Rh3BG260400

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0009153
Physical Location & Seq
Reverse (-)
25252749 .. 25256578
3830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG260400.1

Sequence Viewer

Length: 762 bp
ATGAACAGCGCGATGAAAACGGCTCTCCTAAACTCAAAACTGAACTACTCGATTTATGTGAGGAGTGCCCTGTTTCATTCAACCCCTGTGTTGGATCGTAAAAGACGCAACAACAACTGGGAATCATTTAGAAACCACAACTATTCAAAAAGGTCCAGAAGGATACATGCAAAACAAACATTATTGCGCAATGTCAATGATTATGCAGACTTCCTATTTCAGAAATGGCAGAATCCGTATGATTTGAATGAGCCATCTTCAAATAGAGGCACTTCATGGTTTAAAAAGCAATACTCAGCGAAAGGCTCCAAAAAGAAATGGGGAAGCAATCAAGGAGCCTCCAGCTGGGGCAGAAGAGGTTTCGAGTTTTGTGAAGATTATGTAGATGTAGAGACCATTTTCCAGTCCAGGTTTGGTGGGAGCGGATTCTTTTACTGGTCATTTGTTAATGAAGATGATTCACAGCGGAGAAGCTCTTCAAATTACTCTAATCACTCTGGGAGATCATGGAGTTGGAGACATCGTAATGAGGAACAATACGAATCTGAGTCTGACGATTCGGAGTCAGATGAGAGGTTAGCCCTTGGATTGAGTGCTGCAGGCCCTCTGAAACTGGAAGATGTCAAAAATGCATATCGAACCTGTGCACTGAAATGGCATCCAGATCGTCACCAGGGCTCTTCCAAGGCTGCTGCAGAGGAAAAGTTCAAGCATTGCAGCGCAGCTTATCAATCTTTATGTGATAAATTGGCTGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

253

Amino Acids

29.47

Weight (kDa)

9.46

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 204 - 249 2.7e-11 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 188
AccBSI CCGCTC 1 cut(s) 423
AccII CGCG 1 cut(s) 11
AciI CCGC 2 cut(s) 423, 466
AclWI GGATC 1 cut(s) 102
AfiI CCNNNNNNNGG 2 cut(s) 91, 345
AgsI TTSAA 6 cut(s) 81, 147, 247, 261, 480, 709
AjnI CCWGG 2 cut(s) 407, 672
AluBI AGCT 3 cut(s) 345, 474, 725
AluI AGCT 3 cut(s) 345, 474, 725
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 2 cut(s) 386, 511
Alw44I GTGCAC 1 cut(s) 645
AlwI GGATC 1 cut(s) 102
AoxI GGCC 1 cut(s) 601
ApaLI GTGCAC 1 cut(s) 645
ApeKI GCWGC 5 cut(s) 596, 689, 692, 717, 722
Asp700I GAANNNNTTC 1 cut(s) 475
AspLEI GCGC 3 cut(s) 11, 189, 722
AspS9I GGNCC 2 cut(s) 153, 602
AsuHPI GGTGA 1 cut(s) 662
AvaII GGWCC 1 cut(s) 153
BaeGI GKGCMC 2 cut(s) 70, 649
BanII GRGCYC 1 cut(s) 680
Bbv12I GWGCWC 1 cut(s) 649
BbvI GCAGC 5 cut(s) 583, 676, 679, 729, 734
BccI CCATC 1 cut(s) 262
BceAI ACGGC 1 cut(s) 36
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciT130I CCWGG 2 cut(s) 409, 674
BciVI GTATCC 1 cut(s) 156
BcoDI GTCTC 2 cut(s) 386, 511
BfmI CTRYAG 2 cut(s) 597, 693
BfuI GTATCC 1 cut(s) 156
BisI GCNGC 5 cut(s) 597, 690, 693, 718, 723
BlsI GCNGC 5 cut(s) 598, 691, 694, 719, 724
Bme1390I CCNGG 2 cut(s) 409, 674
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 153, 602
BmiI GGNNCC 2 cut(s) 307, 337
BmrFI CCNGG 2 cut(s) 409, 674
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 667
BmuI ACTGGG 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 325
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 3 cut(s) 583, 673, 684
BsaXI ACNNNNNCTCC 2 cut(s) 508, 538
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 345
Bse1I ACTGG 4 cut(s) 122, 403, 440, 618
Bse3DI GCAATG 2 cut(s) 196, 712
BseBI CCWGG 2 cut(s) 409, 674
BseDI CCNNGG 3 cut(s) 583, 673, 684
BseGI GGATG 1 cut(s) 658
BseLI CCNNNNNNNGG 2 cut(s) 91, 345
BseMI GCAATG 2 cut(s) 196, 712
BseMII CTCAG 2 cut(s) 309, 537
BseNI ACTGG 4 cut(s) 122, 403, 440, 618
BseRI GAGGAG 1 cut(s) 76
BseSI GKGCMC 2 cut(s) 70, 649
BseXI GCAGC 5 cut(s) 583, 676, 679, 729, 734
BseYI CCCAGC 1 cut(s) 345
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 649
BslI CCNNNNNNNGG 2 cut(s) 91, 345
BsmAI GTCTC 2 cut(s) 386, 511
BsnI GGCC 1 cut(s) 603
Bso31I GGTCTC 1 cut(s) 386
Bsp1286I GDGCHC 3 cut(s) 70, 649, 680
Bsp143I GATC 3 cut(s) 94, 503, 664
BspACI CCGC 2 cut(s) 423, 466
BspANI GGCC 1 cut(s) 603
BspCNI CTCAG 2 cut(s) 308, 538
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 2 cut(s) 307, 337
BspMAI CTGCAG 2 cut(s) 601, 697
BspPI GGATC 1 cut(s) 102
BspQI GCTCTTC 2 cut(s) 481, 685
BspTNI GGTCTC 1 cut(s) 386
BsrBI CCGCTC 1 cut(s) 423
BsrDI GCAATG 2 cut(s) 196, 712
BsrI ACTGG 4 cut(s) 122, 403, 440, 618
BssECI CCNNGG 3 cut(s) 583, 673, 684
BssMI GATC 3 cut(s) 94, 503, 664
BssT1I CCWWGG 2 cut(s) 583, 684
Bst2UI CCWGG 2 cut(s) 409, 674
Bst6I CTCTTC 3 cut(s) 349, 481, 685
BstC8I GCNNGC 1 cut(s) 601
BstDEI CTNAG 2 cut(s) 295, 546
BstF5I GGATG 1 cut(s) 658
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 3 cut(s) 11, 189, 722
BstKTI GATC 3 cut(s) 97, 506, 667
BstMAI GTCTC 2 cut(s) 386, 511
BstMBI GATC 3 cut(s) 94, 503, 664
BstNI CCWGG 2 cut(s) 409, 674
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 407, 672
BstSFI CTRYAG 2 cut(s) 597, 693
BstSLI GKGCMC 2 cut(s) 70, 649
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 5 cut(s) 583, 676, 679, 729, 734
BsuI GTATCC 1 cut(s) 156
BsuRI GGCC 1 cut(s) 603
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 1 cut(s) 658
BtsIMutI CAGTG 1 cut(s) 647
Cac8I GCNNGC 1 cut(s) 601
CfoI GCGC 3 cut(s) 11, 189, 722
Cfr13I GGNCC 2 cut(s) 153, 602
CseI GACGC 1 cut(s) 114
CviAII CATG 3 cut(s) 167, 276, 507
DdeI CTNAG 2 cut(s) 295, 546
DpnI GATC 3 cut(s) 96, 505, 666
DpnII GATC 3 cut(s) 94, 503, 664
DraI TTTAAA 1 cut(s) 283
Eam1104I CTCTTC 3 cut(s) 349, 481, 685
EarI CTCTTC 3 cut(s) 349, 481, 685
Eco130I CCWWGG 2 cut(s) 583, 684
Eco24I GRGCYC 1 cut(s) 680
Eco31I GGTCTC 1 cut(s) 386
Eco47I GGWCC 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 602
EcoRII CCWGG 2 cut(s) 407, 672
EcoT14I CCWWGG 2 cut(s) 583, 684
EcoT22I ATGCAT 1 cut(s) 634
EcoT38I GRGCYC 1 cut(s) 680
ErhI CCWWGG 2 cut(s) 583, 684
FaeI CATG 3 cut(s) 170, 279, 510
FaiI YATR 9 cut(s) 57, 168, 204, 240, 277, 381, 508, 634, 739
FatI CATG 3 cut(s) 166, 275, 506
Fnu4HI GCNGC 5 cut(s) 597, 690, 693, 718, 723
FokI GGATG 1 cut(s) 645
FriOI GRGCYC 1 cut(s) 680
Fsp4HI GCNGC 5 cut(s) 597, 690, 693, 718, 723
FspI TGCGCA 1 cut(s) 188
GlaI GCGC 3 cut(s) 10, 188, 721
GluI GCNGC 5 cut(s) 597, 690, 693, 718, 723
GsaI CCCAGC 1 cut(s) 349
GsuI CTGGAG 1 cut(s) 325
HaeIII GGCC 1 cut(s) 603
HgaI GACGC 1 cut(s) 114
HhaI GCGC 3 cut(s) 11, 189, 722
Hin1II CATG 3 cut(s) 170, 279, 510
Hin6I GCGC 3 cut(s) 9, 187, 720
HinP1I GCGC 3 cut(s) 9, 187, 720
HinfI GANTC 8 cut(s) 122, 232, 426, 458, 542, 548, 557, 563
HphI GGTGA 1 cut(s) 662
Hpy166II GTNNAC 1 cut(s) 647
Hpy188I TCNGA 6 cut(s) 222, 547, 553, 562, 568, 609
Hpy188III TCNNGA 2 cut(s) 156, 662
Hpy8I GTNNAC 1 cut(s) 647
HpyAV CCTTC 1 cut(s) 153
HpyCH4V TGCA 7 cut(s) 170, 206, 599, 632, 647, 695, 717
HpyF3I CTNAG 2 cut(s) 295, 546
Hsp92II CATG 3 cut(s) 170, 279, 510
HspAI GCGC 3 cut(s) 9, 187, 720
Kzo9I GATC 3 cut(s) 94, 503, 664
LguI GCTCTTC 2 cut(s) 481, 685
LmnI GCTCC 3 cut(s) 311, 335, 420
Lsp1109I GCAGC 5 cut(s) 583, 676, 679, 729, 734
LweI GCATC 1 cut(s) 667
MaeIII GTNAC 1 cut(s) 668
MalI GATC 3 cut(s) 96, 505, 666
MbiI CCGCTC 1 cut(s) 423
MboI GATC 3 cut(s) 94, 503, 664
MboII GAAGA 7 cut(s) 249, 366, 386, 464, 468, 629, 672
MhlI GDGCHC 3 cut(s) 70, 649, 680
MluCI AATT 3 cut(s) 481, 746, 757
MlyI GAGTC 2 cut(s) 557, 572
MmeI TCCRAC 2 cut(s) 72, 494
MnlI CCTC 8 cut(s) 54, 260, 349, 350, 523, 567, 615, 691
Mph1103I ATGCAT 1 cut(s) 634
MroXI GAANNNNTTC 1 cut(s) 475
MseI TTAA 2 cut(s) 282, 447
MslI CAYNNNNRTG 2 cut(s) 525, 652
MspA1I CMGCKG 2 cut(s) 345, 466
MspR9I CCNGG 2 cut(s) 409, 674
MvaI CCWGG 2 cut(s) 409, 674
MvnI CGCG 1 cut(s) 11
NdeII GATC 3 cut(s) 94, 503, 664
NlaIII CATG 3 cut(s) 170, 279, 510
NlaIV GGNNCC 2 cut(s) 307, 337
NmuCI GTSAC 1 cut(s) 668
NsbI TGCGCA 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 634
NspI RCATGY 1 cut(s) 170
PciSI GCTCTTC 2 cut(s) 481, 685
PdmI GAANNNNTTC 1 cut(s) 475
PfeI GAWTC 6 cut(s) 122, 232, 426, 458, 542, 557
PkrI GCNGC 5 cut(s) 598, 691, 694, 719, 724
PleI GAGTC 2 cut(s) 556, 571
PpsI GAGTC 2 cut(s) 556, 571
Psp6I CCWGG 2 cut(s) 407, 672
PspFI CCCAGC 1 cut(s) 345
PspGI CCWGG 2 cut(s) 407, 672
PspN4I GGNNCC 2 cut(s) 307, 337
PspPI GGNCC 2 cut(s) 153, 602
PstI CTGCAG 2 cut(s) 601, 697
PvuII CAGCTG 1 cut(s) 345
RseI CAYNNNNRTG 2 cut(s) 525, 652
SapI GCTCTTC 2 cut(s) 481, 685
SaqAI TTAA 2 cut(s) 282, 447
SatI GCNGC 5 cut(s) 597, 690, 693, 718, 723
Sau3AI GATC 3 cut(s) 94, 503, 664
Sau96I GGNCC 2 cut(s) 153, 602
SchI GAGTC 2 cut(s) 557, 572
ScrFI CCNGG 2 cut(s) 409, 674
SduI GDGCHC 3 cut(s) 70, 649, 680
SetI ASST 8 cut(s) 155, 347, 361, 413, 476, 578, 644, 727
SfaNI GCATC 1 cut(s) 667
SfcI CTRYAG 2 cut(s) 597, 693
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 2 cut(s) 525, 652
Sse9I AATT 3 cut(s) 481, 746, 757
SsiI CCGC 2 cut(s) 423, 466
StyD4I CCNGG 2 cut(s) 407, 672
StyI CCWWGG 2 cut(s) 583, 684
TaqI TCGA 3 cut(s) 50, 363, 637
TasI AATT 3 cut(s) 481, 746, 757
TfiI GAWTC 6 cut(s) 122, 232, 426, 458, 542, 557
Tru1I TTAA 2 cut(s) 282, 447
Tru9I TTAA 2 cut(s) 282, 447
TscAI CASTG 1 cut(s) 654
TseFI GTSAC 1 cut(s) 668
TseI GCWGC 5 cut(s) 596, 689, 692, 717, 722
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 5 cut(s) 17, 29, 65, 264, 465
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 1 cut(s) 654
VneI GTGCAC 1 cut(s) 645
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 1 cut(s) 170
XcmI CCANNNNNNNNNTGG 1 cut(s) 410
XmnI GAANNNNTTC 1 cut(s) 475
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.