Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009153

Physical Location & Seq

Genomic Coordinates Reverse (-)

4311666 .. 4316429

Gene Structure 4764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g04630.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAACACAGCCATGAAAGCGGCTCTCACAAACTCCAAACTCAACTGCTGCATTTATGTGAGGGCCGCCCTCTTTCATTCCACCCCCGTCTTGGATCGTAAGCGACGCTCCTACTGGCAACCTAGATTCAACAACCATGGAAGAAGATCCAGAAGGCTCCATGGAAAGCAAGCGTTACTGAGGAATGTCAATGCTTATGCAGACTTCTTATTTCAGAGTTGGCAGAACGAATACGATGAGGAGGAGGAGCCATCATCAAGTAGAGGCACCTCATGGTTTAAAAAACAATACTCAGCCAAGGGGTCCAAAAAGAAGTCAGGCGATCAAGGAGCCTGGAATTACGGAAGAAATGATTTCTGGTTTGAAGAAGATGGAGATGTGGAGACGATTTTCCGATCCATGTTTGGTGGAAACAAATTTTATTATTGGTCATTCATTAATGAAGAGAATTCACAGCGGAGGAGCTCCAGTAATTACTCTAACTATGGAAGGTCTTGGAATTGGAGACATAACAATAAGGAAGAGTATCAATATGACTCTGAGCCTGAGAATTTGGAGTCAGATGAAAGGTTGGCCCTCGGGTTGCGTGCTTCGGGCCCTCTAACACTTGATGATGTCAAGAATGCATATCGAATCTGTGCGCTGAAATGGCATCCAGACCGTCACCAAGGTTCTTCCAAGGTGGCTGCAGAGGAAAAGTTCAAGCTTTGCAGCGCGGCATATCAATCATTATGCGGTAAATTGGCTGTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

252

Amino Acids

29.38

Weight (kDa)

9.25

Isoelectric Point (pI)

58.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42080 AT3G58020
fragaria_vesca	FvH4_6g22210 FvH4_6g22210 FvH4_6g22210
malus_domestica	MD12G1056800.v1.1 MD14G1056500.v1.1
prunus_persica	Prupe.7G077400_v2.0.a1
pyrus_communis	pycom12g05080 pycom14g04630
rosa_chinensis	RchiOBHm_Chr3g0479541
rosa_laevigata	RLG00000023560
rosa_multiflora	Rmu_sc0005275.1_g000002 Rmu_sc0021516.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402150
rosa_rugosa	Rorug03G0176400 Rorug03G0176500
rosa_samantha	Rh3AG227200 Rh3BG260400 Rh3CG257200 Rh3DG252800
rosa_wichuraiana	Rw3G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AccII	CGCG	1 cut(s)	716
AciI	CCGC	5 cut(s)	20, 66, 457, 716, 735
AclWI	GGATC	3 cut(s)	102, 141, 390
AcsI	RAATTY	3 cut(s)	416, 448, 550
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	3 cut(s)	130, 365, 703
AjnI	CCWGG	1 cut(s)	332
AluBI	AGCT	2 cut(s)	465, 706
AluI	AGCT	2 cut(s)	465, 706
Alw21I	GWGCWC	1 cut(s)	467
Alw26I	GTCTC	2 cut(s)	377, 499
AlwI	GGATC	3 cut(s)	102, 141, 390
Ama87I	CYCGRG	1 cut(s)	578
AoxI	GGCC	3 cut(s)	63, 573, 595
ApaI	GGGCCC	1 cut(s)	599
ApeKI	GCWGC	3 cut(s)	48, 686, 711
ApoI	RAATTY	3 cut(s)	416, 448, 550
AseI	ATTAAT	1 cut(s)	438
AspLEI	GCGC	2 cut(s)	643, 716
AspS9I	GGNCC	5 cut(s)	63, 303, 574, 595, 596
AsuHPI	GGTGA	1 cut(s)	656
AvaI	CYCGRG	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	599
BanI	GGYRCC	1 cut(s)	266
BanII	GRGCYC	2 cut(s)	467, 599
Bbv12I	GWGCWC	1 cut(s)	467
BbvI	GCAGC	3 cut(s)	35, 673, 723
BccI	CCATC	2 cut(s)	259, 365
BciT130I	CCWGG	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	377, 499
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	687
BisI	GCNGC	6 cut(s)	21, 49, 66, 687, 712, 717
BlsI	GCNGC	6 cut(s)	22, 50, 67, 688, 713, 718
Bme1390I	CCNGG	1 cut(s)	334
Bme18I	GGWCC	1 cut(s)	303
BmeT110I	CYCGRG	1 cut(s)	578
BmgT120I	GGNCC	5 cut(s)	63, 303, 574, 595, 596
BmiI	GGNNCC	6 cut(s)	158, 249, 268, 304, 331, 597
BmrFI	CCNGG	1 cut(s)	334
BmsI	GCATC	1 cut(s)	661
BpmI	CTGGAG	1 cut(s)	451
BsaJI	CCNNGG	6 cut(s)	136, 160, 297, 577, 667, 678
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	2 cut(s)	119, 468
BseBI	CCWGG	1 cut(s)	334
BseDI	CCNNGG	6 cut(s)	136, 160, 297, 577, 667, 678
BseGI	GGATG	1 cut(s)	652
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	4 cut(s)	170, 306, 531, 537
BseNI	ACTGG	2 cut(s)	119, 468
BseRI	GAGGAG	4 cut(s)	254, 257, 260, 475
BseSI	GKGCMC	1 cut(s)	599
BseXI	GCAGC	3 cut(s)	35, 673, 723
Bsh1236I	CGCG	1 cut(s)	716
BshFI	GGCC	3 cut(s)	65, 575, 597
BshNI	GGYRCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	467
BsiHKCI	CYCGRG	1 cut(s)	578
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	2 cut(s)	377, 499
BsmBI	CGTCTC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	3 cut(s)	65, 575, 597
BsoBI	CYCGRG	1 cut(s)	578
Bsp120I	GGGCCC	1 cut(s)	595
Bsp1286I	GDGCHC	2 cut(s)	467, 599
Bsp143I	GATC	4 cut(s)	94, 146, 322, 395
Bsp19I	CCATGG	2 cut(s)	136, 160
BspACI	CCGC	5 cut(s)	20, 66, 457, 716, 735
BspANI	GGCC	3 cut(s)	65, 575, 597
BspCNI	CTCAG	4 cut(s)	171, 305, 532, 538
BspFNI	CGCG	1 cut(s)	716
BspLI	GGNNCC	6 cut(s)	158, 249, 268, 304, 331, 597
BspMAI	CTGCAG	1 cut(s)	691
BspPI	GGATC	3 cut(s)	102, 141, 390
BspT107I	GGYRCC	1 cut(s)	266
BsrI	ACTGG	2 cut(s)	119, 468
BssECI	CCNNGG	6 cut(s)	136, 160, 297, 577, 667, 678
BssMI	GATC	4 cut(s)	94, 146, 322, 395
BssT1I	CCWWGG	5 cut(s)	136, 160, 297, 667, 678
Bst2UI	CCWGG	1 cut(s)	334
Bst4CI	ACNGT	1 cut(s)	662
Bst6I	CTCTTC	2 cut(s)	438, 516
BstC8I	GCNNGC	2 cut(s)	171, 588
BstDEI	CTNAG	4 cut(s)	179, 292, 540, 546
BstDSI	CCRYGG	2 cut(s)	136, 160
BstF5I	GGATG	1 cut(s)	652
BstFNI	CGCG	1 cut(s)	716
BstHHI	GCGC	2 cut(s)	643, 716
BstKTI	GATC	4 cut(s)	97, 149, 325, 398
BstMAI	GTCTC	2 cut(s)	377, 499
BstMBI	GATC	4 cut(s)	94, 146, 322, 395
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 649
BstNI	CCWGG	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	332
BstSFI	CTRYAG	1 cut(s)	687
BstSLI	GKGCMC	1 cut(s)	599
BstUI	CGCG	1 cut(s)	716
BstV1I	GCAGC	3 cut(s)	35, 673, 723
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	65, 575, 597
BtgI	CCRYGG	2 cut(s)	136, 160
BtsCI	GGATG	1 cut(s)	652
Cac8I	GCNNGC	2 cut(s)	171, 588
CfoI	GCGC	2 cut(s)	643, 716
Cfr13I	GGNCC	5 cut(s)	63, 303, 574, 595, 596
CseI	GACGC	1 cut(s)	114
CviAII	CATG	5 cut(s)	13, 137, 161, 273, 400
DdeI	CTNAG	4 cut(s)	179, 292, 540, 546
DpnI	GATC	4 cut(s)	96, 148, 324, 397
DpnII	GATC	4 cut(s)	94, 146, 322, 395
DraI	TTTAAA	1 cut(s)	280
Eam1104I	CTCTTC	2 cut(s)	438, 516
EarI	CTCTTC	2 cut(s)	438, 516
Ecl136II	GAGCTC	1 cut(s)	465
Eco130I	CCWWGG	5 cut(s)	136, 160, 297, 667, 678
Eco24I	GRGCYC	2 cut(s)	467, 599
Eco47I	GGWCC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	465
Eco88I	CYCGRG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	332
EcoT14I	CCWWGG	5 cut(s)	136, 160, 297, 667, 678
EcoT22I	ATGCAT	1 cut(s)	628
EcoT38I	GRGCYC	2 cut(s)	467, 599
ErhI	CCWWGG	5 cut(s)	136, 160, 297, 667, 678
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	5 cut(s)	16, 140, 164, 276, 403
FatI	CATG	5 cut(s)	12, 136, 160, 272, 399
Fnu4HI	GCNGC	6 cut(s)	21, 49, 66, 687, 712, 717
FokI	GGATG	1 cut(s)	639
FriOI	GRGCYC	2 cut(s)	467, 599
Fsp4HI	GCNGC	6 cut(s)	21, 49, 66, 687, 712, 717
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	2 cut(s)	642, 715
GluI	GCNGC	6 cut(s)	21, 49, 66, 687, 712, 717
GsuI	CTGGAG	1 cut(s)	451
HaeIII	GGCC	3 cut(s)	65, 575, 597
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	2 cut(s)	643, 716
Hin1II	CATG	5 cut(s)	16, 140, 164, 276, 403
Hin6I	GCGC	2 cut(s)	641, 714
HinP1I	GCGC	2 cut(s)	641, 714
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	4 cut(s)	126, 536, 557, 633
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	1 cut(s)	751
Hpy188I	TCNGA	4 cut(s)	216, 395, 541, 562
Hpy188III	TCNNGA	3 cut(s)	150, 619, 656
Hpy8I	GTNNAC	1 cut(s)	751
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	2 cut(s)	147, 483
HpyCH4III	ACNGT	1 cut(s)	662
HpyCH4V	TGCA	5 cut(s)	51, 200, 626, 689, 711
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 649
HpyF3I	CTNAG	4 cut(s)	179, 292, 540, 546
Hsp92II	CATG	5 cut(s)	16, 140, 164, 276, 403
HspAI	GCGC	2 cut(s)	641, 714
Kzo9I	GATC	4 cut(s)	94, 146, 322, 395
LmnI	GCTCC	6 cut(s)	113, 162, 247, 329, 462, 470
LpnPI	CCDG	9 cut(s)	100, 163, 303, 319, 343, 346, 481, 558, 669
Lsp1109I	GCAGC	3 cut(s)	35, 673, 723
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	174, 662
MalI	GATC	4 cut(s)	96, 148, 324, 397
MboI	GATC	4 cut(s)	94, 146, 322, 395
MboII	GAAGA	8 cut(s)	153, 156, 357, 377, 380, 455, 533, 666
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	2 cut(s)	467, 599
MluCI	AATT	7 cut(s)	337, 416, 448, 472, 499, 550, 740
MlyI	GAGTC	2 cut(s)	530, 566
Mph1103I	ATGCAT	1 cut(s)	628
MseI	TTAA	2 cut(s)	279, 438
MslI	CAYNNNNRTG	2 cut(s)	11, 56
MspA1I	CMGCKG	1 cut(s)	457
MspR9I	CCNGG	1 cut(s)	334
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	1 cut(s)	334
MvnI	CGCG	1 cut(s)	716
MwoI	GCNNNNNNNGC	2 cut(s)	17, 649
NcoI	CCATGG	2 cut(s)	136, 160
NdeII	GATC	4 cut(s)	94, 146, 322, 395
NlaIII	CATG	5 cut(s)	16, 140, 164, 276, 403
NlaIV	GGNNCC	6 cut(s)	158, 249, 268, 304, 331, 597
NmuCI	GTSAC	1 cut(s)	662
NsiI	ATGCAT	1 cut(s)	628
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	2 cut(s)	126, 633
PkrI	GCNGC	6 cut(s)	22, 50, 67, 688, 713, 718
PleI	GAGTC	2 cut(s)	530, 565
PpsI	GAGTC	2 cut(s)	530, 565
PshBI	ATTAAT	1 cut(s)	438
Psp124BI	GAGCTC	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	332
PspN4I	GGNNCC	6 cut(s)	158, 249, 268, 304, 331, 597
PspOMI	GGGCCC	1 cut(s)	595
PspPI	GGNCC	5 cut(s)	63, 303, 574, 595, 596
PstI	CTGCAG	1 cut(s)	691
PsuI	RGATCY	1 cut(s)	146
RseI	CAYNNNNRTG	2 cut(s)	11, 56
SacI	GAGCTC	1 cut(s)	467
SaqAI	TTAA	2 cut(s)	279, 438
SatI	GCNGC	6 cut(s)	21, 49, 66, 687, 712, 717
Sau3AI	GATC	4 cut(s)	94, 146, 322, 395
Sau96I	GGNCC	5 cut(s)	63, 303, 574, 595, 596
SchI	GAGTC	2 cut(s)	530, 566
ScrFI	CCNGG	1 cut(s)	334
SduI	GDGCHC	2 cut(s)	467, 599
SetI	ASST	8 cut(s)	124, 272, 467, 494, 572, 673, 684, 708
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	1 cut(s)	687
SinI	GGWCC	1 cut(s)	303
SmiMI	CAYNNNNRTG	2 cut(s)	11, 56
Sse9I	AATT	7 cut(s)	337, 416, 448, 472, 499, 550, 740
SsiI	CCGC	5 cut(s)	20, 66, 457, 716, 735
SspMI	CTAG	1 cut(s)	123
SstI	GAGCTC	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	332
StyI	CCWWGG	5 cut(s)	136, 160, 297, 667, 678
TaaI	ACNGT	1 cut(s)	662
TaqI	TCGA	1 cut(s)	631
TasI	AATT	7 cut(s)	337, 416, 448, 472, 499, 550, 740
TauI	GCSGC	3 cut(s)	23, 68, 719
TfiI	GAWTC	2 cut(s)	126, 633
Tru1I	TTAA	2 cut(s)	279, 438
Tru9I	TTAA	2 cut(s)	279, 438
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	3 cut(s)	48, 686, 711
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	6 cut(s)	17, 29, 65, 424, 456, 579
TspGWI	ACGGA	1 cut(s)	357
VpaK11BI	GGWCC	1 cut(s)	303
VspI	ATTAAT	1 cut(s)	438
XapI	RAATTY	3 cut(s)	416, 448, 550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XspI	CTAG	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.