AT3G58020

Contains the following InterPro domains Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro IPR015609), Heat shock protein DnaJ, N-terminal (InterPro IPR001623)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009153
Physical Location & Seq
Forward (+)
21479380 .. 21481349
1970 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58020.1

Sequence Viewer

Length: 765 bp
ATGATGGCCGCCATAAGAGCAGCGATTCTGAAGCCGCAAGACTATTATTCTCACCTCAAAACAGCTCTTTTCCATTCGACTCCTATCTTACAACGCAAACATCAATCTAATTCAAAAGCTCGAAGCAAAAGGTTTGGAAGAAAGAAGGCAAAGCAAGATTTGCGTCGTAATGTGAATGCTTTTGCACAACACTTATTTGGGATATGGAGTGATGGGTTTGATTACTCTGGTAAGCACACCTCATGGTTTGAGAAACAGTACTCTAGGGTTTCCAAAAGGAATCGGAATGGTAAAACACACATCCCTCAACATTTGGATAAAAGATGTTTTGATTTTAGCGAAGTTGATGAGGGATACCAAATTGAGTACTTTTTAAAGACTGCGTTGGGTGGATCCCGAGGTTTCTCTTGGTCAAACACTCGTGAGGGGGGAACTCGCTCAGGGAGGTACTCTAACAACTTTAGAAAATCTTGGGGTTCAAGATATCGCTTAGATGAAGAAGAAGAAGAAGAAGAAGAAGAATACGAGTATTCTTCAACAGGAGTGAGCGACACAGAACCAAATCAGGAGTCTCATAGACAGACACTTGGTTTAAGTTCATCAGGTCCCTTAAACCTTGAAGATGTCAAAATTGCATACCGAGCTTGTGCATTAAAATGGCATCCAGATCGTCACCACACCTCTACCAAGAATGAAGCTGAGGAAAAATTCAAGCTCTGCACTGTGGCATATCAATCTTTATGCGAAAAGCTAGCCATGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

254

Amino Acids

29.57

Weight (kDa)

9.29

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 196 - 249 7.2e-10 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 9, 35
AclWI GGATC 2 cut(s) 387, 400
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 707
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 3 cut(s) 260, 368, 449
AgsI TTSAA 5 cut(s) 114, 480, 537, 620, 712
AluBI AGCT 6 cut(s) 65, 119, 644, 698, 715, 751
AluI AGCT 6 cut(s) 65, 119, 644, 698, 715, 751
Alw26I GTCTC 1 cut(s) 576
AlwI GGATC 2 cut(s) 387, 400
Ama87I CYCGRG 1 cut(s) 396
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 707
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
AspS9I GGNCC 1 cut(s) 605
AsuHPI GGTGA 2 cut(s) 44, 665
AsuNHI GCTAGC 1 cut(s) 751
AvaI CYCGRG 1 cut(s) 396
AvaII GGWCC 1 cut(s) 605
BamHI GGATCC 1 cut(s) 392
BauI CACGAG 1 cut(s) 420
BbvCI CCTCAGC 1 cut(s) 699
BbvI GCAGC 1 cut(s) 32
BccI CCATC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciVI GTATCC 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 576
BfaI CTAG 2 cut(s) 264, 752
BfuI GTATCC 1 cut(s) 347
BisI GCNGC 3 cut(s) 9, 21, 35
BlsI GCNGC 3 cut(s) 10, 22, 36
BmcAI AGTACT 2 cut(s) 260, 368
Bme18I GGWCC 1 cut(s) 605
BmeT110I CYCGRG 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 605
BmiI GGNNCC 2 cut(s) 394, 607
BmsI GCATC 1 cut(s) 670
BmtI GCTAGC 1 cut(s) 755
Bpu10I CCTNAGC 2 cut(s) 439, 699
BsaJI CCNNGG 1 cut(s) 397
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 2 cut(s) 300, 661
BseMII CTCAG 2 cut(s) 453, 690
BseXI GCAGC 1 cut(s) 32
BsgI GTGCAG 1 cut(s) 703
BshFI GGCC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 396
BslFI GGGAC 1 cut(s) 591
BsmAI GTCTC 1 cut(s) 576
BsmFI GGGAC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 1 cut(s) 8
BsoBI CYCGRG 1 cut(s) 396
Bsp143I GATC 2 cut(s) 392, 667
BspACI CCGC 2 cut(s) 9, 35
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 452, 691
BspLI GGNNCC 2 cut(s) 394, 607
BspOI GCTAGC 1 cut(s) 755
BspPI GGATC 2 cut(s) 387, 400
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 2 cut(s) 392, 667
BssSI CACGAG 1 cut(s) 420
Bst2BI CACGAG 1 cut(s) 420
Bst4CI ACNGT 2 cut(s) 258, 724
BstAPI GCANNNNNTGC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 753
BstDEI CTNAG 3 cut(s) 439, 490, 699
BstF5I GGATG 2 cut(s) 300, 661
BstKTI GATC 2 cut(s) 395, 670
BstMAI GTCTC 1 cut(s) 576
BstMBI GATC 2 cut(s) 392, 667
BstMWI GCNNNNNNNGC 3 cut(s) 17, 160, 641
BstV1I GCAGC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 392
BstYI RGATCY 1 cut(s) 392
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 2 cut(s) 300, 661
BtsIMutI CAGTG 1 cut(s) 720
Cac8I GCNNGC 1 cut(s) 753
Cfr13I GGNCC 1 cut(s) 605
CseI GACGC 1 cut(s) 152
Csp6I GTAC 3 cut(s) 259, 367, 448
CviAII CATG 2 cut(s) 243, 757
CviJI RGCY 9 cut(s) 8, 34, 65, 119, 644, 698, 715, 751, 755
CviKI_1 RGCY 9 cut(s) 8, 34, 65, 119, 644, 698, 715, 751, 755
CviQI GTAC 3 cut(s) 259, 367, 448
DdeI CTNAG 3 cut(s) 439, 490, 699
DpnI GATC 2 cut(s) 394, 669
DpnII GATC 2 cut(s) 392, 667
DraI TTTAAA 1 cut(s) 375
EaeI YGGCCR 1 cut(s) 6
Eco32I GATATC 1 cut(s) 485
Eco47I GGWCC 1 cut(s) 605
Eco57I CTGAAG 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 605
EcoRV GATATC 1 cut(s) 485
FaeI CATG 2 cut(s) 246, 760
FaiI YATR 8 cut(s) 14, 205, 244, 576, 637, 730, 742, 758
FaqI GGGAC 1 cut(s) 591
FatI CATG 2 cut(s) 242, 756
Fnu4HI GCNGC 3 cut(s) 9, 21, 35
FokI GGATG 2 cut(s) 287, 648
Fsp4HI GCNGC 3 cut(s) 9, 21, 35
FspBI CTAG 2 cut(s) 264, 752
GluI GCNGC 3 cut(s) 9, 21, 35
HaeIII GGCC 1 cut(s) 8
HgaI GACGC 1 cut(s) 152
Hin1II CATG 2 cut(s) 246, 760
HinfI GANTC 4 cut(s) 25, 79, 280, 569
HphI GGTGA 2 cut(s) 44, 665
Hpy188I TCNGA 2 cut(s) 30, 285
Hpy188III TCNNGA 5 cut(s) 396, 422, 480, 566, 665
Hpy99I CGWCG 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 2 cut(s) 258, 724
HpyCH4V TGCA 4 cut(s) 185, 635, 650, 720
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 160, 641
HpyF3I CTNAG 3 cut(s) 439, 490, 699
Hsp92II CATG 2 cut(s) 246, 760
Kzo9I GATC 2 cut(s) 392, 667
LpnPI CCDG 6 cut(s) 213, 426, 525, 551, 588, 678
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 1 cut(s) 670
MaeI CTAG 2 cut(s) 264, 752
MaeIII GTNAC 1 cut(s) 671
MalI GATC 2 cut(s) 394, 669
MboI GATC 2 cut(s) 392, 667
MflI RGATCY 1 cut(s) 392
MluCI AATT 4 cut(s) 109, 360, 630, 707
MlyI GAGTC 2 cut(s) 73, 578
MnlI CCTC 9 cut(s) 65, 250, 315, 343, 392, 418, 438, 691, 694
MseI TTAA 4 cut(s) 374, 593, 611, 653
MslI CAYNNNNRTG 1 cut(s) 655
Mva1269I GAATGC 1 cut(s) 181
MwoI GCNNNNNNNGC 3 cut(s) 17, 160, 641
NdeII GATC 2 cut(s) 392, 667
NheI GCTAGC 1 cut(s) 751
NlaIII CATG 2 cut(s) 246, 760
NlaIV GGNNCC 2 cut(s) 394, 607
NmuCI GTSAC 1 cut(s) 671
PctI GAATGC 1 cut(s) 181
PfeI GAWTC 2 cut(s) 25, 280
PkrI GCNGC 3 cut(s) 10, 22, 36
PleI GAGTC 2 cut(s) 73, 577
PpsI GAGTC 2 cut(s) 73, 577
PpuMI RGGWCCY 1 cut(s) 605
Psp5II RGGWCCY 1 cut(s) 605
PspN4I GGNNCC 2 cut(s) 394, 607
PspPI GGNCC 1 cut(s) 605
PspPPI RGGWCCY 1 cut(s) 605
PsuI RGATCY 1 cut(s) 392
RsaI GTAC 3 cut(s) 260, 368, 449
RsaNI GTAC 3 cut(s) 259, 367, 448
RseI CAYNNNNRTG 1 cut(s) 655
SaqAI TTAA 4 cut(s) 374, 593, 611, 653
SatI GCNGC 3 cut(s) 9, 21, 35
Sau3AI GATC 2 cut(s) 392, 667
Sau96I GGNCC 1 cut(s) 605
ScaI AGTACT 2 cut(s) 260, 368
SchI GAGTC 2 cut(s) 73, 578
SfaNI GCATC 1 cut(s) 670
SinI GGWCC 1 cut(s) 605
SmiMI CAYNNNNRTG 1 cut(s) 655
Sse9I AATT 4 cut(s) 109, 360, 630, 707
SsiI CCGC 2 cut(s) 9, 35
SspMI CTAG 2 cut(s) 264, 752
TaaI ACNGT 2 cut(s) 258, 724
TaqI TCGA 2 cut(s) 77, 121
TasI AATT 4 cut(s) 109, 360, 630, 707
TatI WGTACW 2 cut(s) 258, 366
TauI GCSGC 2 cut(s) 11, 37
TfiI GAWTC 2 cut(s) 25, 280
Tru1I TTAA 4 cut(s) 374, 593, 611, 653
Tru9I TTAA 4 cut(s) 374, 593, 611, 653
TscAI CASTG 1 cut(s) 727
TseFI GTSAC 1 cut(s) 671
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 671
TspDTI ATGAA 3 cut(s) 510, 588, 708
TspRI CASTG 1 cut(s) 727
VpaK11BI GGWCC 1 cut(s) 605
XapI RAATTY 1 cut(s) 707
XspI CTAG 2 cut(s) 264, 752
ZrmI AGTACT 2 cut(s) 260, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.