Rh3AG227200

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0009153
Physical Location & Seq
Reverse (-)
23426501 .. 23431737
5237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG227200.1

Sequence Viewer

Length: 765 bp
ATGTCTCAAATTTTAGCTTCATTCGTGTTCTTTTATTTCCTTTGGAATTACAATACATTATACTCTCTTTTCTTCTTTCTGATAGCAATTGAAAATTATGTCAATTACTTAGTTATGACTGTTTATTTCCAGAGAAGCCACAACTATTCAAAAAGGTCCAGAAGGATACATGCAAAACAAACATTATTGCGCAATGTCAATGATTATGCAGACTTCCTATTTCAGAAATGGCAGAATCCGTATGATTTGAACGAGCCATCTTCAAATAGAGGCACTTCATGGTTTAAAAAGCAATACTCAGCGAAGGGCTCCAAAAAGAAATGGGGAAGCAATCAAGGAGCCTCCAGCTGGGGCAGAAGAGGTTTCGAGTTTTGTGAAGATTATGTAGATGTAGAGACCATTTTCCAGTCCAGGTTTGGTGGGAGTGGATTCTTTTACTGGTCATTTGTCAATGAAGATGATTCACAGCGGAGAAGCTCTTCAAATTACTCTAATCACTCTGGGAGATCATGGAGTTGGAGACATCGTAATGAGGAACAATACGAATCTGAGTCTGACGATTCGGAGTCAGATGAGAGGTTGGCCCTTGGATTGAGTGCTGCAGGCCCTCTGAAACTTGAAGATGTCAAAAATGCATATCGAACCTGTGCACTGAAATGGCATCCAGATCGTCACCAGGGCTCTTCCAAGGCTGCTGCAGAGGAAAAGTTCAAGCATTGCAGCGCAGCTTATCAATCTTTATGTGATAAATTGGCTGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

254

Amino Acids

29.85

Weight (kDa)

8.88

Isoelectric Point (pI)

55.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 205 - 250 2.7e-11 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 191
AciI CCGC 1 cut(s) 469
AcsI RAATTY 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 348
AgsI TTSAA 7 cut(s) 92, 150, 250, 264, 483, 620, 712
AjnI CCWGG 2 cut(s) 410, 675
AluBI AGCT 4 cut(s) 17, 348, 477, 728
AluI AGCT 4 cut(s) 17, 348, 477, 728
Alw21I GWGCWC 1 cut(s) 652
Alw26I GTCTC 3 cut(s) 9, 389, 514
Alw44I GTGCAC 1 cut(s) 648
AoxI GGCC 2 cut(s) 582, 604
ApaLI GTGCAC 1 cut(s) 648
ApeKI GCWGC 5 cut(s) 599, 692, 695, 720, 725
ApoI RAATTY 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 478
AspLEI GCGC 2 cut(s) 192, 725
AspS9I GGNCC 3 cut(s) 156, 583, 605
AsuHPI GGTGA 1 cut(s) 665
AvaII GGWCC 1 cut(s) 156
BaeGI GKGCMC 1 cut(s) 652
BanII GRGCYC 2 cut(s) 311, 683
Bbv12I GWGCWC 1 cut(s) 652
BbvI GCAGC 5 cut(s) 586, 679, 682, 732, 737
BccI CCATC 1 cut(s) 265
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 2 cut(s) 412, 677
BciVI GTATCC 1 cut(s) 159
BcoDI GTCTC 3 cut(s) 9, 389, 514
BfmI CTRYAG 2 cut(s) 600, 696
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 5 cut(s) 600, 693, 696, 721, 726
BlsI GCNGC 5 cut(s) 601, 694, 697, 722, 727
Bme1390I CCNGG 2 cut(s) 412, 677
Bme18I GGWCC 1 cut(s) 156
BmgT120I GGNCC 3 cut(s) 156, 583, 605
BmiI GGNNCC 2 cut(s) 310, 340
BmrFI CCNGG 2 cut(s) 412, 677
BmsI GCATC 1 cut(s) 670
BpmI CTGGAG 1 cut(s) 328
BsaI GGTCTC 1 cut(s) 389
BsaJI CCNNGG 3 cut(s) 586, 676, 687
BsaXI ACNNNNNCTCC 2 cut(s) 511, 541
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 2 cut(s) 406, 443
Bse3DI GCAATG 2 cut(s) 199, 715
BseBI CCWGG 2 cut(s) 412, 677
BseDI CCNNGG 3 cut(s) 586, 676, 687
BseGI GGATG 1 cut(s) 661
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMI GCAATG 2 cut(s) 199, 715
BseMII CTCAG 2 cut(s) 312, 540
BseNI ACTGG 2 cut(s) 406, 443
BseSI GKGCMC 1 cut(s) 652
BseXI GCAGC 5 cut(s) 586, 679, 682, 732, 737
BseYI CCCAGC 1 cut(s) 348
BshFI GGCC 2 cut(s) 584, 606
BsiHKAI GWGCWC 1 cut(s) 652
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 3 cut(s) 9, 389, 514
BsnI GGCC 2 cut(s) 584, 606
Bso31I GGTCTC 1 cut(s) 389
Bsp1286I GDGCHC 3 cut(s) 311, 652, 683
Bsp143I GATC 2 cut(s) 506, 667
BspACI CCGC 1 cut(s) 469
BspANI GGCC 2 cut(s) 584, 606
BspCNI CTCAG 2 cut(s) 311, 541
BspLI GGNNCC 2 cut(s) 310, 340
BspMAI CTGCAG 2 cut(s) 604, 700
BspQI GCTCTTC 2 cut(s) 484, 688
BspTNI GGTCTC 1 cut(s) 389
BsrDI GCAATG 2 cut(s) 199, 715
BsrI ACTGG 2 cut(s) 406, 443
BssECI CCNNGG 3 cut(s) 586, 676, 687
BssMI GATC 2 cut(s) 506, 667
BssT1I CCWWGG 2 cut(s) 586, 687
Bst2UI CCWGG 2 cut(s) 412, 677
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 3 cut(s) 352, 484, 688
BstC8I GCNNGC 1 cut(s) 604
BstDEI CTNAG 3 cut(s) 109, 298, 549
BstF5I GGATG 1 cut(s) 661
BstHHI GCGC 2 cut(s) 192, 725
BstKTI GATC 2 cut(s) 509, 670
BstMAI GTCTC 3 cut(s) 9, 389, 514
BstMBI GATC 2 cut(s) 506, 667
BstNI CCWGG 2 cut(s) 412, 677
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 2 cut(s) 410, 675
BstSFI CTRYAG 2 cut(s) 600, 696
BstSLI GKGCMC 1 cut(s) 652
BstV1I GCAGC 5 cut(s) 586, 679, 682, 732, 737
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 2 cut(s) 584, 606
BtsCI GGATG 1 cut(s) 661
BtsIMutI CAGTG 1 cut(s) 650
Cac8I GCNNGC 1 cut(s) 604
CfoI GCGC 2 cut(s) 192, 725
Cfr13I GGNCC 3 cut(s) 156, 583, 605
CviAII CATG 3 cut(s) 170, 279, 510
DdeI CTNAG 3 cut(s) 109, 298, 549
DpnI GATC 2 cut(s) 508, 669
DpnII GATC 2 cut(s) 506, 667
DraI TTTAAA 1 cut(s) 286
Eam1104I CTCTTC 3 cut(s) 352, 484, 688
EarI CTCTTC 3 cut(s) 352, 484, 688
Eco130I CCWWGG 2 cut(s) 586, 687
Eco24I GRGCYC 2 cut(s) 311, 683
Eco31I GGTCTC 1 cut(s) 389
Eco47I GGWCC 1 cut(s) 156
EcoO109I RGGNCCY 1 cut(s) 605
EcoRII CCWGG 2 cut(s) 410, 675
EcoT14I CCWWGG 2 cut(s) 586, 687
EcoT22I ATGCAT 1 cut(s) 637
EcoT38I GRGCYC 2 cut(s) 311, 683
ErhI CCWWGG 2 cut(s) 586, 687
FaeI CATG 3 cut(s) 173, 282, 513
FatI CATG 3 cut(s) 169, 278, 509
Fnu4HI GCNGC 5 cut(s) 600, 693, 696, 721, 726
FokI GGATG 1 cut(s) 648
FriOI GRGCYC 2 cut(s) 311, 683
Fsp4HI GCNGC 5 cut(s) 600, 693, 696, 721, 726
FspI TGCGCA 1 cut(s) 191
GlaI GCGC 2 cut(s) 191, 724
GluI GCNGC 5 cut(s) 600, 693, 696, 721, 726
GsaI CCCAGC 1 cut(s) 352
GsuI CTGGAG 1 cut(s) 328
HaeIII GGCC 2 cut(s) 584, 606
HhaI GCGC 2 cut(s) 192, 725
Hin1II CATG 3 cut(s) 173, 282, 513
Hin6I GCGC 2 cut(s) 190, 723
HinP1I GCGC 2 cut(s) 190, 723
HinfI GANTC 7 cut(s) 235, 429, 461, 545, 551, 560, 566
HphI GGTGA 1 cut(s) 665
Hpy166II GTNNAC 1 cut(s) 650
Hpy188I TCNGA 7 cut(s) 81, 225, 550, 556, 565, 571, 612
Hpy188III TCNNGA 3 cut(s) 130, 159, 665
Hpy8I GTNNAC 1 cut(s) 650
HpyAV CCTTC 2 cut(s) 156, 298
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 7 cut(s) 173, 209, 602, 635, 650, 698, 720
HpyF3I CTNAG 3 cut(s) 109, 298, 549
Hsp92II CATG 3 cut(s) 173, 282, 513
HspAI GCGC 2 cut(s) 190, 723
Kzo9I GATC 2 cut(s) 506, 667
LguI GCTCTTC 2 cut(s) 484, 688
LmnI GCTCC 2 cut(s) 314, 338
Lsp1109I GCAGC 5 cut(s) 586, 679, 682, 732, 737
LweI GCATC 1 cut(s) 670
MaeIII GTNAC 1 cut(s) 671
MalI GATC 2 cut(s) 508, 669
MboI GATC 2 cut(s) 506, 667
MboII GAAGA 8 cut(s) 64, 252, 369, 389, 467, 471, 632, 675
MfeI CAATTG 1 cut(s) 87
MhlI GDGCHC 3 cut(s) 311, 652, 683
MluCI AATT 8 cut(s) 9, 46, 87, 94, 103, 484, 749, 760
MlyI GAGTC 2 cut(s) 560, 575
MmeI TCCRAC 1 cut(s) 497
MnlI CCTC 7 cut(s) 263, 352, 353, 526, 570, 618, 694
Mph1103I ATGCAT 1 cut(s) 637
MroXI GAANNNNTTC 1 cut(s) 478
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 2 cut(s) 528, 655
MspA1I CMGCKG 2 cut(s) 348, 469
MspR9I CCNGG 2 cut(s) 412, 677
MunI CAATTG 1 cut(s) 87
MvaI CCWGG 2 cut(s) 412, 677
NdeII GATC 2 cut(s) 506, 667
NlaIII CATG 3 cut(s) 173, 282, 513
NlaIV GGNNCC 2 cut(s) 310, 340
NmuCI GTSAC 1 cut(s) 671
NsbI TGCGCA 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 637
NspI RCATGY 1 cut(s) 173
PciSI GCTCTTC 2 cut(s) 484, 688
PdmI GAANNNNTTC 1 cut(s) 478
PfeI GAWTC 5 cut(s) 235, 429, 461, 545, 560
PkrI GCNGC 5 cut(s) 601, 694, 697, 722, 727
PleI GAGTC 2 cut(s) 559, 574
PpsI GAGTC 2 cut(s) 559, 574
Psp6I CCWGG 2 cut(s) 410, 675
PspFI CCCAGC 1 cut(s) 348
PspGI CCWGG 2 cut(s) 410, 675
PspN4I GGNNCC 2 cut(s) 310, 340
PspPI GGNCC 3 cut(s) 156, 583, 605
PstI CTGCAG 2 cut(s) 604, 700
PvuII CAGCTG 1 cut(s) 348
RseI CAYNNNNRTG 2 cut(s) 528, 655
SapI GCTCTTC 2 cut(s) 484, 688
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 5 cut(s) 600, 693, 696, 721, 726
Sau3AI GATC 2 cut(s) 506, 667
Sau96I GGNCC 3 cut(s) 156, 583, 605
SchI GAGTC 2 cut(s) 560, 575
ScrFI CCNGG 2 cut(s) 412, 677
SduI GDGCHC 3 cut(s) 311, 652, 683
SetI ASST 9 cut(s) 19, 158, 350, 364, 416, 479, 581, 647, 730
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 2 cut(s) 600, 696
SinI GGWCC 1 cut(s) 156
SmiMI CAYNNNNRTG 2 cut(s) 528, 655
Sse9I AATT 8 cut(s) 9, 46, 87, 94, 103, 484, 749, 760
SsiI CCGC 1 cut(s) 469
StyD4I CCNGG 2 cut(s) 410, 675
StyI CCWWGG 2 cut(s) 586, 687
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 2 cut(s) 366, 640
TasI AATT 8 cut(s) 9, 46, 87, 94, 103, 484, 749, 760
TfiI GAWTC 5 cut(s) 235, 429, 461, 545, 560
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 657
TseFI GTSAC 1 cut(s) 671
TseI GCWGC 5 cut(s) 599, 692, 695, 720, 725
Tsp45I GTSAC 1 cut(s) 671
TspDTI ATGAA 3 cut(s) 9, 267, 468
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 1 cut(s) 657
VneI GTGCAC 1 cut(s) 648
VpaK11BI GGWCC 1 cut(s) 156
XapI RAATTY 1 cut(s) 9
XceI RCATGY 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
XmnI GAANNNNTTC 1 cut(s) 478
Zsp2I ATGCAT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.