Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009153

Physical Location & Seq

Genomic Coordinates Reverse (-)

15872391 .. 15876638

Gene Structure 4248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22210.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAATAGCGCCATGAAAACGGCTCTCTTAAATTCAAAGCTGAACTACTCCGTTTATGTGAGGAGTGTCCTCTTTCACTCAACCACCGTTTTGGATCGTAAAAGACGCAACAACTACTGGGAATCACCCAGAAACGACAACTATTCAAAAAGGTCCAGAAGGATACATGGAAAGCAAACATTATTGCGCAATGTCAATGATTATGCAAACTTCCTATTTCAGAAATGGCAAAATCCCTATGATTTGAATGAGCCATCTTCTAGTAGAGGCACTTCATGGTTTAAAAAGCAATACTCAGCCAAGGGCCCCAAAAAGAAATGGGGAGGCAATCAAGGGGCCTCCAGCTGGGGCAGAAGAGGTTTCGACTTTTGTGAAGATTATGTAGATTTAGAGACCATTTTCCAGTCCAGGTTTGGTGGGAGTGGATTCGTTTACTGGTCATTCGTCAATGAAGACGATTCACAGCAGAGGAGCTCTTCATATTACTCTAATCACTCTGGAAAATCTTGGAGTTGGAGACATCGTAATGAAGAACGATATGAATCTGATTCTGACAATTCCGAGTCAGAGGAGAGGTTGGCCCTTGGATTGAGTGCTGCAGGCCCTCTGAAACTTGAAGATGTCAAAAATGCATATCGAACCTGTGCACTGAAATGGCATCCTGATCGTCACCAGGGCTCTTCCAAGGCTGCTGCAGAGGAAAAGTTCAAGCATTGCAGCACAGCTTATCAATCTTTATGTGATAAATTGGCTATGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

254

Amino Acids

29.44

Weight (kDa)

9.48

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42080 AT3G58020
fragaria_vesca	FvH4_6g22210 FvH4_6g22210 FvH4_6g22210
malus_domestica	MD12G1056800.v1.1 MD14G1056500.v1.1
prunus_persica	Prupe.7G077400_v2.0.a1
pyrus_communis	pycom12g05080 pycom14g04630
rosa_chinensis	RchiOBHm_Chr3g0479541
rosa_laevigata	RLG00000023560
rosa_multiflora	Rmu_sc0005275.1_g000002 Rmu_sc0021516.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402150
rosa_rugosa	Rorug03G0176400 Rorug03G0176500
rosa_samantha	Rh3AG227200 Rh3BG260400 Rh3CG257200 Rh3DG252800
rosa_wichuraiana	Rw3G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	188
AclWI	GGATC	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	5 cut(s)	36, 147, 247, 617, 709
AjnI	CCWGG	2 cut(s)	407, 672
AluBI	AGCT	4 cut(s)	40, 345, 474, 725
AluI	AGCT	4 cut(s)	40, 345, 474, 725
Alw21I	GWGCWC	2 cut(s)	476, 649
Alw26I	GTCTC	2 cut(s)	386, 511
Alw44I	GTGCAC	1 cut(s)	645
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	4 cut(s)	304, 336, 579, 601
ApaI	GGGCCC	1 cut(s)	308
ApaLI	GTGCAC	1 cut(s)	645
ApeKI	GCWGC	4 cut(s)	596, 689, 692, 717
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	2 cut(s)	11, 189
AspS9I	GGNCC	6 cut(s)	153, 304, 305, 336, 580, 602
AsuHPI	GGTGA	2 cut(s)	117, 662
AvaII	GGWCC	1 cut(s)	153
BaeGI	GKGCMC	2 cut(s)	308, 649
BanII	GRGCYC	3 cut(s)	308, 476, 680
BarI	GAAGNNNNNNTAC	2 cut(s)	256, 288
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	2 cut(s)	476, 649
BbvI	GCAGC	4 cut(s)	583, 676, 679, 729
BccI	CCATC	1 cut(s)	262
BceAI	ACGGC	1 cut(s)	36
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BciT130I	CCWGG	2 cut(s)	409, 674
BciVI	GTATCC	1 cut(s)	156
BcoDI	GTCTC	2 cut(s)	386, 511
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	2 cut(s)	597, 693
BfoI	RGCGCY	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	156
BisI	GCNGC	4 cut(s)	597, 690, 693, 718
BlsI	GCNGC	4 cut(s)	598, 691, 694, 719
Bme1390I	CCNGG	2 cut(s)	409, 674
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	6 cut(s)	153, 304, 305, 336, 580, 602
BmiI	GGNNCC	3 cut(s)	306, 307, 337
BmrFI	CCNGG	2 cut(s)	409, 674
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	667
BmuI	ACTGGG	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	325
BsaBI	GATNNNNATC	1 cut(s)	541
BsaI	GGTCTC	1 cut(s)	386
BsaJI	CCNNGG	4 cut(s)	300, 583, 673, 684
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	3 cut(s)	122, 403, 440
Bse3DI	GCAATG	2 cut(s)	196, 712
Bse8I	GATNNNNATC	1 cut(s)	541
BseBI	CCWGG	2 cut(s)	409, 674
BseDI	CCNNGG	4 cut(s)	300, 583, 673, 684
BseGI	GGATG	1 cut(s)	658
BseJI	GATNNNNATC	1 cut(s)	541
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMI	GCAATG	2 cut(s)	196, 712
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	3 cut(s)	122, 403, 440
BseRI	GAGGAG	3 cut(s)	76, 484, 584
BseSI	GKGCMC	2 cut(s)	308, 649
BseXI	GCAGC	4 cut(s)	583, 676, 679, 729
BseYI	CCCAGC	1 cut(s)	345
BshFI	GGCC	4 cut(s)	306, 338, 581, 603
BsiHKAI	GWGCWC	2 cut(s)	476, 649
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	2 cut(s)	386, 511
BsnI	GGCC	4 cut(s)	306, 338, 581, 603
Bso31I	GGTCTC	1 cut(s)	386
Bsp120I	GGGCCC	1 cut(s)	304
Bsp1286I	GDGCHC	4 cut(s)	308, 476, 649, 680
Bsp143I	GATC	2 cut(s)	94, 664
BspANI	GGCC	4 cut(s)	306, 338, 581, 603
BspCNI	CTCAG	1 cut(s)	308
BspLI	GGNNCC	3 cut(s)	306, 307, 337
BspMAI	CTGCAG	2 cut(s)	601, 697
BspPI	GGATC	1 cut(s)	102
BspQI	GCTCTTC	2 cut(s)	481, 685
BspTNI	GGTCTC	1 cut(s)	386
BsrDI	GCAATG	2 cut(s)	196, 712
BsrI	ACTGG	3 cut(s)	122, 403, 440
BssECI	CCNNGG	4 cut(s)	300, 583, 673, 684
BssMI	GATC	2 cut(s)	94, 664
BssT1I	CCWWGG	3 cut(s)	300, 583, 684
Bst2UI	CCWGG	2 cut(s)	409, 674
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	3 cut(s)	349, 481, 685
BstC8I	GCNNGC	1 cut(s)	601
BstDEI	CTNAG	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	658
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 189
BstKTI	GATC	2 cut(s)	97, 667
BstMAI	GTCTC	2 cut(s)	386, 511
BstMBI	GATC	2 cut(s)	94, 664
BstNI	CCWGG	2 cut(s)	409, 674
BstSCI	CCNGG	2 cut(s)	407, 672
BstSFI	CTRYAG	2 cut(s)	597, 693
BstSLI	GKGCMC	2 cut(s)	308, 649
BstV1I	GCAGC	4 cut(s)	583, 676, 679, 729
BstV2I	GAAGAC	1 cut(s)	459
BstXI	CCANNNNNNTGG	1 cut(s)	91
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	4 cut(s)	306, 338, 581, 603
BtsCI	GGATG	1 cut(s)	658
BtsIMutI	CAGTG	1 cut(s)	647
Cac8I	GCNNGC	1 cut(s)	601
CfoI	GCGC	2 cut(s)	11, 189
Cfr13I	GGNCC	6 cut(s)	153, 304, 305, 336, 580, 602
CseI	GACGC	1 cut(s)	114
CviAII	CATG	3 cut(s)	13, 167, 276
DdeI	CTNAG	1 cut(s)	295
DpnI	GATC	2 cut(s)	96, 666
DpnII	GATC	2 cut(s)	94, 664
DraI	TTTAAA	1 cut(s)	283
Eam1104I	CTCTTC	3 cut(s)	349, 481, 685
EarI	CTCTTC	3 cut(s)	349, 481, 685
Ecl136II	GAGCTC	1 cut(s)	474
Eco130I	CCWWGG	3 cut(s)	300, 583, 684
Eco24I	GRGCYC	3 cut(s)	308, 476, 680
Eco31I	GGTCTC	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	474
EcoICRI	GAGCTC	1 cut(s)	474
EcoO109I	RGGNCCY	4 cut(s)	304, 305, 336, 602
EcoRII	CCWGG	2 cut(s)	407, 672
EcoT14I	CCWWGG	3 cut(s)	300, 583, 684
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	3 cut(s)	308, 476, 680
ErhI	CCWWGG	3 cut(s)	300, 583, 684
FaeI	CATG	3 cut(s)	16, 170, 279
FatI	CATG	3 cut(s)	12, 166, 275
Fnu4HI	GCNGC	4 cut(s)	597, 690, 693, 718
FokI	GGATG	1 cut(s)	645
FriOI	GRGCYC	3 cut(s)	308, 476, 680
Fsp4HI	GCNGC	4 cut(s)	597, 690, 693, 718
FspBI	CTAG	1 cut(s)	261
FspI	TGCGCA	1 cut(s)	188
GlaI	GCGC	2 cut(s)	10, 188
GluI	GCNGC	4 cut(s)	597, 690, 693, 718
GsaI	CCCAGC	1 cut(s)	349
GsuI	CTGGAG	1 cut(s)	325
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	4 cut(s)	306, 338, 581, 603
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	2 cut(s)	11, 189
Hin1II	CATG	3 cut(s)	16, 170, 279
Hin6I	GCGC	2 cut(s)	9, 187
HinP1I	GCGC	2 cut(s)	9, 187
HinfI	GANTC	6 cut(s)	122, 426, 458, 542, 548, 563
HphI	GGTGA	2 cut(s)	117, 662
Hpy166II	GTNNAC	2 cut(s)	433, 647
Hpy188I	TCNGA	6 cut(s)	222, 547, 553, 562, 568, 609
Hpy188III	TCNNGA	3 cut(s)	156, 498, 662
Hpy8I	GTNNAC	2 cut(s)	433, 647
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	6 cut(s)	206, 599, 632, 647, 695, 717
HpyF3I	CTNAG	1 cut(s)	295
Hsp92II	CATG	3 cut(s)	16, 170, 279
HspAI	GCGC	2 cut(s)	9, 187
Kzo9I	GATC	2 cut(s)	94, 664
LguI	GCTCTTC	2 cut(s)	481, 685
LmnI	GCTCC	1 cut(s)	471
Lsp1109I	GCAGC	4 cut(s)	583, 676, 679, 729
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	668
MalI	GATC	2 cut(s)	96, 666
MboI	GATC	2 cut(s)	94, 664
MboII	GAAGA	8 cut(s)	249, 366, 386, 464, 468, 542, 629, 672
MhlI	GDGCHC	4 cut(s)	308, 476, 649, 680
MluCI	AATT	3 cut(s)	31, 556, 746
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	1 cut(s)	494
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	2 cut(s)	29, 282
MslI	CAYNNNNRTG	2 cut(s)	525, 652
MspA1I	CMGCKG	1 cut(s)	345
MspR9I	CCNGG	2 cut(s)	409, 674
MvaI	CCWGG	2 cut(s)	409, 674
NdeII	GATC	2 cut(s)	94, 664
NlaIII	CATG	3 cut(s)	16, 170, 279
NlaIV	GGNNCC	3 cut(s)	306, 307, 337
NmuCI	GTSAC	1 cut(s)	668
NsbI	TGCGCA	1 cut(s)	188
NsiI	ATGCAT	1 cut(s)	634
PciSI	GCTCTTC	2 cut(s)	481, 685
PfeI	GAWTC	5 cut(s)	122, 426, 458, 542, 548
PkrI	GCNGC	4 cut(s)	598, 691, 694, 719
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
Psp124BI	GAGCTC	1 cut(s)	476
Psp6I	CCWGG	2 cut(s)	407, 672
PspFI	CCCAGC	1 cut(s)	345
PspGI	CCWGG	2 cut(s)	407, 672
PspN4I	GGNNCC	3 cut(s)	306, 307, 337
PspOMI	GGGCCC	1 cut(s)	304
PspPI	GGNCC	6 cut(s)	153, 304, 305, 336, 580, 602
PstI	CTGCAG	2 cut(s)	601, 697
PvuII	CAGCTG	1 cut(s)	345
RseI	CAYNNNNRTG	2 cut(s)	525, 652
SacI	GAGCTC	1 cut(s)	476
SapI	GCTCTTC	2 cut(s)	481, 685
SaqAI	TTAA	2 cut(s)	29, 282
SatI	GCNGC	4 cut(s)	597, 690, 693, 718
Sau3AI	GATC	2 cut(s)	94, 664
Sau96I	GGNCC	6 cut(s)	153, 304, 305, 336, 580, 602
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	2 cut(s)	409, 674
SduI	GDGCHC	4 cut(s)	308, 476, 649, 680
SetI	ASST	9 cut(s)	42, 155, 347, 361, 413, 476, 578, 644, 727
SfaNI	GCATC	1 cut(s)	667
SfcI	CTRYAG	2 cut(s)	597, 693
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	2 cut(s)	525, 652
Sse9I	AATT	3 cut(s)	31, 556, 746
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	476
StyD4I	CCNGG	2 cut(s)	407, 672
StyI	CCWWGG	3 cut(s)	300, 583, 684
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	2 cut(s)	363, 637
TasI	AATT	3 cut(s)	31, 556, 746
TfiI	GAWTC	5 cut(s)	122, 426, 458, 542, 548
Tru1I	TTAA	2 cut(s)	29, 282
Tru9I	TTAA	2 cut(s)	29, 282
TscAI	CASTG	1 cut(s)	654
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	4 cut(s)	596, 689, 692, 717
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	7 cut(s)	17, 29, 264, 465, 468, 543, 555
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	654
VneI	GTGCAC	1 cut(s)	645
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	410
XspI	CTAG	1 cut(s)	261
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.