05080 pycom14g04630
rosa_chinensis	RchiOBHm_Chr3g0479541
rosa_laevigata	RLG00000023560
rosa_multiflora	Rmu_sc0005275.1_g000002 Rmu_sc0021516.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402150
rosa_rugosa	Rorug03G0176400 Rorug03G0176500
rosa_samantha	Rh3AG227200 Rh3BG260400 Rh3CG257200 Rh3DG252800
rosa_wichuraiana	Rw3G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	263
AccII	CGCG	1 cut(s)	181
AciI	CCGC	5 cut(s)	9, 20, 66, 291, 749
AclWI	GGATC	3 cut(s)	102, 102, 390
AcsI	RAATTY	2 cut(s)	416, 448
AfiI	CCNNNNNNNGG	2 cut(s)	91, 297
AgsI	TTSAA	2 cut(s)	255, 703
AjiI	CACGTC	1 cut(s)	379
AjnI	CCWGG	2 cut(s)	329, 666
AluBI	AGCT	3 cut(s)	465, 686, 706
AluI	AGCT	3 cut(s)	465, 686, 706
Alw21I	GWGCWC	1 cut(s)	467
Alw26I	GTCTC	2 cut(s)	377, 499
AlwI	GGATC	3 cut(s)	102, 102, 390
Ama87I	CYCGRG	1 cut(s)	578
AoxI	GGCC	2 cut(s)	63, 573
ApeKI	GCWGC	5 cut(s)	48, 683, 686, 716, 746
ApoI	RAATTY	2 cut(s)	416, 448
AseI	ATTAAT	1 cut(s)	438
AspLEI	GCGC	2 cut(s)	183, 643
AspS9I	GGNCC	5 cut(s)	63, 147, 300, 574, 596
AsuHPI	GGTGA	1 cut(s)	656
AvaI	CYCGRG	1 cut(s)	578
AvaII	GGWCC	3 cut(s)	147, 300, 596
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	467
BbvI	GCAGC	5 cut(s)	35, 673, 695, 728, 733
BccI	CCATC	1 cut(s)	256
BcgI	CGANNNNNNTGC	2 cut(s)	641, 675
BciT130I	CCWGG	2 cut(s)	331, 668
BcoDI	GTCTC	2 cut(s)	377, 499
BfaI	CTAG	2 cut(s)	123, 468
BfmI	CTRYAG	1 cut(s)	687
BisI	GCNGC	7 cut(s)	21, 49, 66, 684, 687, 717, 747
BlsI	GCNGC	7 cut(s)	22, 50, 67, 685, 688, 718, 748
Bme1390I	CCNGG	2 cut(s)	331, 668
Bme18I	GGWCC	3 cut(s)	147, 300, 596
BmeT110I	CYCGRG	1 cut(s)	578
BmgBI	CACGTC	1 cut(s)	379
BmgT120I	GGNCC	5 cut(s)	63, 147, 300, 574, 596
BmiI	GGNNCC	6 cut(s)	158, 246, 265, 301, 328, 597
BmrFI	CCNGG	2 cut(s)	331, 668
BmsI	GCATC	1 cut(s)	661
BpiI	GAAGAC	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	5 cut(s)	160, 294, 577, 667, 678
BsaWI	WCCGGW	1 cut(s)	354
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 297
Bse1I	ACTGG	1 cut(s)	747
Bse3DI	GCAATG	1 cut(s)	190
BseBI	CCWGG	2 cut(s)	331, 668
BseDI	CCNNGG	5 cut(s)	160, 294, 577, 667, 678
BseGI	GGATG	1 cut(s)	652
BseLI	CCNNNNNNNGG	2 cut(s)	91, 297
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	3 cut(s)	129, 531, 537
BseNI	ACTGG	1 cut(s)	747
BseRI	GAGGAG	2 cut(s)	257, 475
BseXI	GCAGC	5 cut(s)	35, 673, 695, 728, 733
BsgI	GTGCAG	1 cut(s)	735
Bsh1236I	CGCG	1 cut(s)	181
BshFI	GGCC	2 cut(s)	65, 575
BshNI	GGYRCC	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	467
BsiHKCI	CYCGRG	1 cut(s)	578
BsiSI	CCGG	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	91, 297
BsmAI	GTCTC	2 cut(s)	377, 499
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	2 cut(s)	65, 575
Bso31I	GGTCTC	1 cut(s)	377
BsoBI	CYCGRG	1 cut(s)	578
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	4 cut(s)	94, 107, 395, 658
Bsp19I	CCATGG	1 cut(s)	160
BspACI	CCGC	5 cut(s)	9, 20, 66, 291, 749
BspANI	GGCC	2 cut(s)	65, 575
BspCNI	CTCAG	3 cut(s)	128, 532, 538
BspFNI	CGCG	1 cut(s)	181
BspLI	GGNNCC	6 cut(s)	158, 246, 265, 301, 328, 597
BspMAI	CTGCAG	1 cut(s)	691
BspPI	GGATC	3 cut(s)	102, 102, 390
BspT107I	GGYRCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	747
BssECI	CCNNGG	5 cut(s)	160, 294, 577, 667, 678
BssMI	GATC	4 cut(s)	94, 107, 395, 658
BssT1I	CCWWGG	3 cut(s)	160, 294, 678
Bst2UI	CCWGG	2 cut(s)	331, 668
Bst4CI	ACNGT	2 cut(s)	456, 737
Bst6I	CTCTTC	2 cut(s)	438, 516
BstC8I	GCNNGC	2 cut(s)	316, 588
BstDEI	CTNAG	3 cut(s)	115, 540, 546
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	652
BstFNI	CGCG	1 cut(s)	181
BstHHI	GCGC	2 cut(s)	183, 643
BstKTI	GATC	4 cut(s)	97, 110, 398, 661
BstMAI	GTCTC	2 cut(s)	377, 499
BstMBI	GATC	4 cut(s)	94, 107, 395, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 649
BstNI	CCWGG	2 cut(s)	331, 668
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	2 cut(s)	329, 666
BstSFI	CTRYAG	1 cut(s)	687
BstUI	CGCG	1 cut(s)	181
BstV1I	GCAGC	5 cut(s)	35, 673, 695, 728, 733
BstV2I	GAAGAC	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	65, 575
BtgI	CCRYGG	1 cut(s)	160
BtrI	CACGTC	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	652
BtsI	GCAGTG	1 cut(s)	718
BtsIMutI	CAGTG	2 cut(s)	461, 718
Cac8I	GCNNGC	2 cut(s)	316, 588
CfoI	GCGC	2 cut(s)	183, 643
Cfr13I	GGNCC	5 cut(s)	63, 147, 300, 574, 596
CviAII	CATG	5 cut(s)	13, 161, 270, 400, 587
DdeI	CTNAG	3 cut(s)	115, 540, 546
DpnI	GATC	4 cut(s)	96, 109, 397, 660
DpnII	GATC	4 cut(s)	94, 107, 395, 658
DraI	TTTAAA	1 cut(s)	277
Eam1104I	CTCTTC	2 cut(s)	438, 516
EarI	CTCTTC	2 cut(s)	438, 516
EciI	GGCGGA	1 cut(s)	280
Ecl136II	GAGCTC	1 cut(s)	465
Eco130I	CCWWGG	3 cut(s)	160, 294, 678
Eco24I	GRGCYC	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	3 cut(s)	147, 300, 596
Eco53kI	GAGCTC	1 cut(s)	465
Eco88I	CYCGRG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	448
EcoRII	CCWGG	2 cut(s)	329, 666
EcoT14I	CCWWGG	3 cut(s)	160, 294, 678
EcoT38I	GRGCYC	1 cut(s)	467
ErhI	CCWWGG	3 cut(s)	160, 294, 678
FaeI	CATG	5 cut(s)	16, 164, 273, 403, 590
FatI	CATG	5 cut(s)	12, 160, 269, 399, 586
Fnu4HI	GCNGC	7 cut(s)	21, 49, 66, 684, 687, 717, 747
FokI	GGATG	1 cut(s)	639
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	7 cut(s)	21, 49, 66, 684, 687, 717, 747
FspBI	CTAG	2 cut(s)	123, 468
GlaI	GCGC	2 cut(s)	182, 642
GluI	GCNGC	7 cut(s)	21, 49, 66, 684, 687, 717, 747
HaeIII	GGCC	2 cut(s)	65, 575
HapII	CCGG	1 cut(s)	355
HhaI	GCGC	2 cut(s)	183, 643
Hin1II	CATG	5 cut(s)	16, 164, 273, 403, 590
Hin6I	GCGC	2 cut(s)	181, 641
HinP1I	GCGC	2 cut(s)	181, 641
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	3 cut(s)	536, 557, 633
HpaII	CCGG	1 cut(s)	355
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	1 cut(s)	740
Hpy188I	TCNGA	5 cut(s)	118, 216, 395, 541, 562
Hpy188III	TCNNGA	3 cut(s)	150, 619, 656
Hpy8I	GTNNAC	1 cut(s)	740
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	3 cut(s)	138, 147, 304
HpyCH4III	ACNGT	2 cut(s)	456, 737
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	6 cut(s)	51, 200, 586, 689, 711, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 649
HpyF3I	CTNAG	3 cut(s)	115, 540, 546
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	5 cut(s)	16, 164, 273, 403, 590
HspAI	GCGC	2 cut(s)	181, 641
Kzo9I	GATC	4 cut(s)	94, 107, 395, 658
LmnI	GCTCC	3 cut(s)	244, 326, 462
Lsp1109I	GCAGC	5 cut(s)	35, 673, 695, 728, 733
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	2 cut(s)	123, 468
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	662
MalI	GATC	4 cut(s)	96, 109, 397, 660
MboI	GATC	4 cut(s)	94, 107, 395, 658
MboII	GAAGA	9 cut(s)	153, 243, 354, 377, 380, 386, 455, 533, 666
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	4 cut(s)	416, 448, 472, 499
MlyI	GAGTC	1 cut(s)	566
MseI	TTAA	4 cut(s)	129, 176, 276, 438
MslI	CAYNNNNRTG	2 cut(s)	11, 56
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	1 cut(s)	355
MspR9I	CCNGG	2 cut(s)	331, 668
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	2 cut(s)	331, 668
MvnI	CGCG	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	17, 649
NcoI	CCATGG	1 cut(s)	160
NdeII	GATC	4 cut(s)	94, 107, 395, 658
NlaIII	CATG	5 cut(s)	16, 164, 273, 403, 590
NlaIV	GGNNCC	6 cut(s)	158, 246, 265, 301, 328, 597
NmuCI	GTSAC	1 cut(s)	662
NspI	RCATGY	1 cut(s)	590
PaeI	GCATGC	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	2 cut(s)	536, 633
PkrI	GCNGC	7 cut(s)	22, 50, 67, 685, 688, 718, 748
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PpuMI	RGGWCCY	1 cut(s)	596
PshBI	ATTAAT	1 cut(s)	438
Psp124BI	GAGCTC	1 cut(s)	467
Psp5II	RGGWCCY	1 cut(s)	596
Psp6I	CCWGG	2 cut(s)	329, 666
PspGI	CCWGG	2 cut(s)	329, 666
PspN4I	GGNNCC	6 cut(s)	158, 246, 265, 301, 328, 597
PspPI	GGNCC	5 cut(s)	63, 147, 300, 574, 596
PspPPI	RGGWCCY	1 cut(s)	596
PstI	CTGCAG	1 cut(s)	691
PvuII	CAGCTG	1 cut(s)	686
RseI	CAYNNNNRTG	2 cut(s)	11, 56
SacI	GAGCTC	1 cut(s)	467
SaqAI	TTAA	4 cut(s)	129, 176, 276, 438
SatI	GCNGC	7 cut(s)	21, 49, 66, 684, 687, 717, 747
Sau3AI	GATC	4 cut(s)	94, 107, 395, 658
Sau96I	GGNCC	5 cut(s)	63, 147, 300, 574, 596
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	2 cut(s)	331, 668
SduI	GDGCHC	1 cut(s)	467
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	1 cut(s)	687
SinI	GGWCC	3 cut(s)	147, 300, 596
SmiMI	CAYNNNNRTG	2 cut(s)	11, 56
SphI	GCATGC	1 cut(s)	590
Sse9I	AATT	4 cut(s)	416, 448, 472, 499
SsiI	CCGC	5 cut(s)	9, 20, 66, 291, 749
SspI	AATATT	1 cut(s)	287
SspMI	CTAG	2 cut(s)	123, 468
SstI	GAGCTC	1 cut(s)	467
StyD4I	CCNGG	2 cut(s)	329, 666
StyI	CCWWGG	3 cut(s)	160, 294, 678
TaaI	ACNGT	2 cut(s)	456, 737
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	631
TasI	AATT	4 cut(s)	416, 448, 472, 499
TauI	GCSGC	2 cut(s)	23, 68
TfiI	GAWTC	2 cut(s)	536, 633
Tru1I	TTAA	4 cut(s)	129, 176, 276, 438
Tru9I	TTAA	4 cut(s)	129, 176, 276, 438
TscAI	CASTG	2 cut(s)	461, 718
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	5 cut(s)	48, 683, 686, 716, 746
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	9 cut(s)	17, 29, 65, 323, 387, 424, 456, 549, 579
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	2 cut(s)	461, 718
VpaK11BI	GGWCC	3 cut(s)	147, 300, 596
VspI	ATTAAT	1 cut(s)	438
XapI	RAATTY	2 cut(s)	416, 448
XceI	RCATGY	1 cut(s)	590
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XspI	CTAG	2 cut(s)	123, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.